Wall clock time and date at job start Tue Mar 31 2020 20:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.53005 * 109.47264 * 295.00560 * 3 2 1 6 6 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 7 7 O 1.21274 * 119.99793 * 0.02562 * 6 3 2 8 8 N 1.34774 * 119.99911 * 180.02562 * 6 3 2 9 9 C 1.46503 * 119.99721 * 180.02562 * 8 6 3 10 10 H 1.09000 * 115.55726 * 9.30036 * 9 8 6 11 11 C 1.53052 * 117.50665 * 223.54323 * 9 8 6 12 12 C 1.52737 * 59.94196 * 252.53213 * 11 9 8 13 13 C 1.53217 * 117.83965 * 107.73745 * 12 11 9 14 14 C 1.53263 * 108.62540 * 196.98473 * 13 12 11 15 15 N 1.46818 * 109.44857 * 304.42391 * 14 13 12 16 16 C 1.46893 * 111.00349 * 189.19521 * 15 14 13 17 17 C 1.50705 * 109.46628 * 65.29409 * 16 15 14 18 18 O 1.21296 * 120.00037 * 359.97438 * 17 16 15 19 19 N 1.34774 * 120.00066 * 179.97438 * 17 16 15 20 20 C 1.37094 * 120.00197 * 179.97438 * 19 17 16 21 21 H 1.07993 * 119.99976 * 0.02562 * 20 19 17 22 22 C 1.38952 * 119.99732 * 180.02562 * 20 19 17 23 23 N 1.31405 * 120.00724 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 119.99714 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46918 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47372 * 119.99888 * 24 22 20 27 27 H 1.48498 * 109.46813 * 239.99888 * 24 22 20 28 28 C 1.46811 * 111.58002 * 64.81638 * 15 14 13 29 29 C 1.53220 * 117.83931 * 252.26220 * 12 11 9 30 30 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 33 33 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 34 34 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 35 35 H 1.09001 * 109.46897 * 179.97438 * 5 3 2 36 36 H 1.08997 * 109.46584 * 299.99168 * 5 3 2 37 37 H 1.08999 * 109.47123 * 59.99430 * 5 3 2 38 38 H 0.97000 * 120.00167 * 0.02562 * 8 6 3 39 39 H 1.09005 * 117.50021 * 0.02562 * 11 9 8 40 40 H 1.08991 * 117.50796 * 145.05845 * 11 9 8 41 41 H 1.09004 * 109.60712 * 316.71832 * 13 12 11 42 42 H 1.08997 * 109.61372 * 77.23801 * 13 12 11 43 43 H 1.08999 * 109.47228 * 184.43528 * 14 13 12 44 44 H 1.08995 * 109.47657 * 64.42094 * 14 13 12 45 45 H 1.09003 * 109.47349 * 185.28735 * 16 15 14 46 46 H 1.08998 * 109.47494 * 305.29686 * 16 15 14 47 47 H 0.97001 * 120.00019 * 0.02562 * 19 17 16 48 48 H 0.97002 * 120.00916 * 180.02562 * 23 22 20 49 49 H 1.09000 * 109.47143 * 175.18989 * 28 15 14 50 50 H 1.09001 * 109.47063 * 55.17963 * 28 15 14 51 51 H 1.09001 * 109.61045 * 282.76082 * 29 12 11 52 52 H 1.09003 * 109.60851 * 43.10087 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 3.5419 1.4443 0.1238 7 8 4.1450 0.3952 0.2037 8 7 4.2148 2.6119 0.1458 9 6 5.6749 2.6136 0.2656 10 1 6.1555 1.6396 0.1733 11 6 6.3041 3.6246 1.2272 12 6 6.4263 3.8257 -0.2819 13 6 5.6023 4.9469 -0.9234 14 6 5.5388 4.7041 -2.4354 15 7 6.9017 4.5990 -2.9712 16 6 6.8902 4.5844 -4.4400 17 6 6.3880 5.9100 -4.9515 18 8 6.0704 6.7810 -4.1694 19 7 6.2917 6.1278 -6.2781 20 6 5.8344 7.3335 -6.7434 21 1 5.5516 8.1090 -6.0470 22 6 5.7347 7.5578 -8.1111 23 7 6.0792 6.6144 -8.9585 24 14 5.1122 9.2010 -8.7452 25 1 4.7933 10.0862 -7.5963 26 1 6.1593 9.8365 -9.5847 27 1 3.8884 8.9862 -9.5585 28 6 7.6020 3.4236 -2.4389 29 6 7.7952 3.5859 -0.9272 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.9982 3.1544 -1.3071 36 1 2.0698 1.5876 -2.1491 37 1 0.5489 2.1253 -1.3968 38 1 3.7324 3.4510 0.0823 39 1 5.6314 4.2881 1.7709 40 1 7.1985 3.3157 1.7680 41 1 4.5939 4.9424 -0.5096 42 1 6.0769 5.9082 -0.7268 43 1 5.0227 5.5355 -2.9155 44 1 4.9984 3.7783 -2.6324 45 1 7.9010 4.4118 -4.8096 46 1 6.2341 3.7876 -4.7904 47 1 6.5454 5.4312 -6.9036 48 1 6.0100 6.7711 -9.9133 49 1 8.5749 3.3308 -2.9216 50 1 7.0117 2.5288 -2.6359 51 1 8.4464 4.4376 -0.7309 52 1 8.2411 2.6814 -0.5135 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731377642.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:28 Heat of formation + Delta-G solvation = -80.989145 kcal Electronic energy + Delta-G solvation = -30059.789749 eV Core-core repulsion = 26058.345678 eV Total energy + Delta-G solvation = -4001.444071 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.46453 -40.56989 -39.68070 -37.45023 -36.36001 -35.86615 -34.30411 -33.28136 -31.92125 -31.44880 -30.38184 -27.99819 -26.37398 -25.90661 -24.40838 -23.86487 -22.63695 -22.14086 -21.02467 -20.84711 -19.87499 -19.67941 -18.15650 -17.70118 -17.39644 -16.69337 -16.51904 -16.45339 -16.27018 -15.72146 -15.61222 -15.36934 -15.31542 -15.12625 -14.83068 -14.40943 -14.26616 -13.89340 -13.80153 -13.64236 -13.49229 -13.28424 -13.08395 -12.98577 -12.80646 -12.79908 -12.61083 -12.51650 -12.49486 -12.39051 -12.14886 -12.10146 -11.75489 -11.69780 -11.61218 -11.55668 -11.32407 -10.91031 -10.67717 -10.19037 -9.98208 -9.65299 -9.16509 -8.45606 -5.94080 1.36843 1.42013 1.53525 1.56158 2.06176 2.07926 2.28781 2.75028 2.90551 3.21245 3.39564 3.61041 3.69119 3.74084 3.81734 3.82366 3.92483 3.97619 4.23712 4.27771 4.30006 4.35639 4.48362 4.49032 4.52981 4.55434 4.57792 4.61831 4.65181 4.68723 4.83149 4.86926 4.92133 4.95417 5.00056 5.03333 5.07058 5.09395 5.16120 5.19493 5.28950 5.33616 5.35734 5.42204 5.46280 5.53061 5.92178 6.12073 6.28275 6.48023 6.61691 7.14136 7.19416 7.57689 8.13091 8.72187 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011808 B = 0.002604 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.678653 B =10749.840514 C =12272.384594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.104 4.104 3 C -0.104 4.104 4 H 0.122 0.878 5 C -0.146 4.146 6 C 0.516 3.484 7 O -0.583 6.583 8 N -0.691 5.691 9 C 0.076 3.924 10 H 0.120 0.880 11 C -0.161 4.161 12 C -0.128 4.128 13 C -0.064 4.064 14 C 0.064 3.936 15 N -0.530 5.530 16 C 0.057 3.943 17 C 0.444 3.556 18 O -0.610 6.610 19 N -0.576 5.576 20 C -0.328 4.328 21 H 0.080 0.920 22 C -0.015 4.015 23 N -0.923 5.923 24 Si 0.992 3.008 25 H -0.272 1.272 26 H -0.272 1.272 27 H -0.271 1.271 28 C 0.058 3.942 29 C -0.071 4.071 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.050 0.950 35 H 0.065 0.935 36 H 0.044 0.956 37 H 0.089 0.911 38 H 0.410 0.590 39 H 0.108 0.892 40 H 0.116 0.884 41 H 0.077 0.923 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.021 0.979 45 H 0.108 0.892 46 H 0.058 0.942 47 H 0.395 0.605 48 H 0.277 0.723 49 H 0.086 0.914 50 H 0.028 0.972 51 H 0.076 0.924 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.759 -11.349 19.061 22.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.142 4.142 3 C -0.125 4.125 4 H 0.140 0.860 5 C -0.203 4.203 6 C 0.304 3.696 7 O -0.463 6.463 8 N -0.342 5.342 9 C -0.030 4.030 10 H 0.138 0.862 11 C -0.199 4.199 12 C -0.129 4.129 13 C -0.102 4.102 14 C -0.064 4.064 15 N -0.255 5.255 16 C -0.074 4.074 17 C 0.231 3.769 18 O -0.495 6.495 19 N -0.214 5.214 20 C -0.458 4.458 21 H 0.098 0.902 22 C -0.214 4.214 23 N -0.564 5.564 24 Si 0.816 3.184 25 H -0.196 1.196 26 H -0.197 1.197 27 H -0.197 1.197 28 C -0.070 4.070 29 C -0.109 4.109 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.064 0.936 37 H 0.108 0.892 38 H 0.248 0.752 39 H 0.126 0.874 40 H 0.135 0.865 41 H 0.095 0.905 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.039 0.961 45 H 0.126 0.874 46 H 0.076 0.924 47 H 0.228 0.772 48 H 0.086 0.914 49 H 0.104 0.896 50 H 0.046 0.954 51 H 0.095 0.905 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.307 -11.114 19.580 23.131 hybrid contribution -0.552 0.072 -1.426 1.531 sum -5.859 -11.042 18.153 22.041 Atomic orbital electron populations 1.21821 0.93579 1.02457 1.02808 1.21307 0.96918 0.93982 1.01989 1.21403 0.89410 0.99801 1.01916 0.86014 1.21855 1.03612 1.00172 0.94674 1.21275 0.91207 0.82924 0.74191 1.90659 1.71377 1.32863 1.51418 1.45457 1.06249 1.09102 1.73365 1.21731 0.80588 0.95683 1.05023 0.86237 1.23618 1.03437 1.01266 0.91584 1.21955 0.97517 0.97099 0.96345 1.20994 0.99046 0.97380 0.92749 1.22057 0.88792 0.99309 0.96259 1.61321 1.18320 1.41243 1.04616 1.21710 1.02607 0.93630 0.89484 1.20690 0.83218 0.90694 0.82282 1.90454 1.55120 1.47842 1.56118 1.41960 1.58317 1.15320 1.05762 1.19684 1.41518 0.92996 0.91581 0.90191 1.26039 0.97347 1.02587 0.95449 1.69680 1.48537 1.34774 1.03421 0.84878 0.78122 0.77346 0.78047 1.19643 1.19735 1.19666 1.22179 0.98686 0.89630 0.96461 1.21179 0.94150 1.02772 0.92765 0.91491 0.92204 0.91718 0.92406 0.93145 0.91595 0.93636 0.89217 0.75173 0.87415 0.86547 0.90512 0.91611 0.91853 0.96051 0.87394 0.92431 0.77187 0.91381 0.89610 0.95353 0.90526 0.89304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.67 71.98 0.70 -1.02 16 2 C -0.10 -1.72 4.75 30.59 0.15 -1.58 16 3 C -0.10 -1.60 2.72 -11.54 -0.03 -1.63 16 4 H 0.12 1.27 8.14 -2.38 -0.02 1.25 16 5 C -0.15 -2.09 8.85 71.98 0.64 -1.45 16 6 C 0.52 11.26 7.15 87.66 0.63 11.89 16 7 O -0.58 -17.54 15.49 -3.01 -0.05 -17.58 16 8 N -0.69 -12.87 5.24 -442.83 -2.32 -15.19 16 9 C 0.08 1.50 6.11 44.93 0.27 1.78 16 10 H 0.12 2.77 7.40 -2.39 -0.02 2.75 16 11 C -0.16 -2.52 9.93 30.52 0.30 -2.22 16 12 C -0.13 -2.57 2.02 -52.20 -0.11 -2.68 16 13 C -0.06 -1.56 5.67 30.76 0.17 -1.38 16 14 C 0.06 2.02 5.12 86.41 0.44 2.46 16 15 N -0.53 -17.24 4.33 -900.20 -3.90 -21.14 16 16 C 0.06 2.03 5.45 85.56 0.47 2.50 16 17 C 0.44 21.13 7.42 87.66 0.65 21.78 16 18 O -0.61 -33.04 13.89 -3.08 -0.04 -33.08 16 19 N -0.58 -29.68 5.29 -306.99 -1.62 -31.30 16 20 C -0.33 -18.58 9.68 84.04 0.81 -17.76 16 21 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 22 C -0.01 -0.79 5.50 84.93 0.47 -0.33 16 23 N -0.92 -50.05 13.05 21.66 0.28 -49.77 16 24 Si 0.99 42.84 29.55 68.60 2.03 44.87 16 25 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 26 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 27 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 28 C 0.06 1.44 5.49 86.41 0.47 1.91 16 29 C -0.07 -1.45 5.87 30.75 0.18 -1.27 16 30 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 0.67 6.57 -2.38 -0.02 0.66 16 33 H 0.06 1.09 7.95 -2.39 -0.02 1.07 16 34 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.07 0.88 7.57 -2.39 -0.02 0.87 16 36 H 0.04 0.81 8.14 -2.39 -0.02 0.80 16 37 H 0.09 0.98 6.56 -2.39 -0.02 0.96 16 38 H 0.41 6.06 6.27 -92.71 -0.58 5.48 16 39 H 0.11 1.48 8.14 -2.38 -0.02 1.46 16 40 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.08 1.50 6.18 -2.39 -0.01 1.49 16 42 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.06 2.53 5.71 -2.39 -0.01 2.52 16 44 H 0.02 0.66 8.12 -2.39 -0.02 0.64 16 45 H 0.11 3.42 7.94 -2.39 -0.02 3.40 16 46 H 0.06 1.92 8.13 -2.39 -0.02 1.90 16 47 H 0.39 19.48 7.90 -92.71 -0.73 18.75 16 48 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 49 H 0.09 1.93 7.95 -2.39 -0.02 1.91 16 50 H 0.03 0.72 8.12 -2.39 -0.02 0.70 16 51 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 52 H 0.09 1.45 8.08 -2.39 -0.02 1.43 16 Total: -1.00 -71.34 408.75 0.21 -71.14 By element: Atomic # 1 Polarization: 41.43 SS G_CDS: -0.39 Total: 41.04 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: 6.22 Total: 11.02 kcal Atomic # 7 Polarization: -109.84 SS G_CDS: -7.56 Total: -117.40 kcal Atomic # 8 Polarization: -50.57 SS G_CDS: -0.09 Total: -50.66 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -71.34 0.21 -71.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731377642.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.852 kcal (2) G-P(sol) polarization free energy of solvation -71.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds