Wall clock time and date at job start Tue Mar 31 2020 20:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46984 * 2 1 4 4 H 1.08997 * 109.47041 * 304.99783 * 3 2 1 5 5 C 1.52997 * 109.47068 * 64.99806 * 3 2 1 6 6 C 1.50700 * 109.47289 * 184.99672 * 3 2 1 7 7 O 1.21279 * 119.99783 * 324.65042 * 6 3 2 8 8 N 1.34777 * 120.00151 * 144.64386 * 6 3 2 9 9 C 1.47168 * 135.99476 * 183.88219 * 8 6 3 10 10 C 1.53193 * 87.73912 * 153.42181 * 9 8 6 11 11 C 1.47163 * 135.99395 * 4.25492 * 8 6 3 12 12 C 1.52599 * 114.02745 * 139.57217 * 10 9 8 13 13 C 1.53326 * 108.89511 * 186.63225 * 12 10 9 14 14 C 1.53024 * 109.16589 * 304.76747 * 13 12 10 15 15 N 1.46820 * 109.79828 * 61.06364 * 14 13 12 16 16 C 1.46896 * 110.99976 * 172.35229 * 15 14 13 17 17 C 1.50702 * 109.47203 * 190.52183 * 16 15 14 18 18 O 1.21296 * 119.99859 * 6.48064 * 17 16 15 19 19 N 1.34782 * 119.99848 * 186.48449 * 17 16 15 20 20 C 1.37103 * 119.99743 * 179.97438 * 19 17 16 21 21 H 1.08003 * 119.99482 * 359.97438 * 20 19 17 22 22 C 1.38940 * 119.99806 * 179.97438 * 20 19 17 23 23 N 1.31411 * 120.00593 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99745 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46993 * 90.00579 * 24 22 20 26 26 H 1.48500 * 109.47202 * 209.99906 * 24 22 20 27 27 H 1.48492 * 109.47445 * 330.00199 * 24 22 20 28 28 C 1.47044 * 111.14602 * 296.40980 * 15 14 13 29 29 H 1.09002 * 109.47333 * 300.00391 * 1 2 3 30 30 H 1.09000 * 109.46993 * 60.00329 * 1 2 3 31 31 H 1.09004 * 109.46811 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47221 * 239.99767 * 2 1 3 33 33 H 1.09000 * 109.46993 * 119.99671 * 2 1 3 34 34 H 1.09003 * 109.47747 * 53.89522 * 5 3 2 35 35 H 1.09005 * 109.47156 * 173.89921 * 5 3 2 36 36 H 1.09005 * 109.47208 * 293.89337 * 5 3 2 37 37 H 1.09000 * 113.49197 * 268.10975 * 9 8 6 38 38 H 1.08998 * 113.49000 * 38.62052 * 9 8 6 39 39 H 1.09003 * 113.49136 * 321.36571 * 11 8 6 40 40 H 1.08994 * 113.49723 * 91.88903 * 11 8 6 41 41 H 1.08999 * 109.56902 * 306.45589 * 12 10 9 42 42 H 1.09008 * 109.56896 * 66.80956 * 12 10 9 43 43 H 1.09008 * 109.51804 * 184.86508 * 13 12 10 44 44 H 1.08998 * 109.56871 * 64.71018 * 13 12 10 45 45 H 1.09001 * 109.41981 * 300.96396 * 14 13 12 46 46 H 1.08998 * 109.36072 * 181.12904 * 14 13 12 47 47 H 1.09003 * 109.47232 * 310.52134 * 16 15 14 48 48 H 1.09004 * 109.47550 * 70.51969 * 16 15 14 49 49 H 0.96996 * 120.00142 * 359.97438 * 19 17 16 50 50 H 0.96993 * 120.00403 * 180.02562 * 23 22 20 51 51 H 1.08997 * 109.50440 * 299.15691 * 28 15 14 52 52 H 1.09004 * 109.49856 * 179.05062 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1266 1.3073 6 6 3.5419 1.4444 -0.1237 7 8 4.1951 0.5712 0.4070 8 7 4.1591 2.4164 -0.8243 9 6 5.5434 2.7181 -1.2225 10 6 4.9686 3.4764 -2.4230 11 6 3.7453 3.6449 -1.5209 12 6 5.6942 4.7810 -2.7393 13 6 4.9288 5.5199 -3.8434 14 6 4.7701 4.5935 -5.0510 15 7 4.0030 3.4022 -4.6665 16 6 3.6788 2.5827 -5.8418 17 6 2.6835 1.5197 -5.4540 18 8 2.1945 1.5228 -4.3439 19 7 2.3368 0.5656 -6.3406 20 6 1.4316 -0.4018 -5.9876 21 1 0.9969 -0.3995 -4.9989 22 6 1.0738 -1.3850 -6.9017 23 7 1.6032 -1.3881 -8.1044 24 14 -0.1589 -2.7036 -6.4205 25 1 -1.5310 -2.2438 -6.7542 26 1 0.1385 -3.9542 -7.1639 27 1 -0.0643 -2.9608 -4.9611 28 6 4.7213 2.6123 -3.6553 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.9777 1.5284 2.1517 35 1 2.0892 3.1164 1.3552 36 1 0.5500 2.2224 1.3464 37 1 6.0691 3.3593 -0.5150 38 1 6.1183 1.8344 -1.4994 39 1 2.7979 3.5458 -2.0506 40 1 3.7875 4.5353 -0.8937 41 1 5.7348 5.4024 -1.8447 42 1 6.7063 4.5625 -3.0803 43 1 5.4840 6.4105 -4.1381 44 1 3.9449 5.8094 -3.4745 45 1 5.7547 4.2910 -5.4076 46 1 4.2438 5.1225 -5.8455 47 1 3.2503 3.2156 -6.6189 48 1 4.5868 2.1107 -6.2173 49 1 2.7276 0.5634 -7.2283 50 1 1.3531 -2.0743 -8.7427 51 1 5.6755 2.2796 -4.0638 52 1 4.1218 1.7454 -3.3775 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725332761.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:24 Heat of formation + Delta-G solvation = -43.564633 kcal Electronic energy + Delta-G solvation = -31382.112697 eV Core-core repulsion = 27382.291475 eV Total energy + Delta-G solvation = -3999.821222 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.02973 -39.01678 -38.12397 -36.55242 -35.11863 -33.95564 -32.86304 -31.20135 -30.67225 -29.44581 -27.65052 -26.61208 -26.05029 -24.77780 -24.71831 -23.00899 -21.77441 -20.68606 -19.16709 -18.91295 -18.28186 -17.84593 -16.97821 -16.00676 -15.85995 -15.72341 -15.31740 -14.97614 -14.61958 -14.58990 -14.27012 -14.06326 -13.87929 -13.62740 -13.48954 -13.24177 -13.07208 -12.75979 -12.51129 -12.38569 -12.36651 -12.08349 -11.90980 -11.78567 -11.55901 -11.50621 -11.39979 -11.31505 -11.02952 -11.00462 -10.67324 -10.62562 -10.47406 -10.39101 -10.38328 -10.20858 -10.15645 -9.46306 -9.36108 -8.53986 -8.43389 -7.96442 -7.86515 -6.40648 -3.81144 2.87350 2.97998 3.18370 3.27244 3.32997 3.83029 3.92102 4.18185 4.39128 4.55112 4.69567 4.82431 4.92782 5.00173 5.05519 5.10619 5.14079 5.25808 5.31341 5.35746 5.44709 5.51297 5.54350 5.60225 5.62473 5.63724 5.64282 5.65616 5.71582 5.75565 5.83458 5.85530 5.90138 5.97544 5.99015 5.99944 6.06283 6.12648 6.13989 6.24158 6.29392 6.30677 6.44322 6.51205 6.55492 7.25193 7.37991 7.56177 7.91118 8.07465 8.39128 8.62951 9.19506 9.55930 10.07440 10.77182 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008207 B = 0.004681 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3410.882365 B = 5980.034802 C = 8715.517554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.105 4.105 3 C -0.102 4.102 4 H 0.096 0.904 5 C -0.136 4.136 6 C 0.554 3.446 7 O -0.550 6.550 8 N -0.641 5.641 9 C 0.110 3.890 10 C -0.086 4.086 11 C 0.115 3.885 12 C -0.102 4.102 13 C -0.112 4.112 14 C 0.053 3.947 15 N -0.511 5.511 16 C 0.046 3.954 17 C 0.443 3.557 18 O -0.574 6.574 19 N -0.565 5.565 20 C -0.296 4.296 21 H 0.102 0.898 22 C 0.023 3.977 23 N -0.903 5.903 24 Si 0.927 3.073 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.269 1.269 28 C 0.082 3.918 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.073 0.927 45 H 0.029 0.971 46 H 0.073 0.927 47 H 0.090 0.910 48 H 0.045 0.955 49 H 0.391 0.609 50 H 0.271 0.729 51 H 0.028 0.972 52 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.950 13.735 9.916 17.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.143 4.143 3 C -0.124 4.124 4 H 0.114 0.886 5 C -0.194 4.194 6 C 0.344 3.656 7 O -0.428 6.428 8 N -0.375 5.375 9 C -0.013 4.013 10 C -0.088 4.088 11 C -0.008 4.008 12 C -0.140 4.140 13 C -0.150 4.150 14 C -0.075 4.075 15 N -0.235 5.235 16 C -0.085 4.085 17 C 0.228 3.772 18 O -0.458 6.458 19 N -0.202 5.202 20 C -0.425 4.425 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.754 3.246 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.194 1.194 28 C -0.045 4.045 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.115 0.885 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.092 0.908 45 H 0.047 0.953 46 H 0.092 0.908 47 H 0.108 0.892 48 H 0.063 0.937 49 H 0.224 0.776 50 H 0.081 0.919 51 H 0.046 0.954 52 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 5.367 13.092 11.130 18.002 hybrid contribution 0.471 -0.913 -0.975 1.417 sum 5.838 12.178 10.155 16.897 Atomic orbital electron populations 1.21796 0.95306 1.01843 1.01837 1.21352 0.95832 0.94017 1.03123 1.21228 0.91103 0.99565 1.00467 0.88574 1.21725 1.01926 0.99874 0.95875 1.20292 0.89976 0.79635 0.75667 1.90657 1.67628 1.37411 1.47073 1.49587 1.10076 1.23998 1.53872 1.22999 0.85913 0.98814 0.93607 1.21818 0.96622 0.96105 0.94211 1.22982 1.00450 0.86021 0.91313 1.21434 0.98737 0.94729 0.99139 1.21562 1.01026 0.97248 0.95161 1.22105 0.95927 0.92094 0.97417 1.61499 1.44402 1.06925 1.10697 1.21860 0.98283 0.95725 0.92624 1.19735 0.86551 0.84281 0.86607 1.90490 1.57542 1.76169 1.21560 1.41882 1.39502 1.24533 1.14307 1.19663 1.18512 1.03948 1.00419 0.87970 1.25230 0.98672 0.98885 0.95093 1.69605 1.43921 1.35696 1.05191 0.85904 0.80182 0.79708 0.78811 1.20409 1.20969 1.19388 1.21811 0.96448 0.96384 0.89894 0.92871 0.92133 0.92586 0.91236 0.91408 0.92151 0.92797 0.91257 0.89993 0.90679 0.88548 0.90435 0.91426 0.91619 0.91570 0.90824 0.95285 0.90828 0.89231 0.93721 0.77590 0.91927 0.95395 0.87857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.67 37.16 0.36 -1.63 16 2 C -0.11 -1.62 4.98 -26.73 -0.13 -1.76 16 3 C -0.10 -1.51 2.62 -91.77 -0.24 -1.75 16 4 H 0.10 1.49 7.59 -51.93 -0.39 1.09 16 5 C -0.14 -1.59 8.78 37.16 0.33 -1.26 16 6 C 0.55 9.48 7.07 -10.99 -0.08 9.40 16 7 O -0.55 -11.19 17.16 5.56 0.10 -11.10 16 8 N -0.64 -9.52 3.47 -184.97 -0.64 -10.16 16 9 C 0.11 1.38 7.80 -8.05 -0.06 1.32 16 10 C -0.09 -1.04 0.95 -154.90 -0.15 -1.18 16 11 C 0.12 1.44 7.33 -8.19 -0.06 1.38 16 12 C -0.10 -0.92 5.23 -26.77 -0.14 -1.06 16 13 C -0.11 -1.03 6.08 -26.55 -0.16 -1.19 16 14 C 0.05 0.60 5.40 -3.86 -0.02 0.58 16 15 N -0.51 -7.76 4.36 -236.31 -1.03 -8.79 16 16 C 0.05 0.79 5.45 -4.98 -0.03 0.76 16 17 C 0.44 10.04 7.34 -10.98 -0.08 9.96 16 18 O -0.57 -14.54 14.27 5.54 0.08 -14.46 16 19 N -0.57 -14.03 5.29 -10.96 -0.06 -14.09 16 20 C -0.30 -8.12 9.68 -14.93 -0.14 -8.27 16 21 H 0.10 2.95 7.16 -52.48 -0.38 2.57 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.49 13.05 55.49 0.72 -23.77 16 24 Si 0.93 21.11 29.55 -169.99 -5.02 16.08 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 27 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 28 C 0.08 1.27 4.30 -3.99 -0.02 1.25 16 29 H 0.05 0.59 6.70 -51.93 -0.35 0.24 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.07 1.03 8.02 -51.93 -0.42 0.61 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.69 6.87 -51.93 -0.36 0.34 16 37 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 38 H 0.07 1.02 8.12 -51.93 -0.42 0.60 16 39 H 0.10 1.43 7.82 -51.93 -0.41 1.03 16 40 H 0.08 0.76 8.01 -51.93 -0.42 0.35 16 41 H 0.07 0.50 8.02 -51.93 -0.42 0.08 16 42 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 43 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.07 0.79 7.97 -51.93 -0.41 0.37 16 47 H 0.09 1.38 7.95 -51.93 -0.41 0.96 16 48 H 0.04 0.72 8.12 -51.93 -0.42 0.29 16 49 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 50 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 51 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 52 H 0.10 2.06 5.91 -51.93 -0.31 1.75 16 LS Contribution 410.60 15.07 6.19 6.19 Total: -1.00 -32.21 410.60 -9.60 -41.81 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: -9.21 Total: 11.24 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: -0.72 Total: 7.05 kcal Atomic # 7 Polarization: -55.81 SS G_CDS: -1.00 Total: -56.81 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: 0.17 Total: -25.55 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -32.21 -9.60 -41.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725332761.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.757 kcal (2) G-P(sol) polarization free energy of solvation -32.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds