Wall clock time and date at job start Tue Mar 31 2020 19:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50699 * 120.00141 * 2 1 4 4 C 1.53006 * 109.46866 * 0.02562 * 3 2 1 5 5 C 1.52997 * 109.47265 * 120.00002 * 3 2 1 6 6 C 1.52996 * 109.46975 * 59.99864 * 5 3 2 7 7 C 1.50698 * 109.46911 * 240.00230 * 3 2 1 8 8 O 1.21273 * 120.00521 * 359.97438 * 7 3 2 9 9 N 1.34786 * 119.99672 * 179.97438 * 7 3 2 10 10 C 1.46499 * 119.99820 * 179.97438 * 9 7 3 11 11 H 1.08998 * 112.85001 * 336.20156 * 10 9 7 12 12 C 1.53784 * 113.61099 * 107.50319 * 10 9 7 13 13 C 1.53784 * 87.08072 * 89.11517 * 12 10 9 14 14 H 1.08995 * 113.68872 * 270.87254 * 13 12 10 15 15 C 1.53000 * 113.61300 * 139.98076 * 13 12 10 16 16 N 1.46898 * 109.47090 * 87.50195 * 15 13 12 17 17 C 1.46904 * 110.99746 * 179.97438 * 16 15 13 18 18 C 1.50701 * 109.46992 * 179.97438 * 17 16 15 19 19 O 1.21289 * 119.99696 * 0.02562 * 18 17 16 20 20 N 1.34774 * 119.99704 * 179.97438 * 18 17 16 21 21 C 1.37104 * 119.99761 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99781 * 359.97438 * 21 20 18 23 23 C 1.38948 * 119.99904 * 180.02562 * 21 20 18 24 24 N 1.31406 * 120.00238 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99915 * 179.97438 * 23 21 20 26 26 H 1.48510 * 109.46961 * 89.99877 * 25 23 21 27 27 H 1.48497 * 109.47435 * 209.99726 * 25 23 21 28 28 H 1.48503 * 109.47410 * 330.00040 * 25 23 21 29 29 C 1.53777 * 113.61172 * 204.99895 * 10 9 7 30 30 H 1.08007 * 120.00349 * 180.02562 * 1 2 3 31 31 H 1.08001 * 120.00048 * 359.97438 * 1 2 3 32 32 H 1.08002 * 119.99525 * 180.02562 * 2 1 3 33 33 H 1.09001 * 109.47002 * 179.97438 * 4 3 2 34 34 H 1.08993 * 109.46955 * 300.00219 * 4 3 2 35 35 H 1.09000 * 109.47050 * 60.00048 * 4 3 2 36 36 H 1.09001 * 109.47375 * 180.02562 * 5 3 2 37 37 H 1.09000 * 109.47140 * 300.00252 * 5 3 2 38 38 H 1.09001 * 109.47367 * 299.99815 * 6 5 3 39 39 H 1.09004 * 109.47368 * 60.00217 * 6 5 3 40 40 H 1.09004 * 109.47108 * 180.02562 * 6 5 3 41 41 H 0.96999 * 119.99591 * 359.97438 * 9 7 3 42 42 H 1.08996 * 113.60958 * 203.66482 * 12 10 9 43 43 H 1.08999 * 113.61312 * 334.56755 * 12 10 9 44 44 H 1.09000 * 109.46937 * 207.50623 * 15 13 12 45 45 H 1.09001 * 109.46689 * 327.49855 * 15 13 12 46 46 H 1.00892 * 110.99860 * 303.95051 * 16 15 13 47 47 H 1.08995 * 109.47476 * 300.00700 * 17 16 15 48 48 H 1.09005 * 109.46359 * 60.00176 * 17 16 15 49 49 H 0.96998 * 120.00138 * 0.02562 * 20 18 17 50 50 H 0.97000 * 120.00428 * 180.02562 * 24 23 21 51 51 H 1.08995 * 113.62004 * 25.43859 * 29 10 9 52 52 H 1.09005 * 113.60867 * 156.25500 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0692 2.4680 0.0006 5 6 2.9431 1.3861 1.2492 6 6 3.9373 0.2232 1.2492 7 6 2.9298 1.3849 -1.2305 8 8 2.9353 0.4718 -2.0286 9 7 3.6987 2.4711 -1.4440 10 6 4.5413 2.5485 -2.6399 11 1 4.7886 1.5683 -3.0476 12 6 4.0261 3.5436 -3.6931 13 6 4.8587 4.6168 -2.9720 14 1 4.3197 5.1256 -2.1729 15 6 5.5653 5.5855 -3.9225 16 7 4.6650 6.7011 -4.2430 17 6 5.3116 7.6539 -5.1552 18 6 4.3597 8.7815 -5.4611 19 8 3.2519 8.7907 -4.9673 20 7 4.7398 9.7801 -6.2825 21 6 3.8740 10.8063 -6.5603 22 1 2.8873 10.8140 -6.1213 23 6 4.2657 11.8356 -7.4075 24 7 5.4661 11.8258 -7.9421 25 14 3.0858 13.2332 -7.7866 26 1 3.2677 14.3188 -6.7896 27 1 3.3627 13.7595 -9.1473 28 1 1.6891 12.7328 -7.7242 29 6 5.7592 3.4729 -2.4765 30 1 -0.5401 -0.9353 0.0004 31 1 -0.5400 0.9353 0.0004 32 1 1.8499 -0.9354 -0.0004 33 1 1.6142 3.4120 0.0011 34 1 0.4422 2.4104 -0.8890 35 1 0.4429 2.4101 0.8909 36 1 3.4878 2.3303 1.2495 37 1 2.3165 1.3284 2.1392 38 1 3.3923 -0.7208 1.2493 39 1 4.5640 0.2809 0.3592 40 1 4.5637 0.2807 2.1394 41 1 3.6940 3.2016 -0.8058 42 1 4.3727 3.3281 -4.7038 43 1 2.9512 3.7169 -3.6411 44 1 6.4660 5.9710 -3.4448 45 1 5.8361 5.0620 -4.8394 46 1 3.7953 6.3647 -4.6281 47 1 6.2103 8.0537 -4.6858 48 1 5.5809 7.1450 -6.0808 49 1 5.6259 9.7729 -6.6770 50 1 5.7396 12.5445 -8.5332 51 1 6.0836 3.5892 -1.4425 52 1 6.5802 3.2372 -3.1537 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725364613.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:56 Heat of formation + Delta-G solvation = -67.448864 kcal Electronic energy + Delta-G solvation = -28806.485088 eV Core-core repulsion = 24805.628168 eV Total energy + Delta-G solvation = -4000.856920 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.69192 -40.26842 -39.83787 -37.52987 -36.53058 -35.77609 -34.23753 -33.26217 -32.87634 -30.50776 -29.64297 -27.32437 -26.63856 -26.05194 -25.21702 -23.78978 -23.03016 -22.18085 -21.13003 -20.16775 -19.86315 -19.51896 -17.97556 -17.70532 -17.31433 -17.03574 -16.55214 -16.46210 -16.16462 -16.01898 -15.65498 -15.42986 -15.28724 -15.03002 -14.87161 -14.43958 -14.25687 -14.12800 -13.64849 -13.53075 -13.50101 -13.37378 -13.26542 -13.08496 -12.88546 -12.83145 -12.74437 -12.54633 -12.42374 -12.20113 -12.12659 -11.84057 -11.79762 -11.51142 -11.48092 -11.39520 -11.06810 -10.81576 -10.34531 -10.27454 -10.02245 -10.01851 -9.30128 -8.46956 -5.95835 1.29744 1.37961 1.41718 1.54488 1.61877 2.04985 2.25709 2.29123 2.93714 3.20287 3.50081 3.56129 3.56627 3.71226 3.76019 3.87034 3.94280 3.98421 4.05441 4.32864 4.33250 4.40746 4.45664 4.50361 4.55871 4.60888 4.65828 4.69385 4.73879 4.79708 4.81928 4.88034 4.91038 4.93899 5.02178 5.06832 5.08239 5.15828 5.19889 5.25095 5.31232 5.38186 5.40592 5.67042 5.69576 5.82417 5.90916 6.13485 6.42720 6.54577 6.59919 7.12230 7.24397 7.55956 8.11289 8.70374 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021032 B = 0.001707 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.968176 B =16401.968854 C =17154.395707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.141 4.141 3 C -0.049 4.049 4 C -0.146 4.146 5 C -0.104 4.104 6 C -0.156 4.156 7 C 0.529 3.471 8 O -0.582 6.582 9 N -0.699 5.699 10 C 0.118 3.882 11 H 0.085 0.915 12 C -0.152 4.152 13 C -0.099 4.099 14 H 0.094 0.906 15 C 0.069 3.931 16 N -0.682 5.682 17 C 0.064 3.936 18 C 0.436 3.564 19 O -0.624 6.624 20 N -0.573 5.573 21 C -0.335 4.335 22 H 0.078 0.922 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.993 3.007 26 H -0.270 1.270 27 H -0.270 1.270 28 H -0.273 1.273 29 C -0.119 4.119 30 H 0.106 0.894 31 H 0.113 0.887 32 H 0.103 0.897 33 H 0.075 0.925 34 H 0.052 0.948 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.053 0.947 39 H 0.036 0.964 40 H 0.072 0.928 41 H 0.412 0.588 42 H 0.089 0.911 43 H 0.055 0.945 44 H 0.082 0.918 45 H 0.038 0.962 46 H 0.341 0.659 47 H 0.105 0.895 48 H 0.064 0.936 49 H 0.397 0.603 50 H 0.278 0.722 51 H 0.089 0.911 52 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.525 -22.422 18.174 28.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.160 4.160 3 C -0.052 4.052 4 C -0.203 4.203 5 C -0.141 4.141 6 C -0.213 4.213 7 C 0.316 3.684 8 O -0.461 6.461 9 N -0.350 5.350 10 C 0.012 3.988 11 H 0.103 0.897 12 C -0.191 4.191 13 C -0.118 4.118 14 H 0.113 0.887 15 C -0.059 4.059 16 N -0.314 5.314 17 C -0.068 4.068 18 C 0.224 3.776 19 O -0.511 6.511 20 N -0.211 5.211 21 C -0.464 4.464 22 H 0.096 0.904 23 C -0.213 4.213 24 N -0.561 5.561 25 Si 0.817 3.183 26 H -0.196 1.196 27 H -0.195 1.195 28 H -0.198 1.198 29 C -0.158 4.158 30 H 0.125 0.875 31 H 0.131 0.869 32 H 0.121 0.879 33 H 0.094 0.906 34 H 0.071 0.929 35 H 0.108 0.892 36 H 0.103 0.897 37 H 0.109 0.891 38 H 0.072 0.928 39 H 0.056 0.944 40 H 0.091 0.909 41 H 0.249 0.751 42 H 0.108 0.892 43 H 0.074 0.926 44 H 0.100 0.900 45 H 0.057 0.943 46 H 0.159 0.841 47 H 0.123 0.877 48 H 0.081 0.919 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.108 0.892 52 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.077 -22.564 18.360 29.090 hybrid contribution -0.162 0.496 -1.468 1.558 sum -0.085 -22.068 16.892 27.792 Atomic orbital electron populations 1.24169 0.95707 1.03159 0.99613 1.22538 0.95968 0.96704 1.00750 1.19999 0.95622 0.96191 0.93414 1.21993 0.98731 0.96153 1.03419 1.21595 0.97089 0.99924 0.95514 1.21839 0.99099 0.98686 1.01701 1.20891 0.79260 0.81180 0.87036 1.90669 1.67089 1.39647 1.48722 1.45629 1.43940 1.20760 1.24710 1.21781 0.91992 0.98818 0.86170 0.89674 1.23536 1.00004 0.96584 0.99000 1.22535 0.97429 0.93493 0.98340 0.88747 1.22068 0.95747 0.90154 0.97948 1.60111 1.07199 1.16735 1.47370 1.21545 0.96397 0.92356 0.96537 1.20931 0.89183 0.85474 0.82006 1.90484 1.24574 1.79965 1.56044 1.41943 1.16438 1.20486 1.42199 1.19670 0.98001 1.01250 1.27517 0.90357 1.26046 0.98507 1.00876 0.95880 1.69667 1.19346 1.34923 1.32129 0.84923 0.77878 0.77551 0.77946 1.19589 1.19517 1.19822 1.23257 0.95981 0.93097 1.03439 0.87544 0.86918 0.87896 0.90620 0.92897 0.89169 0.89731 0.89055 0.92768 0.94449 0.90873 0.75053 0.89224 0.92639 0.89973 0.94341 0.84098 0.87683 0.91859 0.76955 0.91287 0.89200 0.87497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.69 13.70 67.78 0.93 -1.76 16 2 C -0.14 -2.33 7.29 25.65 0.19 -2.14 16 3 C -0.05 -0.70 0.63 -53.67 -0.03 -0.74 16 4 C -0.15 -1.69 7.02 71.98 0.51 -1.18 16 5 C -0.10 -1.01 4.88 30.59 0.15 -0.86 16 6 C -0.16 -1.85 9.41 71.98 0.68 -1.17 16 7 C 0.53 10.63 5.21 87.65 0.46 11.09 16 8 O -0.58 -16.94 15.63 -3.01 -0.05 -16.99 16 9 N -0.70 -10.99 5.05 -440.04 -2.22 -13.22 16 10 C 0.12 2.02 4.32 45.52 0.20 2.21 16 11 H 0.09 1.76 7.46 -2.39 -0.02 1.74 16 12 C -0.15 -2.91 7.43 31.12 0.23 -2.68 16 13 C -0.10 -1.72 3.78 -10.27 -0.04 -1.76 16 14 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 15 C 0.07 1.46 5.52 86.30 0.48 1.93 16 16 N -0.68 -20.90 6.13 -517.92 -3.17 -24.08 16 17 C 0.06 2.17 6.17 85.56 0.53 2.70 16 18 C 0.44 20.87 7.82 87.66 0.69 21.55 16 19 O -0.62 -34.84 15.78 -3.06 -0.05 -34.89 16 20 N -0.57 -29.56 5.29 -306.98 -1.62 -31.19 16 21 C -0.33 -19.13 9.68 84.04 0.81 -18.31 16 22 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 23 C -0.01 -0.71 5.50 84.93 0.47 -0.25 16 24 N -0.92 -49.63 13.05 21.66 0.28 -49.35 16 25 Si 0.99 42.99 29.55 68.60 2.03 45.01 16 26 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 27 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 28 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 29 C -0.12 -1.51 7.39 31.12 0.23 -1.28 16 30 H 0.11 1.31 8.06 -2.91 -0.02 1.28 16 31 H 0.11 1.36 5.69 -2.91 -0.02 1.34 16 32 H 0.10 1.88 7.00 -2.91 -0.02 1.86 16 33 H 0.07 0.71 7.56 -2.39 -0.02 0.69 16 34 H 0.05 0.77 7.49 -2.39 -0.02 0.75 16 35 H 0.09 0.74 7.50 -2.39 -0.02 0.72 16 36 H 0.08 0.58 7.57 -2.39 -0.02 0.56 16 37 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.05 0.70 6.62 -2.39 -0.02 0.69 16 39 H 0.04 0.57 7.22 -2.39 -0.02 0.55 16 40 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 41 H 0.41 4.54 7.54 -92.71 -0.70 3.84 16 42 H 0.09 1.69 7.90 -2.39 -0.02 1.67 16 43 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.04 0.75 7.84 -2.39 -0.02 0.73 16 46 H 0.34 11.31 8.43 -89.70 -0.76 10.56 16 47 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 48 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 49 H 0.40 19.35 7.90 -92.71 -0.73 18.61 16 50 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 51 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 52 H 0.11 1.16 8.10 -2.38 -0.02 1.14 16 Total: -1.00 -73.43 418.02 0.40 -73.03 By element: Atomic # 1 Polarization: 45.54 SS G_CDS: -1.25 Total: 44.29 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: 6.46 Total: 7.37 kcal Atomic # 7 Polarization: -111.09 SS G_CDS: -6.73 Total: -117.83 kcal Atomic # 8 Polarization: -51.78 SS G_CDS: -0.10 Total: -51.87 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal Total: -73.43 0.40 -73.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725364613.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.579 kcal (2) G-P(sol) polarization free energy of solvation -73.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds