Wall clock time and date at job start Tue Mar 31 2020 20:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50693 * 120.00344 * 2 1 4 4 H 1.09006 * 109.47377 * 0.02562 * 3 2 1 5 5 C 1.52995 * 109.47182 * 120.00150 * 3 2 1 6 6 C 1.53002 * 109.47371 * 295.00217 * 5 3 2 7 7 C 1.53002 * 109.47506 * 240.00182 * 3 2 1 8 8 C 1.50703 * 109.46900 * 64.99575 * 7 3 2 9 9 O 1.21281 * 120.00056 * 0.02562 * 8 7 3 10 10 N 1.34779 * 120.00036 * 179.97438 * 8 7 3 11 11 C 1.46500 * 119.99862 * 0.02562 * 10 8 7 12 12 C 1.46491 * 120.00184 * 179.97438 * 10 8 7 13 13 H 1.09001 * 110.90733 * 356.14362 * 12 10 8 14 14 C 1.55138 * 110.99739 * 232.27234 * 12 10 8 15 15 C 1.54320 * 103.02210 * 206.25674 * 14 12 10 16 16 N 1.47437 * 107.23257 * 22.28526 * 15 14 12 17 17 C 1.46901 * 111.00223 * 123.25511 * 16 15 14 18 18 C 1.50706 * 109.46724 * 69.15656 * 17 16 15 19 19 O 1.21289 * 120.00040 * 359.97438 * 18 17 16 20 20 N 1.34777 * 119.99623 * 179.97438 * 18 17 16 21 21 C 1.37101 * 119.99743 * 179.97438 * 20 18 17 22 22 H 1.07998 * 119.99717 * 0.02562 * 21 20 18 23 23 C 1.38953 * 119.99527 * 180.02562 * 21 20 18 24 24 N 1.31411 * 120.00393 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99394 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47525 * 59.99991 * 25 23 21 27 27 H 1.48500 * 109.46875 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47242 * 299.99863 * 25 23 21 29 29 C 1.47846 * 108.56923 * 0.98995 * 16 15 14 30 30 H 1.07997 * 120.00332 * 179.97438 * 1 2 3 31 31 H 1.07999 * 119.99579 * 359.97438 * 1 2 3 32 32 H 1.08006 * 119.99926 * 180.02562 * 2 1 3 33 33 H 1.09004 * 109.47518 * 55.00527 * 5 3 2 34 34 H 1.09006 * 109.47624 * 174.99849 * 5 3 2 35 35 H 1.08991 * 109.47079 * 59.99776 * 6 5 3 36 36 H 1.09001 * 109.47498 * 179.97438 * 6 5 3 37 37 H 1.09002 * 109.46499 * 300.00078 * 6 5 3 38 38 H 1.09000 * 109.47168 * 305.00406 * 7 3 2 39 39 H 1.08998 * 109.47557 * 184.99763 * 7 3 2 40 40 H 1.09010 * 109.47060 * 269.99441 * 11 10 8 41 41 H 1.08997 * 109.47550 * 29.98815 * 11 10 8 42 42 H 1.09004 * 109.47643 * 149.99620 * 11 10 8 43 43 H 1.09000 * 110.70480 * 87.87312 * 14 12 10 44 44 H 1.09005 * 110.70206 * 324.64349 * 14 12 10 45 45 H 1.08998 * 109.88703 * 262.87492 * 15 14 12 46 46 H 1.08998 * 110.02181 * 141.76373 * 15 14 12 47 47 H 1.08997 * 109.47210 * 189.15098 * 17 16 15 48 48 H 1.08999 * 109.47159 * 309.15807 * 17 16 15 49 49 H 0.97005 * 119.99987 * 0.02562 * 20 18 17 50 50 H 0.96998 * 119.99620 * 180.02562 * 24 23 21 51 51 H 1.08995 * 110.38030 * 94.73340 * 29 16 15 52 52 H 1.09000 * 110.37255 * 217.07995 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3553 2.1336 0.0005 5 6 2.9432 1.3860 1.2492 6 6 2.0566 1.4305 2.4953 7 6 2.9432 1.3861 -1.2493 8 6 2.0698 1.4300 -2.4766 9 8 0.8626 1.3999 -2.3632 10 7 2.6301 1.5037 -3.7002 11 6 4.0882 1.5407 -3.8371 12 6 1.7811 1.5458 -4.8932 13 1 0.7295 1.4413 -4.6262 14 6 2.2054 0.4593 -5.9161 15 6 1.7418 1.0506 -7.2640 16 7 1.6281 2.5096 -7.0849 17 6 2.4627 3.2263 -8.0584 18 6 1.8830 3.0555 -9.4390 19 8 0.8741 2.4009 -9.5964 20 7 2.4856 3.6303 -10.4987 21 6 1.9585 3.4745 -11.7547 22 1 1.0602 2.8916 -11.8948 23 6 2.5801 4.0667 -12.8473 24 7 3.6734 4.7755 -12.6768 25 14 1.8615 3.8550 -14.5585 26 1 0.4828 4.4059 -14.5881 27 1 2.7055 4.5789 -15.5428 28 1 1.8253 2.4115 -14.9051 29 6 2.0221 2.8461 -5.7001 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5399 0.9353 0.0004 32 1 1.8500 -0.9354 -0.0004 33 1 3.5907 0.5103 1.2951 34 1 3.5542 2.2876 1.2056 35 1 1.4457 0.5290 2.5390 36 1 2.6832 1.4878 3.3853 37 1 1.4091 2.3063 2.4494 38 1 3.5906 0.5104 -1.2953 39 1 3.5541 2.2877 -1.2056 40 1 4.4287 2.5761 -3.8189 41 1 4.5446 0.9937 -3.0121 42 1 4.3763 1.0800 -4.7820 43 1 1.6950 -0.4821 -5.7123 44 1 3.2868 0.3225 -5.9066 45 1 0.7726 0.6339 -7.5380 46 1 2.4738 0.8283 -8.0405 47 1 2.4892 4.2858 -7.8040 48 1 3.4747 2.8219 -8.0368 49 1 3.2926 4.1535 -10.3728 50 1 4.1070 5.1892 -13.4395 51 1 3.0747 3.1264 -5.6625 52 1 1.3995 3.6532 -5.3140 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732169151.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:47 Heat of formation + Delta-G solvation = -69.906447 kcal Electronic energy + Delta-G solvation = -29368.893604 eV Core-core repulsion = 25367.930115 eV Total energy + Delta-G solvation = -4000.963489 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.41739 -40.42842 -39.20697 -37.59085 -36.29125 -35.81528 -33.33296 -32.69097 -32.55938 -31.13365 -29.70264 -28.30899 -27.60579 -26.19302 -25.36638 -22.55704 -22.35456 -22.09656 -20.95691 -20.53012 -19.96424 -19.72834 -18.26066 -17.69986 -17.43466 -16.80015 -16.65826 -16.47515 -16.14850 -15.68823 -15.63809 -15.51182 -15.03304 -14.76463 -14.67731 -14.55817 -14.20680 -14.10211 -13.75260 -13.72726 -13.56651 -13.31759 -13.17602 -12.94141 -12.92231 -12.85529 -12.57246 -12.52018 -12.42729 -12.27263 -12.12321 -12.08799 -12.00838 -11.67424 -11.62190 -11.48788 -11.33373 -10.79369 -10.33209 -10.01753 -10.00061 -9.60729 -9.23280 -8.45902 -5.94398 1.39715 1.41539 1.52243 1.55309 1.72192 1.91947 2.06518 2.29673 2.86638 3.20664 3.34273 3.49240 3.68560 3.75748 3.86244 3.92573 4.01763 4.18897 4.21097 4.26624 4.35709 4.39283 4.41796 4.44503 4.48175 4.50995 4.55957 4.65248 4.67766 4.71641 4.79511 4.83659 4.95079 4.96817 5.03137 5.06355 5.09044 5.09842 5.18363 5.21615 5.41233 5.42089 5.49029 5.52332 5.85179 5.86341 6.00909 6.07551 6.10271 6.45615 6.61920 7.13912 7.26219 7.57312 8.13866 8.71208 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.035921 B = 0.001795 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.295521 B =15593.313694 C =15939.595284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.146 4.146 3 C -0.046 4.046 4 H 0.057 0.943 5 C -0.109 4.109 6 C -0.154 4.154 7 C -0.123 4.123 8 C 0.504 3.496 9 O -0.573 6.573 10 N -0.607 5.607 11 C 0.063 3.937 12 C 0.140 3.860 13 H 0.085 0.915 14 C -0.137 4.137 15 C 0.062 3.938 16 N -0.531 5.531 17 C 0.057 3.943 18 C 0.440 3.560 19 O -0.617 6.617 20 N -0.574 5.574 21 C -0.334 4.334 22 H 0.077 0.923 23 C -0.012 4.012 24 N -0.919 5.919 25 Si 0.992 3.008 26 H -0.274 1.274 27 H -0.269 1.269 28 H -0.272 1.272 29 C 0.043 3.957 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.114 0.886 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.048 0.952 36 H 0.063 0.937 37 H 0.044 0.956 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.071 0.929 41 H 0.102 0.898 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.096 0.904 45 H 0.054 0.946 46 H 0.045 0.955 47 H 0.107 0.893 48 H 0.076 0.924 49 H 0.396 0.604 50 H 0.278 0.722 51 H 0.074 0.926 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.623 -6.706 28.372 30.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.163 4.163 3 C -0.065 4.065 4 H 0.075 0.925 5 C -0.146 4.146 6 C -0.211 4.211 7 C -0.162 4.162 8 C 0.294 3.706 9 O -0.452 6.452 10 N -0.339 5.339 11 C -0.079 4.079 12 C 0.035 3.965 13 H 0.103 0.897 14 C -0.176 4.176 15 C -0.066 4.066 16 N -0.256 5.256 17 C -0.074 4.074 18 C 0.227 3.773 19 O -0.503 6.503 20 N -0.212 5.212 21 C -0.464 4.464 22 H 0.095 0.905 23 C -0.211 4.211 24 N -0.560 5.560 25 Si 0.815 3.185 26 H -0.199 1.199 27 H -0.194 1.194 28 H -0.197 1.197 29 C -0.086 4.086 30 H 0.110 0.890 31 H 0.097 0.903 32 H 0.132 0.868 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.064 0.936 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.090 0.910 41 H 0.120 0.880 42 H 0.096 0.904 43 H 0.098 0.902 44 H 0.114 0.886 45 H 0.072 0.928 46 H 0.064 0.936 47 H 0.125 0.875 48 H 0.094 0.906 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.092 0.908 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.950 -6.886 28.106 29.760 hybrid contribution 0.307 0.076 -1.268 1.307 sum 7.258 -6.810 26.839 28.624 Atomic orbital electron populations 1.23688 0.96724 1.00755 1.01088 1.22860 0.95698 0.98167 0.99622 1.20179 0.96636 0.95574 0.94090 0.92455 1.21508 0.97477 1.03276 0.92384 1.21775 0.99957 1.01369 0.97999 1.21799 0.98114 1.06565 0.89767 1.21468 0.89033 0.74764 0.85318 1.90716 1.16985 1.50801 1.86716 1.47856 1.08157 1.73114 1.04796 1.22146 0.77448 1.03530 1.04747 1.21847 0.95846 0.94146 0.84685 0.89668 1.23091 1.02797 0.98701 0.93051 1.22529 1.00434 0.87139 0.96543 1.63049 1.53419 1.06627 1.02470 1.21917 0.95058 1.01188 0.89264 1.20806 0.86127 0.83291 0.87091 1.90497 1.28075 1.45268 1.86466 1.41905 1.26411 1.46910 1.05941 1.19608 1.10468 1.31991 0.84291 0.90521 1.26000 0.96212 0.95672 1.03249 1.69659 1.19120 1.33681 1.33554 0.85011 0.78080 0.78534 0.76829 1.19949 1.19353 1.19746 1.23296 1.00656 0.97877 0.86726 0.88968 0.90333 0.86798 0.90430 0.90382 0.93304 0.91781 0.93639 0.86237 0.86190 0.91011 0.87951 0.90441 0.90178 0.88561 0.92796 0.93627 0.87461 0.90615 0.76973 0.91303 0.90830 0.90726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.75 13.22 67.78 0.90 -2.85 16 2 C -0.15 -2.39 6.76 25.65 0.17 -2.21 16 3 C -0.05 -0.62 1.81 -11.54 -0.02 -0.64 16 4 H 0.06 1.06 7.60 -2.38 -0.02 1.04 16 5 C -0.11 -0.93 5.39 30.59 0.16 -0.76 16 6 C -0.15 -1.60 9.73 71.98 0.70 -0.90 16 7 C -0.12 -1.29 3.72 29.85 0.11 -1.17 16 8 C 0.50 9.87 7.42 87.66 0.65 10.52 16 9 O -0.57 -16.55 13.55 -3.03 -0.04 -16.60 16 10 N -0.61 -10.52 2.91 -814.85 -2.37 -12.88 16 11 C 0.06 0.55 9.19 127.77 1.17 1.73 16 12 C 0.14 3.32 3.45 46.38 0.16 3.48 16 13 H 0.09 2.59 7.02 -2.39 -0.02 2.57 16 14 C -0.14 -3.13 6.48 31.78 0.21 -2.93 16 15 C 0.06 1.99 5.61 86.65 0.49 2.48 16 16 N -0.53 -17.84 4.87 -890.09 -4.33 -22.17 16 17 C 0.06 1.98 5.03 85.56 0.43 2.41 16 18 C 0.44 21.26 7.40 87.66 0.65 21.91 16 19 O -0.62 -35.04 15.08 -3.06 -0.05 -35.09 16 20 N -0.57 -29.63 5.29 -306.98 -1.62 -31.25 16 21 C -0.33 -19.15 9.68 84.04 0.81 -18.33 16 22 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 23 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 24 N -0.92 -49.46 13.05 21.66 0.28 -49.18 16 25 Si 0.99 43.22 29.55 68.60 2.03 45.25 16 26 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 27 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 28 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 29 C 0.04 1.07 6.29 86.78 0.55 1.62 16 30 H 0.09 1.72 8.06 -2.91 -0.02 1.69 16 31 H 0.08 1.82 7.83 -2.91 -0.02 1.80 16 32 H 0.11 1.53 8.06 -2.91 -0.02 1.51 16 33 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.08 0.48 8.14 -2.38 -0.02 0.46 16 35 H 0.05 0.59 7.38 -2.39 -0.02 0.57 16 36 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.12 0.66 7.40 -2.39 -0.02 0.65 16 39 H 0.12 0.69 8.11 -2.39 -0.02 0.67 16 40 H 0.07 0.50 8.09 -2.38 -0.02 0.48 16 41 H 0.10 0.33 6.44 -2.39 -0.02 0.32 16 42 H 0.08 0.70 5.93 -2.38 -0.01 0.68 16 43 H 0.08 1.79 8.14 -2.39 -0.02 1.78 16 44 H 0.10 1.72 5.94 -2.38 -0.01 1.70 16 45 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.05 1.56 7.30 -2.39 -0.02 1.54 16 47 H 0.11 3.31 8.08 -2.39 -0.02 3.29 16 48 H 0.08 2.23 7.98 -2.39 -0.02 2.21 16 49 H 0.40 19.25 7.90 -92.70 -0.73 18.52 16 50 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 51 H 0.07 1.47 6.95 -2.39 -0.02 1.46 16 52 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -75.56 410.83 1.67 -73.89 By element: Atomic # 1 Polarization: 33.67 SS G_CDS: 0.17 Total: 33.84 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: 7.61 Total: 14.20 kcal Atomic # 7 Polarization: -107.45 SS G_CDS: -8.04 Total: -115.49 kcal Atomic # 8 Polarization: -51.59 SS G_CDS: -0.09 Total: -51.68 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -75.56 1.67 -73.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732169151.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.981 kcal (2) G-P(sol) polarization free energy of solvation -75.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds