Wall clock time and date at job start Tue Mar 31 2020 20:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.53005 * 109.47264 * 295.00560 * 3 2 1 6 6 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 7 7 O 1.21274 * 119.99793 * 0.02562 * 6 3 2 8 8 N 1.34774 * 119.99911 * 180.02562 * 6 3 2 9 9 C 1.46503 * 119.99721 * 180.02562 * 8 6 3 10 10 H 1.09000 * 115.55726 * 9.30036 * 9 8 6 11 11 C 1.53052 * 117.50665 * 223.54323 * 9 8 6 12 12 C 1.52737 * 59.94196 * 252.53213 * 11 9 8 13 13 C 1.53217 * 117.83965 * 107.73745 * 12 11 9 14 14 C 1.53263 * 108.62540 * 196.98473 * 13 12 11 15 15 N 1.46818 * 109.44857 * 304.42391 * 14 13 12 16 16 C 1.46893 * 111.00349 * 189.19521 * 15 14 13 17 17 C 1.50705 * 109.46628 * 65.29409 * 16 15 14 18 18 O 1.21296 * 120.00037 * 359.97438 * 17 16 15 19 19 N 1.34774 * 120.00066 * 179.97438 * 17 16 15 20 20 C 1.37094 * 120.00197 * 179.97438 * 19 17 16 21 21 H 1.07993 * 119.99976 * 0.02562 * 20 19 17 22 22 C 1.38952 * 119.99732 * 180.02562 * 20 19 17 23 23 N 1.31405 * 120.00724 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 119.99714 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46918 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47372 * 119.99888 * 24 22 20 27 27 H 1.48498 * 109.46813 * 239.99888 * 24 22 20 28 28 C 1.46811 * 111.58002 * 64.81638 * 15 14 13 29 29 C 1.53220 * 117.83931 * 252.26220 * 12 11 9 30 30 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 33 33 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 34 34 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 35 35 H 1.09001 * 109.46897 * 179.97438 * 5 3 2 36 36 H 1.08997 * 109.46584 * 299.99168 * 5 3 2 37 37 H 1.08999 * 109.47123 * 59.99430 * 5 3 2 38 38 H 0.97000 * 120.00167 * 0.02562 * 8 6 3 39 39 H 1.09005 * 117.50021 * 0.02562 * 11 9 8 40 40 H 1.08991 * 117.50796 * 145.05845 * 11 9 8 41 41 H 1.09004 * 109.60712 * 316.71832 * 13 12 11 42 42 H 1.08997 * 109.61372 * 77.23801 * 13 12 11 43 43 H 1.08999 * 109.47228 * 184.43528 * 14 13 12 44 44 H 1.08995 * 109.47657 * 64.42094 * 14 13 12 45 45 H 1.09003 * 109.47349 * 185.28735 * 16 15 14 46 46 H 1.08998 * 109.47494 * 305.29686 * 16 15 14 47 47 H 0.97001 * 120.00019 * 0.02562 * 19 17 16 48 48 H 0.97002 * 120.00916 * 180.02562 * 23 22 20 49 49 H 1.09000 * 109.47143 * 175.18989 * 28 15 14 50 50 H 1.09001 * 109.47063 * 55.17963 * 28 15 14 51 51 H 1.09001 * 109.61045 * 282.76082 * 29 12 11 52 52 H 1.09003 * 109.60851 * 43.10087 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 3.5419 1.4443 0.1238 7 8 4.1450 0.3952 0.2037 8 7 4.2148 2.6119 0.1458 9 6 5.6749 2.6136 0.2656 10 1 6.1555 1.6396 0.1733 11 6 6.3041 3.6246 1.2272 12 6 6.4263 3.8257 -0.2819 13 6 5.6023 4.9469 -0.9234 14 6 5.5388 4.7041 -2.4354 15 7 6.9017 4.5990 -2.9712 16 6 6.8902 4.5844 -4.4400 17 6 6.3880 5.9100 -4.9515 18 8 6.0704 6.7810 -4.1694 19 7 6.2917 6.1278 -6.2781 20 6 5.8344 7.3335 -6.7434 21 1 5.5516 8.1090 -6.0470 22 6 5.7347 7.5578 -8.1111 23 7 6.0792 6.6144 -8.9585 24 14 5.1122 9.2010 -8.7452 25 1 4.7933 10.0862 -7.5963 26 1 6.1593 9.8365 -9.5847 27 1 3.8884 8.9862 -9.5585 28 6 7.6020 3.4236 -2.4389 29 6 7.7952 3.5859 -0.9272 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.9982 3.1544 -1.3071 36 1 2.0698 1.5876 -2.1491 37 1 0.5489 2.1253 -1.3968 38 1 3.7324 3.4510 0.0823 39 1 5.6314 4.2881 1.7709 40 1 7.1985 3.3157 1.7680 41 1 4.5939 4.9424 -0.5096 42 1 6.0769 5.9082 -0.7268 43 1 5.0227 5.5355 -2.9155 44 1 4.9984 3.7783 -2.6324 45 1 7.9010 4.4118 -4.8096 46 1 6.2341 3.7876 -4.7904 47 1 6.5454 5.4312 -6.9036 48 1 6.0100 6.7711 -9.9133 49 1 8.5749 3.3308 -2.9216 50 1 7.0117 2.5288 -2.6359 51 1 8.4464 4.4376 -0.7309 52 1 8.2411 2.6814 -0.5135 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731377642.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:29 Heat of formation + Delta-G solvation = -59.304544 kcal Electronic energy + Delta-G solvation = -30058.849434 eV Core-core repulsion = 26058.345678 eV Total energy + Delta-G solvation = -4000.503756 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.54346 -39.35025 -38.16599 -36.22486 -35.58220 -33.91445 -33.34412 -31.30234 -30.81949 -30.37289 -29.62304 -26.43334 -25.66170 -24.17835 -23.34225 -23.07004 -21.52398 -21.32907 -20.05657 -19.19479 -18.74342 -17.85656 -17.29126 -16.48465 -15.99071 -15.72627 -15.41231 -14.93334 -14.80156 -14.69628 -14.45656 -14.11337 -13.97295 -13.79502 -13.71001 -13.57423 -13.06976 -12.89924 -12.77490 -12.46717 -12.32165 -12.27955 -12.03740 -11.91820 -11.83054 -11.63927 -11.49098 -11.32142 -11.13382 -11.08825 -11.02651 -10.97486 -10.68124 -10.37696 -10.31222 -10.22885 -9.98923 -9.74963 -9.46934 -8.79508 -8.39421 -7.96930 -7.79821 -6.41764 -3.82497 2.40045 2.87445 3.15676 3.26266 3.33140 3.69755 3.90881 4.02896 4.25197 4.35463 4.46268 4.56337 4.60239 4.61382 4.69725 4.88323 4.97939 5.06936 5.07631 5.18378 5.24736 5.26715 5.34238 5.41017 5.49354 5.51788 5.56253 5.58034 5.61050 5.66241 5.70466 5.72889 5.80543 5.82388 5.89399 5.91366 5.97172 6.02827 6.05997 6.07927 6.17457 6.29543 6.32670 6.42037 6.49215 7.28571 7.35327 7.48426 7.55256 8.03044 8.06951 8.62082 9.18274 9.55086 10.06747 10.76096 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011808 B = 0.002604 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.678653 B =10749.840514 C =12272.384594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.105 4.105 3 C -0.111 4.111 4 H 0.096 0.904 5 C -0.148 4.148 6 C 0.520 3.480 7 O -0.541 6.541 8 N -0.699 5.699 9 C 0.083 3.917 10 H 0.133 0.867 11 C -0.184 4.184 12 C -0.121 4.121 13 C -0.071 4.071 14 C 0.059 3.941 15 N -0.515 5.515 16 C 0.047 3.953 17 C 0.445 3.555 18 O -0.577 6.577 19 N -0.565 5.565 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.902 5.902 24 Si 0.928 3.072 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.058 3.942 29 C -0.074 4.074 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.401 0.599 39 H 0.096 0.904 40 H 0.101 0.899 41 H 0.056 0.944 42 H 0.081 0.919 43 H 0.103 0.897 44 H 0.020 0.980 45 H 0.088 0.912 46 H 0.045 0.955 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.074 0.926 50 H 0.029 0.971 51 H 0.079 0.921 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.323 -11.319 17.927 21.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.143 4.143 3 C -0.132 4.132 4 H 0.114 0.886 5 C -0.205 4.205 6 C 0.307 3.693 7 O -0.418 6.418 8 N -0.349 5.349 9 C -0.023 4.023 10 H 0.151 0.849 11 C -0.223 4.223 12 C -0.122 4.122 13 C -0.109 4.109 14 C -0.069 4.069 15 N -0.239 5.239 16 C -0.085 4.085 17 C 0.230 3.770 18 O -0.462 6.462 19 N -0.202 5.202 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.070 4.070 29 C -0.112 4.112 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.238 0.762 39 H 0.114 0.886 40 H 0.119 0.881 41 H 0.074 0.926 42 H 0.100 0.900 43 H 0.121 0.879 44 H 0.038 0.962 45 H 0.106 0.894 46 H 0.063 0.937 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.092 0.908 50 H 0.047 0.953 51 H 0.098 0.902 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.876 -11.085 18.442 22.063 hybrid contribution -0.710 0.088 -1.108 1.319 sum -5.586 -10.998 17.334 21.275 Atomic orbital electron populations 1.21850 0.95412 1.01938 1.01951 1.21337 0.95399 0.94060 1.03484 1.21373 0.91497 0.99605 1.00725 0.88558 1.21855 1.02565 1.00397 0.95729 1.20724 0.90019 0.83371 0.75146 1.90680 1.70351 1.31419 1.49345 1.45485 1.06346 1.08934 1.74141 1.21781 0.80319 0.96262 1.03921 0.84895 1.23547 1.03120 1.02772 0.92864 1.22072 0.97812 0.97601 0.94732 1.21098 0.97525 0.97474 0.94829 1.22198 0.89268 1.01008 0.94415 1.61296 1.17776 1.39153 1.05717 1.21827 1.01652 0.96876 0.88119 1.19757 0.84878 0.89207 0.83152 1.90476 1.54191 1.46051 1.55449 1.41888 1.57609 1.15761 1.04926 1.19733 1.39551 0.92218 0.91179 0.87880 1.25258 0.97702 0.99235 0.95801 1.69616 1.48401 1.33338 1.02993 0.85817 0.78235 0.81551 0.78840 1.19230 1.20755 1.20805 1.22078 0.98734 0.91207 0.95015 1.21172 0.93933 1.01835 0.94243 0.92736 0.92448 0.92284 0.91213 0.91253 0.92014 0.91847 0.90968 0.76229 0.88605 0.88100 0.92578 0.89998 0.87870 0.96227 0.89396 0.93704 0.77515 0.91939 0.90765 0.95256 0.90209 0.91521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.67 37.16 0.36 -0.65 16 2 C -0.10 -0.90 4.75 -26.73 -0.13 -1.02 16 3 C -0.11 -0.92 2.72 -91.77 -0.25 -1.17 16 4 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 5 C -0.15 -1.15 8.85 37.16 0.33 -0.83 16 6 C 0.52 5.87 7.15 -10.99 -0.08 5.80 16 7 O -0.54 -8.09 15.49 5.56 0.09 -8.00 16 8 N -0.70 -7.01 5.24 -53.90 -0.28 -7.29 16 9 C 0.08 0.89 6.11 -68.02 -0.42 0.48 16 10 H 0.13 1.61 7.40 -51.93 -0.38 1.23 16 11 C -0.18 -1.71 9.93 -26.84 -0.27 -1.97 16 12 C -0.12 -1.32 2.02 -154.54 -0.31 -1.64 16 13 C -0.07 -0.90 5.67 -26.48 -0.15 -1.05 16 14 C 0.06 0.93 5.12 -3.73 -0.02 0.91 16 15 N -0.51 -8.48 4.33 -235.88 -1.02 -9.50 16 16 C 0.05 0.84 5.45 -4.98 -0.03 0.81 16 17 C 0.44 10.34 7.42 -10.98 -0.08 10.26 16 18 O -0.58 -15.12 13.89 5.54 0.08 -15.05 16 19 N -0.57 -14.20 5.29 -10.96 -0.06 -14.26 16 20 C -0.30 -8.19 9.68 -14.93 -0.14 -8.34 16 21 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.48 13.05 55.50 0.72 -23.75 16 24 Si 0.93 20.89 29.55 -169.99 -5.02 15.87 16 25 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 28 C 0.06 0.76 5.49 -3.74 -0.02 0.74 16 29 C -0.07 -0.83 5.87 -26.48 -0.16 -0.98 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.36 6.57 -51.93 -0.34 0.02 16 33 H 0.07 0.66 7.95 -51.93 -0.41 0.24 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.46 7.57 -51.93 -0.39 0.07 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.47 6.56 -51.93 -0.34 0.13 16 38 H 0.40 3.36 6.27 -40.82 -0.26 3.10 16 39 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.06 0.59 6.18 -51.93 -0.32 0.27 16 42 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 43 H 0.10 1.99 5.71 -51.93 -0.30 1.69 16 44 H 0.02 0.30 8.12 -51.93 -0.42 -0.12 16 45 H 0.09 1.44 7.94 -51.93 -0.41 1.03 16 46 H 0.04 0.76 8.13 -51.93 -0.42 0.34 16 47 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 48 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 49 H 0.07 0.91 7.95 -51.93 -0.41 0.49 16 50 H 0.03 0.39 8.12 -51.93 -0.42 -0.03 16 51 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 52 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 LS Contribution 408.75 15.07 6.16 6.16 Total: -1.00 -32.12 408.75 -9.69 -41.81 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: -8.89 Total: 12.20 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -1.46 Total: 1.81 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: -0.64 Total: -54.80 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: 0.16 Total: -23.05 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.12 -9.69 -41.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731377642.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.496 kcal (2) G-P(sol) polarization free energy of solvation -32.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds