Wall clock time and date at job start Tue Mar 31 2020 19:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50699 * 119.99979 * 2 1 4 4 C 1.53004 * 109.46801 * 125.66164 * 3 2 1 5 5 C 1.52994 * 109.47224 * 5.66609 * 3 2 1 6 6 C 1.53002 * 109.47148 * 174.65119 * 5 3 2 7 7 C 1.50696 * 109.47086 * 245.66132 * 3 2 1 8 8 O 1.21283 * 120.00214 * 7.82039 * 7 3 2 9 9 N 1.34776 * 119.99836 * 187.82514 * 7 3 2 10 10 C 1.46507 * 120.00006 * 184.15687 * 9 7 3 11 11 H 1.09002 * 112.84811 * 23.79637 * 10 9 7 12 12 C 1.53782 * 113.61561 * 154.99594 * 10 9 7 13 13 C 1.53778 * 87.08306 * 89.11301 * 12 10 9 14 14 H 1.08998 * 113.61555 * 270.80043 * 13 12 10 15 15 C 1.52996 * 113.61554 * 139.98040 * 13 12 10 16 16 N 1.46903 * 109.47372 * 175.00134 * 15 13 12 17 17 C 1.46890 * 111.00042 * 179.97438 * 16 15 13 18 18 C 1.50701 * 109.47180 * 179.97438 * 17 16 15 19 19 O 1.21300 * 119.99970 * 359.97438 * 18 17 16 20 20 N 1.34776 * 120.00516 * 180.02562 * 18 17 16 21 21 C 1.37097 * 120.00295 * 180.02562 * 20 18 17 22 22 H 1.07993 * 120.00283 * 359.97438 * 21 20 18 23 23 C 1.38951 * 119.99650 * 180.02562 * 21 20 18 24 24 N 1.31408 * 120.00615 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99754 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46958 * 59.99642 * 25 23 21 27 27 H 1.48498 * 109.47439 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.47345 * 300.00142 * 25 23 21 29 29 C 1.53780 * 113.61106 * 252.49015 * 10 9 7 30 30 H 1.08005 * 119.99700 * 355.15142 * 1 2 3 31 31 H 1.08000 * 119.99873 * 175.14928 * 1 2 3 32 32 H 1.07997 * 119.99629 * 179.72830 * 2 1 3 33 33 H 1.09001 * 109.46819 * 60.00077 * 4 3 2 34 34 H 1.09002 * 109.47081 * 179.97438 * 4 3 2 35 35 H 1.08994 * 109.47413 * 300.00460 * 4 3 2 36 36 H 1.09001 * 109.46981 * 294.64823 * 5 3 2 37 37 H 1.08999 * 109.47496 * 54.65116 * 5 3 2 38 38 H 1.09004 * 109.47046 * 66.38682 * 6 5 3 39 39 H 1.09006 * 109.47116 * 186.38173 * 6 5 3 40 40 H 1.08999 * 109.47363 * 306.38619 * 6 5 3 41 41 H 0.96998 * 120.00538 * 4.14540 * 9 7 3 42 42 H 1.08993 * 113.61314 * 203.66468 * 12 10 9 43 43 H 1.09000 * 113.61257 * 334.56444 * 12 10 9 44 44 H 1.09000 * 109.46808 * 295.00032 * 15 13 12 45 45 H 1.08997 * 109.47176 * 55.00027 * 15 13 12 46 46 H 1.00900 * 110.99509 * 303.95344 * 16 15 13 47 47 H 1.09001 * 109.47238 * 299.99559 * 17 16 15 48 48 H 1.08998 * 109.47211 * 59.99889 * 17 16 15 49 49 H 0.97006 * 119.99532 * 0.02562 * 20 18 17 50 50 H 0.96992 * 120.00410 * 180.02562 * 24 23 21 51 51 H 1.09005 * 113.61120 * 25.43340 * 29 10 9 52 52 H 1.08994 * 113.61160 * 156.33238 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0468 1.3262 1.1720 5 6 1.0754 2.4645 0.1424 6 6 1.8472 3.7788 0.2764 7 6 2.8218 1.4473 -1.2945 8 8 2.6474 0.6486 -2.1904 9 7 3.6938 2.4621 -1.4567 10 6 4.3628 2.6541 -2.7459 11 1 3.8090 2.2208 -3.5788 12 6 4.8166 4.1022 -2.9948 13 6 6.1379 3.7236 -2.3051 14 1 6.1259 3.8745 -1.2257 15 6 7.3740 4.3264 -2.9756 16 7 8.5670 4.0082 -2.1797 17 6 9.7759 4.5718 -2.7949 18 6 10.9764 4.2262 -1.9521 19 8 10.8384 3.5747 -0.9382 20 7 12.2034 4.6417 -2.3241 21 6 13.2955 4.3267 -1.5576 22 1 13.1727 3.7461 -0.6554 23 6 14.5603 4.7556 -1.9410 24 7 14.7098 5.4626 -3.0386 25 14 16.0484 4.3271 -0.8962 26 1 16.1819 2.8508 -0.8068 27 1 17.2705 4.8974 -1.5178 28 1 15.8758 4.8919 0.4663 29 6 5.8526 2.2732 -2.7294 30 1 -0.5400 0.9320 0.0791 31 1 -0.5400 -0.9320 -0.0791 32 1 1.8500 -0.9353 0.0044 33 1 3.7508 0.5002 1.0706 34 1 3.5922 2.2700 1.1718 35 1 2.4984 1.2232 2.1083 36 1 0.4358 2.5070 -0.7391 37 1 0.4614 2.3116 1.0299 38 1 2.3723 3.9884 -0.6555 39 1 1.1503 4.5891 0.4910 40 1 2.5687 3.6952 1.0891 41 1 3.8783 3.0655 -0.7200 42 1 4.9301 4.3489 -4.0503 43 1 4.2344 4.8426 -2.4463 44 1 7.4835 3.9100 -3.9769 45 1 7.2598 5.4083 -3.0424 46 1 8.4626 4.3274 -1.2282 47 1 9.9020 4.1567 -3.7949 48 1 9.6786 5.6554 -2.8609 49 1 12.3136 5.1636 -3.1344 50 1 15.5928 5.7617 -3.3064 51 1 6.1066 1.5371 -1.9667 52 1 6.2493 2.0199 -3.7125 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725364614.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:00 Heat of formation + Delta-G solvation = -35.052789 kcal Electronic energy + Delta-G solvation = -28930.103366 eV Core-core repulsion = 24930.651245 eV Total energy + Delta-G solvation = -3999.452121 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.02370 -39.23724 -38.18420 -36.89239 -35.27260 -33.92936 -33.50155 -31.90875 -31.21078 -30.00004 -28.48428 -25.92351 -25.81502 -25.42003 -23.90232 -23.05830 -22.06951 -21.47236 -19.64909 -19.11598 -18.89094 -17.86713 -17.01762 -16.50444 -16.11329 -15.72519 -15.70532 -15.48686 -15.18174 -14.78352 -14.59116 -14.36574 -14.01944 -13.93139 -13.81261 -13.64243 -13.22445 -12.97242 -12.89240 -12.65425 -12.49278 -12.40590 -12.25054 -12.09618 -11.75370 -11.70918 -11.54147 -11.47663 -11.19473 -11.01896 -10.97186 -10.96074 -10.57866 -10.43960 -10.31806 -10.20287 -10.03555 -9.63373 -9.49510 -9.19218 -8.43876 -8.02267 -7.94740 -6.41141 -3.82018 1.89331 2.38343 2.97283 3.20392 3.25969 3.30446 3.91804 4.06035 4.13004 4.22764 4.25590 4.33394 4.40960 4.58260 4.61890 4.72860 4.79175 4.87515 4.96360 5.00973 5.10590 5.17729 5.26261 5.26402 5.34064 5.37493 5.42619 5.46043 5.51382 5.53574 5.54121 5.59121 5.67510 5.70835 5.74880 5.82865 5.83264 5.99247 6.01770 6.04043 6.09265 6.27256 6.27889 6.40879 6.45120 7.23851 7.25087 7.55414 7.68850 7.98709 8.06847 8.62083 9.18369 9.55055 10.06724 10.76536 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022308 B = 0.001707 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.845215 B =16398.934744 C =16888.959907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.123 4.123 3 C -0.053 4.053 4 C -0.144 4.144 5 C -0.112 4.112 6 C -0.176 4.176 7 C 0.530 3.470 8 O -0.533 6.533 9 N -0.710 5.710 10 C 0.114 3.886 11 H 0.100 0.900 12 C -0.141 4.141 13 C -0.105 4.105 14 H 0.088 0.912 15 C 0.069 3.931 16 N -0.667 5.667 17 C 0.051 3.949 18 C 0.441 3.559 19 O -0.584 6.584 20 N -0.564 5.564 21 C -0.300 4.300 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.274 1.274 29 C -0.134 4.134 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.113 0.887 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.402 0.598 42 H 0.096 0.904 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.026 0.974 46 H 0.347 0.653 47 H 0.085 0.915 48 H 0.042 0.958 49 H 0.392 0.608 50 H 0.272 0.728 51 H 0.072 0.928 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.482 -1.474 3.102 28.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.141 4.141 3 C -0.056 4.056 4 C -0.202 4.202 5 C -0.150 4.150 6 C -0.233 4.233 7 C 0.316 3.684 8 O -0.409 6.409 9 N -0.364 5.364 10 C 0.008 3.992 11 H 0.118 0.882 12 C -0.179 4.179 13 C -0.123 4.123 14 H 0.107 0.893 15 C -0.061 4.061 16 N -0.300 5.300 17 C -0.082 4.082 18 C 0.226 3.774 19 O -0.468 6.468 20 N -0.201 5.201 21 C -0.430 4.430 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.172 4.172 30 H 0.120 0.880 31 H 0.118 0.882 32 H 0.131 0.869 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.239 0.761 42 H 0.114 0.886 43 H 0.089 0.911 44 H 0.091 0.909 45 H 0.045 0.955 46 H 0.166 0.834 47 H 0.103 0.897 48 H 0.060 0.940 49 H 0.225 0.775 50 H 0.082 0.918 51 H 0.091 0.909 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -28.426 -3.017 2.755 28.718 hybrid contribution 0.985 1.382 0.430 1.751 sum -27.440 -1.635 3.185 27.673 Atomic orbital electron populations 1.23940 0.95865 1.02270 1.00836 1.22469 0.95693 0.96451 0.99506 1.19943 0.96184 0.95678 0.93781 1.21956 0.98479 1.02896 0.96843 1.21620 0.97379 0.92976 1.02980 1.22218 1.01275 0.97101 1.02688 1.20376 0.78907 0.80329 0.88789 1.90704 1.65321 1.41562 1.43309 1.45998 1.43989 1.31871 1.14523 1.21925 0.93847 0.96899 0.86485 0.88210 1.23366 0.96683 0.95727 1.02158 1.22551 0.93312 0.96603 0.99865 0.89337 1.21968 0.89283 0.97187 0.97639 1.60046 1.00465 1.63643 1.05799 1.21665 0.90538 0.97130 0.98871 1.19834 0.84179 0.85349 0.88033 1.90520 1.85474 1.43268 1.27535 1.41861 1.05258 1.48186 1.24755 1.19656 0.84457 1.32030 1.06831 0.87991 1.25259 0.99099 0.96728 0.96840 1.69599 1.24697 1.36817 1.23232 0.85915 0.79864 0.78895 0.79522 1.19887 1.20978 1.19942 1.23362 0.94249 0.96838 1.02792 0.88002 0.88178 0.86922 0.91602 0.91470 0.91043 0.91165 0.90276 0.91672 0.91876 0.91563 0.76066 0.88584 0.91101 0.90948 0.95547 0.83368 0.89681 0.94019 0.77467 0.91833 0.90902 0.89073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.38 13.71 29.01 0.40 -0.98 16 2 C -0.12 -1.04 8.01 -36.03 -0.29 -1.33 16 3 C -0.05 -0.40 0.72 -156.82 -0.11 -0.52 16 4 C -0.14 -0.91 7.79 37.16 0.29 -0.62 16 5 C -0.11 -0.66 3.64 -26.73 -0.10 -0.75 16 6 C -0.18 -0.85 8.44 37.16 0.31 -0.54 16 7 C 0.53 5.52 6.39 -10.99 -0.07 5.45 16 8 O -0.53 -7.74 15.69 5.55 0.09 -7.65 16 9 N -0.71 -6.06 3.92 -53.01 -0.21 -6.27 16 10 C 0.11 1.05 4.30 -67.11 -0.29 0.76 16 11 H 0.10 1.05 7.52 -51.93 -0.39 0.66 16 12 C -0.14 -1.06 7.39 -25.92 -0.19 -1.26 16 13 C -0.10 -1.01 3.78 -89.81 -0.34 -1.34 16 14 H 0.09 0.85 8.13 -51.93 -0.42 0.42 16 15 C 0.07 0.80 5.52 -3.82 -0.02 0.78 16 16 N -0.67 -10.59 6.13 -115.07 -0.70 -11.30 16 17 C 0.05 0.89 6.17 -4.98 -0.03 0.86 16 18 C 0.44 10.47 7.82 -10.99 -0.09 10.38 16 19 O -0.58 -15.95 15.78 5.54 0.09 -15.87 16 20 N -0.56 -14.39 5.29 -10.96 -0.06 -14.44 16 21 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 16 22 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.59 13.05 55.50 0.72 -23.87 16 25 Si 0.93 21.12 29.55 -169.99 -5.02 16.10 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 29 C -0.13 -1.41 7.43 -25.92 -0.19 -1.61 16 30 H 0.10 0.61 5.71 -52.48 -0.30 0.31 16 31 H 0.10 0.63 8.06 -52.49 -0.42 0.21 16 32 H 0.11 1.00 8.06 -52.49 -0.42 0.58 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.35 5.21 -51.93 -0.27 0.08 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.47 7.64 -51.93 -0.40 0.07 16 37 H 0.08 0.38 7.36 -51.93 -0.38 0.00 16 38 H 0.06 0.35 5.69 -51.93 -0.30 0.05 16 39 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.07 0.27 5.98 -51.93 -0.31 -0.04 16 41 H 0.40 2.67 5.42 -40.82 -0.22 2.45 16 42 H 0.10 0.67 8.10 -51.93 -0.42 0.24 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.83 7.84 -51.93 -0.41 0.42 16 45 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 46 H 0.35 5.65 8.42 -39.29 -0.33 5.32 16 47 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 48 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 50 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 51 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 52 H 0.09 0.97 7.90 -51.93 -0.41 0.56 16 LS Contribution 412.54 15.07 6.22 6.22 Total: -1.00 -33.50 412.54 -8.46 -41.96 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: -8.62 Total: 13.90 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -0.96 Total: 1.22 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: -0.25 Total: -55.88 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: 0.17 Total: -23.51 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.50 -8.46 -41.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725364614.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.904 kcal (2) G-P(sol) polarization free energy of solvation -33.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds