Wall clock time and date at job start Tue Mar 31 2020 20:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50697 * 120.00355 * 2 1 4 4 H 1.09007 * 109.46748 * 0.02562 * 3 2 1 5 5 C 1.53002 * 109.47165 * 119.99710 * 3 2 1 6 6 C 1.52995 * 109.47267 * 295.00153 * 5 3 2 7 7 C 1.53001 * 109.47187 * 240.00249 * 3 2 1 8 8 C 1.50699 * 109.47045 * 64.99611 * 7 3 2 9 9 O 1.21279 * 120.00406 * 0.02562 * 8 7 3 10 10 N 1.34780 * 119.99563 * 179.97438 * 8 7 3 11 11 C 1.46499 * 120.00229 * 0.02562 * 10 8 7 12 12 C 1.46499 * 119.99546 * 180.02562 * 10 8 7 13 13 H 1.09003 * 110.27999 * 2.08991 * 12 10 8 14 14 C 1.54594 * 110.30991 * 124.29103 * 12 10 8 15 15 C 1.54937 * 102.92352 * 96.95302 * 14 12 10 16 16 N 1.48534 * 103.22551 * 37.41676 * 15 14 12 17 17 C 1.46894 * 110.99753 * 200.27592 * 16 15 14 18 18 C 1.50698 * 109.47439 * 307.39554 * 17 16 15 19 19 O 1.21291 * 119.99965 * 359.97438 * 18 17 16 20 20 N 1.34777 * 120.00306 * 179.97438 * 18 17 16 21 21 C 1.37102 * 120.00371 * 179.97438 * 20 18 17 22 22 H 1.08001 * 119.99428 * 0.02562 * 21 20 18 23 23 C 1.38939 * 120.00098 * 180.02562 * 21 20 18 24 24 N 1.31417 * 120.00137 * 180.02562 * 23 21 20 25 25 Si 1.86797 * 120.00272 * 0.02562 * 23 21 20 26 26 H 1.48493 * 109.47337 * 89.99802 * 25 23 21 27 27 H 1.48501 * 109.47560 * 209.99980 * 25 23 21 28 28 H 1.48504 * 109.47065 * 329.99575 * 25 23 21 29 29 C 1.47897 * 105.82198 * 320.79253 * 16 15 14 30 30 H 1.07995 * 119.99856 * 359.97438 * 1 2 3 31 31 H 1.07998 * 120.00167 * 180.02562 * 1 2 3 32 32 H 1.08005 * 119.99763 * 180.02562 * 2 1 3 33 33 H 1.09002 * 109.46959 * 55.00543 * 5 3 2 34 34 H 1.09001 * 109.46845 * 174.99678 * 5 3 2 35 35 H 1.09000 * 109.46988 * 299.99840 * 6 5 3 36 36 H 1.09000 * 109.46945 * 60.00383 * 6 5 3 37 37 H 1.08998 * 109.47025 * 179.97438 * 6 5 3 38 38 H 1.09004 * 109.47016 * 304.99853 * 7 3 2 39 39 H 1.09002 * 109.47172 * 185.00067 * 7 3 2 40 40 H 1.09002 * 109.47391 * 89.99442 * 11 10 8 41 41 H 1.09001 * 109.46813 * 329.99499 * 11 10 8 42 42 H 1.09004 * 109.47041 * 209.99626 * 11 10 8 43 43 H 1.08998 * 110.72513 * 215.31905 * 14 12 10 44 44 H 1.09000 * 110.71891 * 338.59664 * 14 12 10 45 45 H 1.08998 * 110.66804 * 278.98001 * 15 14 12 46 46 H 1.09000 * 110.80469 * 155.91749 * 15 14 12 47 47 H 1.08999 * 109.47144 * 67.39846 * 17 16 15 48 48 H 1.09005 * 109.47086 * 187.39618 * 17 16 15 49 49 H 0.96995 * 120.00117 * 0.02562 * 20 18 17 50 50 H 0.96996 * 120.00161 * 180.02562 * 24 23 21 51 51 H 1.09005 * 109.91555 * 265.98099 * 29 16 15 52 52 H 1.08994 * 110.08496 * 144.77329 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9432 1.3861 1.2493 6 6 2.0565 1.4307 2.4953 7 6 2.9432 1.3861 -1.2493 8 6 2.0698 1.4299 -2.4766 9 8 0.8627 1.3999 -2.3633 10 7 2.6302 1.5036 -3.7001 11 6 4.0883 1.5405 -3.8370 12 6 1.7811 1.5469 -4.8932 13 1 0.7290 1.5481 -4.6083 14 6 2.1110 2.7964 -5.7416 15 6 3.0838 2.2413 -6.8122 16 7 2.5305 0.8952 -7.1088 17 6 3.5475 0.0319 -7.7238 18 6 4.1521 0.7353 -8.9115 19 8 3.7727 1.8464 -9.2161 20 7 5.1144 0.1299 -9.6353 21 6 5.6641 0.7696 -10.7162 22 1 5.3262 1.7589 -10.9873 23 6 6.6557 0.1452 -11.4626 24 7 7.1830 0.7586 -12.4984 25 14 7.2396 -1.5662 -10.9941 26 1 6.4163 -2.5806 -11.6998 27 1 8.6638 -1.7271 -11.3827 28 1 7.1029 -1.7514 -9.5270 29 6 2.0852 0.3469 -5.8094 30 1 -0.5400 0.9353 0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8500 -0.9354 -0.0004 33 1 3.5907 0.5104 1.2952 34 1 3.5542 2.2877 1.2056 35 1 1.4091 2.3064 2.4494 36 1 1.4456 0.5290 2.5390 37 1 2.6832 1.4879 3.3853 38 1 3.5906 0.5103 -1.2952 39 1 3.5542 2.2877 -1.2056 40 1 4.4711 0.5235 -3.9230 41 1 4.5235 2.0196 -2.9599 42 1 4.3552 2.1060 -4.7299 43 1 1.2101 3.1946 -6.2083 44 1 2.6001 3.5573 -5.1334 45 1 4.0938 2.1621 -6.4102 46 1 3.0744 2.8665 -7.7051 47 1 4.3279 -0.1863 -6.9947 48 1 3.0845 -0.8994 -8.0500 49 1 5.4176 -0.7588 -9.3920 50 1 7.8750 0.3226 -13.0197 51 1 2.8765 -0.2625 -5.3727 52 1 1.1860 -0.2539 -5.9450 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732169149.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:42 Heat of formation + Delta-G solvation = -36.141999 kcal Electronic energy + Delta-G solvation = -29836.597836 eV Core-core repulsion = 25837.098483 eV Total energy + Delta-G solvation = -3999.499353 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.62345 -39.20773 -37.91589 -36.81824 -35.10321 -33.97471 -32.01924 -31.92253 -31.58322 -30.33900 -28.79274 -27.25591 -26.46350 -24.96308 -23.93814 -22.00881 -21.25310 -21.00667 -19.85014 -19.47584 -19.04406 -18.31548 -17.39734 -16.56195 -16.08774 -15.93637 -15.31049 -15.20933 -15.09635 -14.79403 -14.61527 -14.34459 -14.22557 -13.80659 -13.43189 -13.34473 -13.16237 -12.96713 -12.72588 -12.59917 -12.43952 -12.34873 -12.24029 -12.06394 -11.94446 -11.68062 -11.62106 -11.50419 -11.34140 -11.22712 -11.12465 -10.97242 -10.77377 -10.71580 -10.62141 -10.01807 -9.92064 -9.59562 -9.30218 -8.84837 -8.53571 -8.23855 -8.01854 -6.35390 -3.87026 2.24501 2.49615 2.76833 2.98322 3.03690 3.11885 3.67283 4.04378 4.08000 4.23854 4.42833 4.48727 4.56322 4.67379 4.78931 4.87869 4.89443 4.93507 5.05703 5.11487 5.12306 5.14968 5.18269 5.21733 5.34264 5.38842 5.41938 5.49435 5.53541 5.56900 5.57817 5.63111 5.74503 5.75876 5.77297 5.85226 5.89956 5.91516 5.97972 6.01253 6.17682 6.37952 6.54267 6.59571 6.73827 7.10668 7.15266 7.21323 7.53625 8.03713 8.10098 8.54946 8.90544 9.37476 9.77482 10.77511 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021558 B = 0.002113 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.494665 B =13248.462181 C =13710.145517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.153 4.153 3 C -0.044 4.044 4 H 0.081 0.919 5 C -0.116 4.116 6 C -0.151 4.151 7 C -0.133 4.133 8 C 0.513 3.487 9 O -0.532 6.532 10 N -0.610 5.610 11 C 0.066 3.934 12 C 0.130 3.870 13 H 0.109 0.891 14 C -0.135 4.135 15 C 0.034 3.966 16 N -0.492 5.492 17 C 0.035 3.965 18 C 0.450 3.550 19 O -0.562 6.562 20 N -0.588 5.588 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.880 5.880 25 Si 0.880 3.120 26 H -0.270 1.270 27 H -0.276 1.276 28 H -0.270 1.270 29 C 0.026 3.974 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.052 0.948 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.055 0.945 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.072 0.928 45 H 0.038 0.962 46 H 0.121 0.879 47 H 0.048 0.952 48 H 0.091 0.909 49 H 0.370 0.630 50 H 0.274 0.726 51 H 0.047 0.953 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.432 -2.075 27.410 28.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C -0.063 4.063 4 H 0.099 0.901 5 C -0.154 4.154 6 C -0.208 4.208 7 C -0.173 4.173 8 C 0.301 3.699 9 O -0.408 6.408 10 N -0.344 5.344 11 C -0.077 4.077 12 C 0.026 3.974 13 H 0.127 0.873 14 C -0.174 4.174 15 C -0.093 4.093 16 N -0.217 5.217 17 C -0.097 4.097 18 C 0.236 3.764 19 O -0.444 6.444 20 N -0.227 5.227 21 C -0.434 4.434 22 H 0.138 0.862 23 C -0.161 4.161 24 N -0.519 5.519 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.196 1.196 29 C -0.104 4.104 30 H 0.114 0.886 31 H 0.108 0.892 32 H 0.118 0.882 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.073 0.927 41 H 0.091 0.909 42 H 0.100 0.900 43 H 0.103 0.897 44 H 0.091 0.909 45 H 0.056 0.944 46 H 0.139 0.861 47 H 0.066 0.934 48 H 0.109 0.891 49 H 0.203 0.797 50 H 0.084 0.916 51 H 0.066 0.934 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.596 -1.316 26.693 27.784 hybrid contribution 1.573 -1.719 0.592 2.404 sum -6.024 -3.035 27.285 28.106 Atomic orbital electron populations 1.23694 0.95909 1.01309 0.99042 1.22615 0.95993 0.97013 1.01468 1.20170 0.96563 0.97118 0.92473 0.90092 1.21542 0.97863 1.01958 0.94024 1.21756 0.99829 1.02153 0.97099 1.21758 0.98726 1.04153 0.92675 1.20688 0.89072 0.75765 0.84336 1.90694 1.14741 1.49203 1.86183 1.48003 1.06960 1.73449 1.05970 1.21968 0.79860 1.02110 1.03731 1.21946 0.96282 0.95117 0.84070 0.87314 1.22940 1.01076 0.96465 0.96874 1.23638 0.94627 0.91300 0.99735 1.64632 1.34657 1.02461 1.19935 1.22131 0.93868 0.97351 0.96369 1.19598 0.83022 0.87754 0.85987 1.90481 1.63019 1.20079 1.70835 1.42199 1.35277 1.17202 1.28034 1.19424 1.17476 1.03493 1.02977 0.86219 1.25042 0.96812 0.98303 0.95976 1.69620 1.27073 1.37889 1.17363 0.86676 0.79502 0.84593 0.78624 1.19552 1.20164 1.19587 1.23295 1.01120 0.96598 0.89350 0.88639 0.89239 0.88178 0.91841 0.91825 0.92796 0.92393 0.92904 0.88945 0.88826 0.92670 0.90897 0.90003 0.89679 0.90893 0.94380 0.86144 0.93438 0.89090 0.79700 0.91573 0.93436 0.89777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 13.22 29.01 0.38 -1.16 16 2 C -0.15 -1.33 6.76 -36.03 -0.24 -1.58 16 3 C -0.04 -0.34 1.82 -91.77 -0.17 -0.51 16 4 H 0.08 0.75 7.60 -51.93 -0.39 0.35 16 5 C -0.12 -0.69 5.39 -26.73 -0.14 -0.84 16 6 C -0.15 -0.91 9.73 37.16 0.36 -0.55 16 7 C -0.13 -0.99 3.72 -27.88 -0.10 -1.09 16 8 C 0.51 5.55 7.42 -10.98 -0.08 5.47 16 9 O -0.53 -7.38 13.53 5.56 0.08 -7.31 16 10 N -0.61 -6.35 2.72 -172.37 -0.47 -6.82 16 11 C 0.07 0.55 9.22 59.85 0.55 1.11 16 12 C 0.13 1.56 3.44 -66.57 -0.23 1.33 16 13 H 0.11 1.44 6.97 -51.93 -0.36 1.08 16 14 C -0.13 -1.69 6.14 -24.87 -0.15 -1.84 16 15 C 0.03 0.52 4.93 -1.90 -0.01 0.51 16 16 N -0.49 -7.78 5.26 -231.89 -1.22 -9.00 16 17 C 0.03 0.57 5.52 -4.98 -0.03 0.54 16 18 C 0.45 9.90 7.49 -10.99 -0.08 9.82 16 19 O -0.56 -14.30 13.09 5.55 0.07 -14.23 16 20 N -0.59 -13.65 5.09 -10.97 -0.06 -13.71 16 21 C -0.31 -8.44 10.16 -14.94 -0.15 -8.59 16 22 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 23 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 24 N -0.88 -25.30 13.96 55.50 0.77 -24.53 16 25 Si 0.88 19.01 27.74 -169.99 -4.71 14.30 16 26 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 27 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 28 H -0.27 -5.30 6.52 56.52 0.37 -4.93 16 29 C 0.03 0.33 6.21 -2.75 -0.02 0.31 16 30 H 0.10 0.97 7.83 -52.49 -0.41 0.55 16 31 H 0.09 0.77 8.06 -52.49 -0.42 0.35 16 32 H 0.10 0.81 8.06 -52.48 -0.42 0.38 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.38 7.38 -51.93 -0.38 -0.01 16 37 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.09 0.58 8.11 -51.93 -0.42 0.16 16 39 H 0.09 0.54 7.40 -51.93 -0.38 0.16 16 40 H 0.05 0.44 7.92 -51.93 -0.41 0.02 16 41 H 0.07 0.44 6.44 -51.93 -0.33 0.10 16 42 H 0.08 0.78 4.76 -51.93 -0.25 0.54 16 43 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.07 0.84 7.89 -51.93 -0.41 0.43 16 45 H 0.04 0.57 5.87 -51.93 -0.30 0.27 16 46 H 0.12 2.31 5.96 -51.93 -0.31 2.00 16 47 H 0.05 0.69 7.81 -51.93 -0.41 0.28 16 48 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 49 H 0.37 7.57 5.76 -40.82 -0.24 7.34 16 50 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 51 H 0.05 0.57 6.67 -51.93 -0.35 0.23 16 52 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 401.96 15.07 6.06 6.06 Total: -1.00 -32.37 401.96 -8.41 -40.78 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -8.72 Total: 10.49 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: -0.21 Total: 3.97 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: -0.97 Total: -54.06 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: 0.15 Total: -21.54 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -4.71 Total: 14.30 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.37 -8.41 -40.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732169149.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.636 kcal (2) G-P(sol) polarization free energy of solvation -32.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds