Wall clock time and date at job start Tue Mar 31 2020 20:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50704 * 119.99731 * 2 1 4 4 H 1.08995 * 109.46973 * 0.02562 * 3 2 1 5 5 C 1.53007 * 109.46786 * 240.00004 * 3 2 1 6 6 C 1.52998 * 109.46916 * 65.00081 * 5 3 2 7 7 C 1.53000 * 109.46803 * 120.00420 * 3 2 1 8 8 C 1.50703 * 109.46653 * 184.99780 * 7 3 2 9 9 O 1.21279 * 120.00049 * 359.97438 * 8 7 3 10 10 N 1.34779 * 119.99541 * 179.97438 * 8 7 3 11 11 C 1.46499 * 120.00212 * 359.97438 * 10 8 7 12 12 C 1.46502 * 119.99726 * 179.97438 * 10 8 7 13 13 H 1.09006 * 110.27361 * 2.09116 * 12 10 8 14 14 C 1.54602 * 110.30590 * 124.28319 * 12 10 8 15 15 C 1.54929 * 102.92101 * 96.96036 * 14 12 10 16 16 N 1.48541 * 103.22769 * 37.41123 * 15 14 12 17 17 C 1.46903 * 110.99925 * 200.28185 * 16 15 14 18 18 C 1.50709 * 109.46921 * 307.39410 * 17 16 15 19 19 O 1.21290 * 120.00126 * 0.02562 * 18 17 16 20 20 N 1.34770 * 119.99759 * 180.02562 * 18 17 16 21 21 C 1.37099 * 120.00278 * 180.02562 * 20 18 17 22 22 H 1.08003 * 119.99306 * 0.02562 * 21 20 18 23 23 C 1.38941 * 120.00541 * 179.97438 * 21 20 18 24 24 N 1.31415 * 120.00232 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00343 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46786 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.47144 * 119.99969 * 25 23 21 28 28 H 1.48493 * 109.47434 * 240.00183 * 25 23 21 29 29 C 1.47894 * 105.81922 * 320.79130 * 16 15 14 30 30 H 1.08005 * 120.00155 * 0.02562 * 1 2 3 31 31 H 1.08002 * 119.99965 * 180.02562 * 1 2 3 32 32 H 1.07995 * 119.99997 * 180.02562 * 2 1 3 33 33 H 1.09001 * 109.46825 * 185.00389 * 5 3 2 34 34 H 1.08996 * 109.46874 * 305.00282 * 5 3 2 35 35 H 1.08995 * 109.47205 * 299.99771 * 6 5 3 36 36 H 1.08996 * 109.47185 * 60.00391 * 6 5 3 37 37 H 1.09008 * 109.46748 * 179.97438 * 6 5 3 38 38 H 1.08996 * 109.47332 * 65.00019 * 7 3 2 39 39 H 1.08996 * 109.46646 * 304.99155 * 7 3 2 40 40 H 1.09002 * 109.47391 * 270.00122 * 11 10 8 41 41 H 1.09001 * 109.46813 * 150.00179 * 11 10 8 42 42 H 1.09004 * 109.47041 * 30.00306 * 11 10 8 43 43 H 1.09006 * 110.71949 * 215.31467 * 14 12 10 44 44 H 1.08995 * 110.72699 * 338.59749 * 14 12 10 45 45 H 1.09004 * 110.66838 * 278.98071 * 15 14 12 46 46 H 1.09000 * 110.81156 * 155.91595 * 15 14 12 47 47 H 1.08998 * 109.47561 * 67.38999 * 17 16 15 48 48 H 1.08998 * 109.47014 * 187.39751 * 17 16 15 49 49 H 0.97003 * 120.00195 * 0.02562 * 20 18 17 50 50 H 0.96994 * 120.00588 * 179.97438 * 24 23 21 51 51 H 1.09001 * 109.92310 * 265.98133 * 29 16 15 52 52 H 1.09001 * 110.08133 * 144.77495 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 1.3551 2.1336 0.0005 5 6 2.9431 1.3862 -1.2493 6 6 2.0563 1.4307 -2.4953 7 6 2.9431 1.3861 1.2492 8 6 3.6020 2.7400 1.3126 9 8 3.3893 3.5592 0.4440 10 7 4.4276 3.0404 2.3347 11 6 4.6840 2.0510 3.3843 12 6 5.0685 4.3564 2.3961 13 1 4.7401 4.9757 1.5614 14 6 4.7452 5.0484 3.7403 15 6 5.9905 4.7265 4.6040 16 7 7.1096 4.8086 3.6307 17 6 8.2892 4.0841 4.1224 18 6 8.6305 4.5630 5.5100 19 8 7.9571 5.4229 6.0376 20 7 9.6839 4.0359 6.1647 21 6 9.9942 4.4711 7.4272 22 1 9.3940 5.2362 7.8972 23 6 11.0799 3.9273 8.1024 24 7 11.8093 2.9953 7.5311 25 14 11.5031 4.5209 9.8223 26 1 10.5345 5.5674 10.2369 27 1 11.4345 3.3801 10.7705 28 1 12.8760 5.0866 9.8270 29 6 6.6009 4.2058 2.3796 30 1 -0.5401 0.9353 -0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 3.5540 2.2878 -1.2056 34 1 3.5905 0.5105 -1.2952 35 1 1.4455 0.5290 -2.5389 36 1 1.4089 2.3063 -2.4495 37 1 2.6830 1.4889 -3.3853 38 1 3.7085 0.6113 1.2055 39 1 2.3278 1.2396 2.1369 40 1 3.9504 2.1688 4.1818 41 1 5.6858 2.2002 3.7872 42 1 4.6068 1.0479 2.9647 43 1 4.6381 6.1246 3.6040 44 1 3.8461 4.6236 4.1864 45 1 5.9187 3.7231 5.0238 46 1 6.1142 5.4654 5.3957 47 1 8.0744 3.0158 4.1495 48 1 9.1324 4.2684 3.4568 49 1 10.2227 3.3484 5.7427 50 1 12.5675 2.6159 8.0022 51 1 6.8698 3.1502 2.3398 52 1 7.0160 4.7273 1.5171 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732169150.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:44 Heat of formation + Delta-G solvation = -66.000038 kcal Electronic energy + Delta-G solvation = -29726.288501 eV Core-core repulsion = 25725.494406 eV Total energy + Delta-G solvation = -4000.794094 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.60196 -40.50924 -39.20826 -37.57201 -36.24696 -35.73560 -33.37953 -32.75179 -32.62120 -31.12572 -29.73566 -28.43798 -27.48033 -26.15031 -25.31090 -22.84434 -22.50871 -21.80077 -21.07238 -20.51406 -19.96972 -19.80638 -18.33145 -17.75739 -17.32981 -16.73399 -16.63077 -16.35867 -16.23733 -15.77829 -15.67882 -15.57557 -15.35168 -14.93583 -14.66907 -14.35877 -14.13950 -13.98102 -13.67189 -13.62561 -13.48799 -13.42645 -13.27759 -13.14075 -12.92673 -12.80371 -12.66879 -12.43956 -12.37528 -12.20746 -12.10450 -12.03490 -12.00869 -11.86347 -11.61228 -11.49679 -11.45417 -10.63265 -10.20314 -10.17375 -10.00465 -9.72311 -9.29151 -8.46844 -5.95146 1.36298 1.42272 1.43127 1.55919 1.62255 1.95767 2.03617 2.28674 2.87025 3.20237 3.32695 3.46666 3.65599 3.78302 3.81766 4.06662 4.09992 4.12641 4.20175 4.26952 4.30080 4.36263 4.41118 4.44682 4.46385 4.49148 4.56801 4.61835 4.63651 4.71401 4.80489 4.86128 4.87567 4.97481 5.02911 5.05194 5.07028 5.12187 5.22272 5.26854 5.41565 5.43303 5.46908 5.49920 5.79779 5.85302 5.95413 5.96793 6.09859 6.38762 6.60425 7.13169 7.17537 7.55450 8.11214 8.70701 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.024384 B = 0.001968 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.011596 B =14225.727614 C =14495.509292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.146 4.146 3 C -0.043 4.043 4 H 0.060 0.940 5 C -0.120 4.120 6 C -0.145 4.145 7 C -0.126 4.126 8 C 0.511 3.489 9 O -0.574 6.574 10 N -0.607 5.607 11 C 0.068 3.932 12 C 0.136 3.864 13 H 0.098 0.902 14 C -0.122 4.122 15 C 0.042 3.958 16 N -0.511 5.511 17 C 0.049 3.951 18 C 0.440 3.560 19 O -0.612 6.612 20 N -0.572 5.572 21 C -0.330 4.330 22 H 0.080 0.920 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.992 3.008 26 H -0.273 1.273 27 H -0.271 1.271 28 H -0.273 1.273 29 C 0.031 3.969 30 H 0.089 0.911 31 H 0.110 0.890 32 H 0.124 0.876 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.042 0.958 37 H 0.053 0.947 38 H 0.117 0.883 39 H 0.111 0.889 40 H 0.068 0.932 41 H 0.061 0.939 42 H 0.102 0.898 43 H 0.079 0.921 44 H 0.084 0.916 45 H 0.039 0.961 46 H 0.079 0.921 47 H 0.071 0.929 48 H 0.106 0.894 49 H 0.396 0.604 50 H 0.277 0.723 51 H 0.062 0.938 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.189 -10.587 -15.096 25.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.164 4.164 3 C -0.062 4.062 4 H 0.079 0.921 5 C -0.158 4.158 6 C -0.203 4.203 7 C -0.166 4.166 8 C 0.302 3.698 9 O -0.453 6.453 10 N -0.340 5.340 11 C -0.074 4.074 12 C 0.031 3.969 13 H 0.117 0.883 14 C -0.161 4.161 15 C -0.085 4.085 16 N -0.236 5.236 17 C -0.082 4.082 18 C 0.228 3.772 19 O -0.499 6.499 20 N -0.209 5.209 21 C -0.459 4.459 22 H 0.098 0.902 23 C -0.213 4.213 24 N -0.561 5.561 25 Si 0.816 3.184 26 H -0.198 1.198 27 H -0.196 1.196 28 H -0.198 1.198 29 C -0.097 4.097 30 H 0.108 0.892 31 H 0.128 0.872 32 H 0.141 0.859 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.135 0.865 39 H 0.129 0.871 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.120 0.880 43 H 0.098 0.902 44 H 0.103 0.897 45 H 0.057 0.943 46 H 0.097 0.903 47 H 0.089 0.911 48 H 0.124 0.876 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.080 0.920 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -18.395 -9.165 -15.206 25.566 hybrid contribution 0.708 -0.630 0.919 1.320 sum -17.687 -9.795 -14.287 24.756 Atomic orbital electron populations 1.23991 0.96047 1.02226 1.00694 1.22909 0.95933 0.97649 0.99941 1.20103 0.96549 0.95900 0.93676 0.92127 1.21612 0.98112 1.02044 0.94019 1.21702 0.99680 1.01478 0.97392 1.21777 1.00565 0.93429 1.00801 1.21288 0.78064 0.90445 0.80044 1.90655 1.63334 1.51922 1.39422 1.48057 1.46068 1.14853 1.24994 1.22041 1.02030 0.92502 0.90823 1.21744 0.91522 0.84518 0.99113 0.88343 1.22806 0.97553 1.01354 0.94379 1.23331 0.89137 1.00495 0.95565 1.64596 1.04424 1.50769 1.03856 1.21981 0.96051 0.96840 0.93310 1.20658 0.82670 0.85110 0.88803 1.90445 1.53092 1.35783 1.70558 1.41916 1.26793 1.36860 1.15319 1.19682 1.12544 1.21156 0.92538 0.90228 1.26019 0.95498 0.96191 1.03586 1.69672 1.19016 1.27448 1.39967 0.84886 0.78120 0.78204 0.77228 1.19801 1.19584 1.19799 1.23287 0.94015 0.99037 0.93394 0.89237 0.87170 0.85852 0.92353 0.91414 0.92036 0.93905 0.92810 0.86506 0.87082 0.91341 0.92003 0.88001 0.90230 0.89712 0.94252 0.90288 0.91095 0.87582 0.77035 0.91328 0.91993 0.89282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.10 14.32 67.78 0.97 -1.13 16 2 C -0.15 -1.63 7.75 25.65 0.20 -1.43 16 3 C -0.04 -0.64 1.80 -11.54 -0.02 -0.66 16 4 H 0.06 1.16 7.60 -2.39 -0.02 1.14 16 5 C -0.12 -2.00 5.18 30.60 0.16 -1.84 16 6 C -0.15 -2.25 9.73 71.98 0.70 -1.55 16 7 C -0.13 -1.63 3.71 29.85 0.11 -1.52 16 8 C 0.51 10.45 7.35 87.66 0.64 11.09 16 9 O -0.57 -16.01 13.34 -3.02 -0.04 -16.05 16 10 N -0.61 -11.81 2.72 -817.64 -2.23 -14.04 16 11 C 0.07 1.00 8.77 127.77 1.12 2.12 16 12 C 0.14 3.21 3.44 45.87 0.16 3.37 16 13 H 0.10 2.60 6.97 -2.38 -0.02 2.58 16 14 C -0.12 -3.09 6.33 31.80 0.20 -2.89 16 15 C 0.04 1.35 4.83 86.65 0.42 1.77 16 16 N -0.51 -16.42 5.26 -887.56 -4.67 -21.09 16 17 C 0.05 1.68 5.52 85.56 0.47 2.15 16 18 C 0.44 20.35 7.49 87.66 0.66 21.01 16 19 O -0.61 -32.57 13.09 -3.06 -0.04 -32.61 16 20 N -0.57 -28.65 5.29 -306.99 -1.62 -30.27 16 21 C -0.33 -18.35 9.68 84.04 0.81 -17.54 16 22 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 23 C -0.01 -0.70 5.50 84.92 0.47 -0.23 16 24 N -0.92 -48.84 13.05 21.66 0.28 -48.55 16 25 Si 0.99 42.34 29.55 68.60 2.03 44.37 16 26 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 27 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 28 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 29 C 0.03 0.77 5.94 86.45 0.51 1.29 16 30 H 0.09 1.08 7.83 -2.91 -0.02 1.05 16 31 H 0.11 0.90 8.06 -2.91 -0.02 0.88 16 32 H 0.12 1.02 8.06 -2.91 -0.02 1.00 16 33 H 0.06 1.30 5.88 -2.39 -0.01 1.28 16 34 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.06 0.83 7.38 -2.39 -0.02 0.81 16 36 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 38 H 0.12 1.02 7.40 -2.39 -0.02 1.00 16 39 H 0.11 1.10 8.11 -2.39 -0.02 1.08 16 40 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.06 1.10 5.42 -2.39 -0.01 1.09 16 42 H 0.10 0.90 6.44 -2.38 -0.02 0.88 16 43 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 44 H 0.08 1.92 7.96 -2.39 -0.02 1.90 16 45 H 0.04 1.22 6.38 -2.38 -0.02 1.20 16 46 H 0.08 3.22 5.96 -2.39 -0.01 3.21 16 47 H 0.07 2.07 7.81 -2.39 -0.02 2.05 16 48 H 0.11 3.28 8.14 -2.39 -0.02 3.26 16 49 H 0.40 18.86 7.90 -92.71 -0.73 18.13 16 50 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 51 H 0.06 1.38 6.42 -2.39 -0.02 1.37 16 52 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -68.56 405.00 1.47 -67.09 By element: Atomic # 1 Polarization: 36.99 SS G_CDS: 0.18 Total: 37.17 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: 7.58 Total: 13.99 kcal Atomic # 7 Polarization: -105.72 SS G_CDS: -8.24 Total: -113.95 kcal Atomic # 8 Polarization: -48.58 SS G_CDS: -0.08 Total: -48.66 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -68.56 1.47 -67.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732169150.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.087 kcal (2) G-P(sol) polarization free energy of solvation -68.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds