Wall clock time and date at job start Tue Mar 31 2020 20:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47174 * 2 1 4 4 H 1.09000 * 109.46870 * 55.22230 * 3 2 1 5 5 C 1.50706 * 109.46879 * 175.22400 * 3 2 1 6 6 O 1.21278 * 119.99998 * 106.38909 * 5 3 2 7 7 N 1.34773 * 119.99668 * 286.38903 * 5 3 2 8 8 C 1.46927 * 120.63250 * 5.16065 * 7 5 3 9 9 C 1.52763 * 109.00821 * 233.58351 * 8 7 5 10 10 C 1.53043 * 109.38278 * 305.58732 * 9 8 7 11 11 C 1.52997 * 109.45920 * 181.25796 * 10 9 8 12 12 N 1.46490 * 109.45243 * 301.22877 * 10 9 8 13 13 C 1.36938 * 120.00157 * 300.05990 * 12 10 9 14 14 H 1.08005 * 119.99427 * 0.02562 * 13 12 10 15 15 C 1.38806 * 120.00588 * 179.97438 * 13 12 10 16 16 N 1.31621 * 119.99711 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00465 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46930 * 59.99833 * 17 15 13 19 19 H 1.48497 * 109.47396 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47247 * 300.00035 * 17 15 13 21 21 C 1.53043 * 109.53598 * 61.24599 * 10 9 8 22 22 C 1.46923 * 120.62917 * 185.44288 * 7 5 3 23 23 N 1.46490 * 109.47106 * 295.22372 * 3 2 1 24 24 C 1.46765 * 124.34928 * 119.99899 * 23 3 2 25 25 C 1.54489 * 105.47444 * 162.97007 * 24 23 3 26 26 C 1.54628 * 101.76390 * 25.41645 * 25 24 23 27 27 C 1.34746 * 124.30036 * 299.94736 * 23 3 2 28 28 O 1.21280 * 125.12428 * 0.43546 * 27 23 3 29 29 H 1.08996 * 109.47206 * 300.00277 * 1 2 3 30 30 H 1.09007 * 109.46579 * 59.99878 * 1 2 3 31 31 H 1.09000 * 109.47369 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47206 * 239.99723 * 2 1 3 33 33 H 1.08993 * 109.46736 * 120.00042 * 2 1 3 34 34 H 1.08992 * 109.58765 * 353.41865 * 8 7 5 35 35 H 1.09001 * 109.58652 * 113.84834 * 8 7 5 36 36 H 1.09000 * 109.56645 * 185.55652 * 9 8 7 37 37 H 1.09003 * 109.38625 * 65.51362 * 9 8 7 38 38 H 1.09005 * 109.47760 * 299.93575 * 11 10 9 39 39 H 1.09006 * 109.47271 * 59.93788 * 11 10 9 40 40 H 1.09001 * 109.47162 * 179.97438 * 11 10 9 41 41 H 0.97002 * 120.00123 * 120.06147 * 12 10 9 42 42 H 0.97004 * 120.00204 * 179.97438 * 16 15 13 43 43 H 1.09004 * 109.49992 * 178.68283 * 21 10 9 44 44 H 1.08992 * 109.52785 * 58.59870 * 21 10 9 45 45 H 1.08999 * 109.59152 * 246.15946 * 22 7 5 46 46 H 1.09004 * 109.58523 * 6.57795 * 22 7 5 47 47 H 1.09003 * 110.24666 * 43.97308 * 24 23 3 48 48 H 1.08994 * 110.24965 * 281.96944 * 24 23 3 49 49 H 1.09001 * 110.96958 * 267.29885 * 25 24 23 50 50 H 1.08999 * 111.00065 * 143.55114 * 25 24 23 51 51 H 1.09007 * 110.48178 * 93.87485 * 26 25 24 52 52 H 1.08991 * 110.48990 * 216.39205 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6085 1.9804 0.8441 5 6 3.5424 1.4441 0.1183 6 8 4.2264 1.7130 -0.8464 7 7 4.1259 1.1467 1.2962 8 6 3.3177 0.7096 2.4427 9 6 3.6361 1.5984 3.6437 10 6 5.1453 1.5877 3.8975 11 6 5.4627 2.4524 5.1191 12 7 5.5888 0.2135 4.1437 13 6 5.0703 -0.4956 5.1942 14 1 4.3340 -0.0417 5.8410 15 6 5.4902 -1.7980 5.4272 16 7 6.3871 -2.3512 4.6387 17 14 4.7824 -2.7654 6.8598 18 1 3.3114 -2.8865 6.6966 19 1 5.3906 -4.1198 6.8912 20 1 5.0829 -2.0588 8.1310 21 6 5.8741 2.1473 2.6736 22 6 5.5816 1.2592 1.4601 23 7 1.6479 2.0991 -1.2494 24 6 0.8027 3.2965 -1.3258 25 6 1.0193 3.8639 -2.7464 26 6 1.4406 2.5993 -3.5301 27 6 2.0182 1.6809 -2.4757 28 8 2.7112 0.7119 -2.7027 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8899 34 1 2.2592 0.7948 2.1973 35 1 3.5566 -0.3260 2.6847 36 1 3.1164 1.2217 4.5246 37 1 3.3092 2.6174 3.4364 38 1 5.1332 3.4752 4.9360 39 1 4.9438 2.0541 5.9911 40 1 6.5375 2.4446 5.3004 41 1 6.2499 -0.1943 3.5626 42 1 6.6809 -3.2612 4.8017 43 1 6.9473 2.1612 2.8641 44 1 5.5267 3.1611 2.4747 45 1 6.0090 0.2694 1.6201 46 1 6.0163 1.7070 0.5664 47 1 1.1129 4.0256 -0.5772 48 1 -0.2441 3.0292 -1.1820 49 1 1.8147 4.6092 -2.7517 50 1 0.0946 4.2804 -3.1458 51 1 0.5742 2.1382 -4.0044 52 1 2.1961 2.8467 -4.2758 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724962632.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:38 Heat of formation + Delta-G solvation = -72.401189 kcal Electronic energy + Delta-G solvation = -31932.034643 eV Core-core repulsion = 27930.962974 eV Total energy + Delta-G solvation = -4001.071669 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.01234 -40.76183 -39.10547 -37.38275 -36.23809 -35.71492 -34.11646 -32.17368 -31.89355 -30.86409 -29.42182 -28.40142 -27.87627 -25.84169 -24.33394 -24.17561 -23.12162 -22.67165 -21.55293 -20.07854 -19.39613 -18.96665 -18.30024 -17.86172 -17.39968 -16.71603 -16.57212 -16.17143 -15.81828 -15.63032 -15.49109 -15.21667 -14.95478 -14.90175 -14.55032 -14.46477 -14.30636 -14.06949 -13.87162 -13.65749 -13.47561 -13.29559 -13.16251 -12.90967 -12.79840 -12.67031 -12.62090 -12.55505 -12.39487 -12.20816 -12.14194 -12.07670 -12.01403 -11.80789 -11.72846 -11.45918 -11.09549 -10.93683 -10.76736 -10.57707 -9.66691 -9.55828 -8.88647 -7.84257 -5.10507 1.50483 1.51723 1.52227 1.57522 1.61123 1.93887 2.26109 2.62316 3.34185 3.50013 3.55308 3.67720 3.82714 3.83889 3.89976 3.96157 3.99761 4.11767 4.16950 4.21949 4.27450 4.35655 4.40528 4.46035 4.65994 4.68151 4.69444 4.71907 4.76566 4.79564 4.88927 4.90714 5.02187 5.03415 5.05408 5.09032 5.11884 5.12688 5.18962 5.26468 5.32622 5.33364 5.37023 5.58170 5.60118 5.67257 5.72026 6.24226 6.36903 6.46900 7.12212 7.34184 7.43816 8.20962 8.43568 9.39591 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016811 B = 0.003329 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.179492 B = 8408.412821 C = 8925.124492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.138 4.138 3 C 0.151 3.849 4 H 0.146 0.854 5 C 0.493 3.507 6 O -0.571 6.571 7 N -0.597 5.597 8 C 0.118 3.882 9 C -0.128 4.128 10 C 0.187 3.813 11 C -0.143 4.143 12 N -0.726 5.726 13 C -0.209 4.209 14 H 0.082 0.918 15 C -0.079 4.079 16 N -0.974 5.974 17 Si 0.959 3.041 18 H -0.276 1.276 19 H -0.308 1.308 20 H -0.282 1.282 21 C -0.115 4.115 22 C 0.122 3.878 23 N -0.609 5.609 24 C 0.097 3.903 25 C -0.118 4.118 26 C -0.150 4.150 27 C 0.504 3.496 28 O -0.574 6.574 29 H 0.082 0.918 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.044 0.956 33 H 0.077 0.923 34 H 0.105 0.895 35 H 0.050 0.950 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.044 0.956 40 H 0.036 0.964 41 H 0.368 0.632 42 H 0.244 0.756 43 H 0.070 0.930 44 H 0.086 0.914 45 H 0.043 0.957 46 H 0.072 0.928 47 H 0.090 0.910 48 H 0.102 0.898 49 H 0.077 0.923 50 H 0.126 0.874 51 H 0.122 0.878 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.117 17.338 -9.941 26.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.177 4.177 3 C 0.044 3.956 4 H 0.163 0.837 5 C 0.280 3.720 6 O -0.450 6.450 7 N -0.330 5.330 8 C -0.004 4.004 9 C -0.168 4.168 10 C 0.097 3.903 11 C -0.202 4.202 12 N -0.367 5.367 13 C -0.341 4.341 14 H 0.100 0.900 15 C -0.271 4.271 16 N -0.626 5.626 17 Si 0.790 3.210 18 H -0.202 1.202 19 H -0.235 1.235 20 H -0.208 1.208 21 C -0.154 4.154 22 C -0.001 4.001 23 N -0.343 5.343 24 C -0.024 4.024 25 C -0.155 4.155 26 C -0.190 4.190 27 C 0.294 3.706 28 O -0.452 6.452 29 H 0.101 0.899 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.096 0.904 34 H 0.123 0.877 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.063 0.937 40 H 0.055 0.945 41 H 0.201 0.799 42 H 0.053 0.947 43 H 0.088 0.912 44 H 0.105 0.895 45 H 0.061 0.939 46 H 0.090 0.910 47 H 0.108 0.892 48 H 0.120 0.880 49 H 0.096 0.904 50 H 0.144 0.856 51 H 0.140 0.860 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -17.494 16.925 -10.347 26.449 hybrid contribution 1.069 -1.680 0.685 2.106 sum -16.424 15.245 -9.662 24.403 Atomic orbital electron populations 1.21648 0.91690 1.02658 1.03112 1.21918 0.99371 0.93823 1.02560 1.20886 0.89442 0.96382 0.88905 0.83700 1.21571 0.92158 0.76288 0.81935 1.90674 1.66079 1.50524 1.37730 1.48100 1.07651 1.65772 1.11497 1.21716 0.95010 0.98711 0.84942 1.22177 0.97612 0.99650 0.97393 1.19877 0.92910 0.84646 0.92839 1.22128 1.00477 0.99131 0.98470 1.42726 1.49596 1.10774 1.33568 1.19421 1.16509 0.93966 1.04182 0.90029 1.25391 1.01001 0.98952 1.01740 1.69818 1.36598 1.14361 1.41869 0.85410 0.78040 0.77422 0.80121 1.20184 1.23532 1.20831 1.21987 1.00899 0.99084 0.93416 1.21343 0.80727 0.99480 0.98591 1.48248 1.51231 1.30560 1.04278 1.22481 0.95387 0.85165 0.99387 1.22624 1.04529 0.95507 0.92890 1.22355 1.03242 0.96460 0.96950 1.21764 0.78350 0.84787 0.85719 1.90686 1.39143 1.31040 1.84336 0.89941 0.92216 0.92224 0.93731 0.90437 0.87708 0.93109 0.90916 0.89889 0.91116 0.93690 0.94473 0.79925 0.94720 0.91155 0.89522 0.93867 0.90981 0.89189 0.87959 0.90394 0.85563 0.85987 0.88840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.26 9.80 71.98 0.71 -1.55 16 2 C -0.14 -3.49 4.94 30.60 0.15 -3.34 16 3 C 0.15 3.66 1.82 44.25 0.08 3.74 16 4 H 0.15 2.39 7.11 -2.39 -0.02 2.37 16 5 C 0.49 16.80 6.86 87.66 0.60 17.40 16 6 O -0.57 -24.45 13.73 16.23 0.22 -24.23 16 7 N -0.60 -19.94 2.98 -819.74 -2.44 -22.38 16 8 C 0.12 3.58 4.97 86.22 0.43 4.01 16 9 C -0.13 -3.71 4.69 30.53 0.14 -3.57 16 10 C 0.19 6.43 0.74 3.63 0.00 6.43 16 11 C -0.14 -4.53 8.44 71.98 0.61 -3.93 16 12 N -0.73 -33.22 4.14 -303.24 -1.25 -34.48 16 13 C -0.21 -10.51 8.68 84.03 0.73 -9.78 16 14 H 0.08 3.86 6.70 -2.91 -0.02 3.85 16 15 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 16 N -0.97 -58.99 13.06 21.65 0.28 -58.70 16 17 Si 0.96 44.89 29.55 68.60 2.03 46.92 16 18 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 19 H -0.31 -15.10 7.11 99.48 0.71 -14.40 16 20 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 21 C -0.12 -3.65 4.96 30.67 0.15 -3.50 16 22 C 0.12 4.43 6.15 86.36 0.53 4.96 16 23 N -0.61 -13.34 2.17 -797.70 -1.73 -15.06 16 24 C 0.10 1.01 7.30 86.83 0.63 1.65 16 25 C -0.12 -1.02 7.18 31.65 0.23 -0.80 16 26 C -0.15 -2.44 6.85 30.59 0.21 -2.23 16 27 C 0.50 14.28 6.69 87.85 0.59 14.87 16 28 O -0.57 -23.36 14.94 16.23 0.24 -23.12 16 29 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.06 0.94 7.75 -2.38 -0.02 0.92 16 31 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.04 1.49 6.64 -2.39 -0.02 1.48 16 33 H 0.08 2.05 6.06 -2.39 -0.01 2.03 16 34 H 0.10 2.37 4.75 -2.39 -0.01 2.36 16 35 H 0.05 1.99 7.74 -2.39 -0.02 1.97 16 36 H 0.07 2.20 7.31 -2.39 -0.02 2.18 16 37 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 39 H 0.04 1.52 7.27 -2.38 -0.02 1.50 16 40 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.37 19.14 6.46 -92.71 -0.60 18.54 16 42 H 0.24 14.70 8.31 -92.71 -0.77 13.93 16 43 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 44 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 45 H 0.04 1.84 6.94 -2.39 -0.02 1.82 16 46 H 0.07 2.72 7.04 -2.38 -0.02 2.70 16 47 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 48 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 49 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 50 H 0.13 0.22 8.14 -2.39 -0.02 0.20 16 51 H 0.12 1.42 8.14 -2.38 -0.02 1.40 16 52 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -80.30 393.38 3.92 -76.38 By element: Atomic # 1 Polarization: 33.89 SS G_CDS: 0.32 Total: 34.21 kcal Atomic # 6 Polarization: 14.21 SS G_CDS: 6.26 Total: 20.47 kcal Atomic # 7 Polarization: -125.48 SS G_CDS: -5.14 Total: -130.62 kcal Atomic # 8 Polarization: -47.81 SS G_CDS: 0.47 Total: -47.34 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -80.30 3.92 -76.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724962632.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.976 kcal (2) G-P(sol) polarization free energy of solvation -80.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds