Wall clock time and date at job start Tue Mar 31 2020 20:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50703 * 120.00478 * 2 1 4 4 H 1.09000 * 109.46694 * 0.02562 * 3 2 1 5 5 C 1.52997 * 109.47358 * 239.99877 * 3 2 1 6 6 C 1.53002 * 109.46964 * 64.99760 * 5 3 2 7 7 C 1.52996 * 109.47086 * 119.99732 * 3 2 1 8 8 C 1.50702 * 109.47159 * 295.00006 * 7 3 2 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 7 3 10 10 N 1.34777 * 119.99928 * 179.72352 * 8 7 3 11 11 C 1.46506 * 120.00264 * 0.28128 * 10 8 7 12 12 C 1.46499 * 120.00199 * 180.27479 * 10 8 7 13 13 H 1.09006 * 110.27570 * 357.91545 * 12 10 8 14 14 C 1.54594 * 110.31178 * 235.71908 * 12 10 8 15 15 C 1.54939 * 102.92085 * 219.12465 * 14 12 10 16 16 N 1.48532 * 103.22804 * 37.41391 * 15 14 12 17 17 C 1.46896 * 111.00133 * 200.27774 * 16 15 14 18 18 C 1.50707 * 109.46979 * 307.39781 * 17 16 15 19 19 O 1.21293 * 119.99956 * 359.97438 * 18 17 16 20 20 N 1.34775 * 119.99603 * 180.02562 * 18 17 16 21 21 C 1.37100 * 119.99698 * 180.02562 * 20 18 17 22 22 H 1.07996 * 120.00163 * 359.97438 * 21 20 18 23 23 C 1.38945 * 120.00114 * 180.02562 * 21 20 18 24 24 N 1.31414 * 120.00489 * 180.02562 * 23 21 20 25 25 Si 1.86809 * 119.99977 * 359.97438 * 23 21 20 26 26 H 1.48502 * 109.46799 * 90.00585 * 25 23 21 27 27 H 1.48503 * 109.47319 * 210.00360 * 25 23 21 28 28 H 1.48498 * 109.47139 * 330.00577 * 25 23 21 29 29 C 1.47901 * 105.82046 * 320.79524 * 16 15 14 30 30 H 1.07995 * 120.00006 * 179.97438 * 1 2 3 31 31 H 1.08003 * 119.99110 * 0.02562 * 1 2 3 32 32 H 1.07998 * 119.99830 * 179.97438 * 2 1 3 33 33 H 1.08997 * 109.47529 * 184.99609 * 5 3 2 34 34 H 1.09004 * 109.46867 * 304.99925 * 5 3 2 35 35 H 1.09005 * 109.47088 * 299.99657 * 6 5 3 36 36 H 1.08996 * 109.47299 * 60.00057 * 6 5 3 37 37 H 1.09004 * 109.47061 * 180.02562 * 6 5 3 38 38 H 1.09004 * 109.47066 * 175.00209 * 7 3 2 39 39 H 1.08994 * 109.47405 * 55.00039 * 7 3 2 40 40 H 1.08998 * 109.46921 * 89.99095 * 11 10 8 41 41 H 1.08994 * 109.46996 * 209.99677 * 11 10 8 42 42 H 1.09001 * 109.46578 * 329.99540 * 11 10 8 43 43 H 1.08996 * 110.72460 * 337.48780 * 14 12 10 44 44 H 1.09000 * 110.72315 * 100.77122 * 14 12 10 45 45 H 1.09000 * 110.67061 * 278.97912 * 15 14 12 46 46 H 1.09006 * 110.80792 * 155.91826 * 15 14 12 47 47 H 1.08998 * 109.47367 * 67.39651 * 17 16 15 48 48 H 1.09004 * 109.47034 * 187.39739 * 17 16 15 49 49 H 0.96998 * 120.00610 * 359.97438 * 20 18 17 50 50 H 0.97002 * 120.00313 * 179.97438 * 24 23 21 51 51 H 1.09001 * 109.91270 * 265.97407 * 29 16 15 52 52 H 1.08994 * 109.91936 * 144.68437 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3553 2.1336 0.0005 5 6 2.9433 1.3861 -1.2492 6 6 2.0566 1.4307 -2.4953 7 6 2.9432 1.3861 1.2492 8 6 2.0698 1.4300 2.4766 9 8 0.8627 1.3991 2.3633 10 7 2.6302 1.4976 3.7004 11 6 4.0884 1.5345 3.8374 12 6 1.7813 1.5343 4.8938 13 1 0.7291 1.5365 4.6090 14 6 2.1107 2.7796 5.7486 15 6 2.0210 2.2388 7.1977 16 7 2.5881 0.8705 7.0856 17 6 2.1636 0.0306 8.2135 18 6 2.4772 0.7336 9.5092 19 8 3.0031 1.8265 9.4944 20 7 2.1743 0.1473 10.6843 21 6 2.4591 0.7870 11.8630 22 1 2.9266 1.7605 11.8499 23 6 2.1473 0.1825 13.0746 24 7 2.4198 0.7958 14.2044 25 14 1.3394 -1.5017 13.0974 26 1 2.3877 -2.5532 13.1265 27 1 0.4827 -1.6234 14.3043 28 1 0.5057 -1.6673 11.8798 29 6 2.0861 0.3298 5.8037 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5399 0.9354 -0.0004 32 1 1.8500 -0.9353 0.0004 33 1 3.5542 2.2877 -1.2056 34 1 3.5907 0.5103 -1.2950 35 1 1.4457 0.5289 -2.5390 36 1 1.4092 2.3063 -2.4494 37 1 2.6833 1.4879 -3.3853 38 1 3.5542 2.2877 1.2056 39 1 3.5906 0.5104 1.2952 40 1 4.4284 2.5700 3.8244 41 1 4.3766 1.0691 4.7799 42 1 4.5448 0.9918 3.0096 43 1 3.1164 3.1404 5.5330 44 1 1.3741 3.5661 5.5842 45 1 0.9837 2.1992 7.5301 46 1 2.6180 2.8483 7.8762 47 1 1.0906 -0.1498 8.1486 48 1 2.6948 -0.9205 8.1783 49 1 1.7541 -0.7268 10.6962 50 1 2.2018 0.3739 15.0502 51 1 1.1766 -0.2461 5.9745 52 1 2.8469 -0.3003 5.3432 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732169152.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:50 Heat of formation + Delta-G solvation = -39.079470 kcal Electronic energy + Delta-G solvation = -29548.325386 eV Core-core repulsion = 25548.698655 eV Total energy + Delta-G solvation = -3999.626731 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.51947 -39.18295 -37.87204 -36.82039 -35.20566 -33.96517 -32.01468 -31.90040 -31.56061 -30.36392 -28.52726 -27.26241 -26.50979 -24.93461 -23.92594 -21.99065 -21.18523 -21.02941 -19.84762 -19.43696 -19.01652 -18.30681 -17.35294 -16.50726 -16.03831 -15.89521 -15.49384 -15.13812 -15.01892 -14.77211 -14.60545 -14.33646 -14.07771 -13.70235 -13.56012 -13.36045 -13.12006 -12.93340 -12.62984 -12.57493 -12.42062 -12.35840 -12.22375 -12.00392 -11.86065 -11.71526 -11.61649 -11.49609 -11.48535 -11.17235 -11.10945 -11.06066 -10.77003 -10.63268 -10.55669 -10.00338 -9.93450 -9.57987 -9.30169 -8.80159 -8.48723 -8.22621 -8.05515 -6.33955 -3.85505 2.24943 2.51931 2.82010 3.00832 3.05232 3.13541 3.69306 4.03565 4.08594 4.26381 4.43651 4.50147 4.56202 4.74053 4.84726 4.88846 4.91166 4.96166 5.06536 5.11169 5.15790 5.18502 5.23161 5.33878 5.37861 5.39886 5.40179 5.52707 5.57656 5.61331 5.63024 5.63377 5.75074 5.75694 5.77757 5.85433 5.90213 5.91794 5.96424 5.99407 6.21443 6.44272 6.54793 6.58812 6.74358 7.09342 7.13561 7.28205 7.55086 8.06248 8.11610 8.56505 8.92008 9.39141 9.79111 10.78936 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.029919 B = 0.001926 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.650003 B =14536.817227 C =14994.042024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.153 4.153 3 C -0.045 4.045 4 H 0.080 0.920 5 C -0.116 4.116 6 C -0.151 4.151 7 C -0.132 4.132 8 C 0.511 3.489 9 O -0.535 6.535 10 N -0.607 5.607 11 C 0.073 3.927 12 C 0.131 3.869 13 H 0.104 0.896 14 C -0.134 4.134 15 C 0.038 3.962 16 N -0.493 5.493 17 C 0.033 3.967 18 C 0.451 3.549 19 O -0.563 6.563 20 N -0.588 5.588 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.880 5.880 25 Si 0.879 3.121 26 H -0.270 1.270 27 H -0.276 1.276 28 H -0.270 1.270 29 C 0.024 3.976 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.056 0.944 41 H 0.086 0.914 42 H 0.068 0.932 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.038 0.962 46 H 0.122 0.878 47 H 0.050 0.950 48 H 0.091 0.909 49 H 0.371 0.629 50 H 0.274 0.726 51 H 0.049 0.951 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.456 -2.312 -29.764 29.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C -0.064 4.064 4 H 0.099 0.901 5 C -0.154 4.154 6 C -0.209 4.209 7 C -0.172 4.172 8 C 0.300 3.700 9 O -0.412 6.412 10 N -0.341 5.341 11 C -0.070 4.070 12 C 0.027 3.973 13 H 0.122 0.878 14 C -0.173 4.173 15 C -0.090 4.090 16 N -0.218 5.218 17 C -0.099 4.099 18 C 0.237 3.763 19 O -0.445 6.445 20 N -0.227 5.227 21 C -0.434 4.434 22 H 0.138 0.862 23 C -0.161 4.161 24 N -0.520 5.520 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.195 1.195 29 C -0.105 4.105 30 H 0.107 0.893 31 H 0.113 0.887 32 H 0.118 0.882 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.075 0.925 41 H 0.104 0.896 42 H 0.087 0.913 43 H 0.098 0.902 44 H 0.090 0.910 45 H 0.057 0.943 46 H 0.140 0.860 47 H 0.068 0.932 48 H 0.109 0.891 49 H 0.203 0.797 50 H 0.084 0.916 51 H 0.067 0.933 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.739 -1.585 -29.564 29.616 hybrid contribution -1.463 -1.608 0.456 2.221 sum -0.724 -3.193 -29.108 29.292 Atomic orbital electron populations 1.23695 0.95935 1.01291 0.99080 1.22616 0.95980 0.97024 1.01435 1.20171 0.96580 0.97091 0.92522 0.90128 1.21539 0.97853 1.01953 0.94009 1.21760 0.99834 1.02151 0.97111 1.21748 0.98689 1.04181 0.92605 1.20708 0.89064 0.75813 0.84429 1.90694 1.14825 1.49401 1.86246 1.47935 1.07216 1.73259 1.05643 1.21827 0.79336 1.02017 1.03794 1.21963 0.95923 0.95126 0.84258 0.87821 1.22933 1.02563 0.96638 0.95167 1.23494 0.98835 0.90670 0.95975 1.64630 1.54889 1.02433 0.99836 1.22142 0.98929 0.97585 0.91217 1.19595 0.84859 0.87651 0.84182 1.90474 1.46427 1.21203 1.86415 1.42199 1.55619 1.18818 1.06074 1.19425 1.38201 1.04788 0.80981 0.86220 1.25038 0.97745 0.98276 0.95026 1.69619 1.46753 1.38209 0.97398 0.86681 0.79960 0.84402 0.78401 1.19561 1.20152 1.19544 1.23298 0.99295 0.96741 0.91211 0.89261 0.88662 0.88164 0.91811 0.91838 0.92404 0.92809 0.92912 0.88835 0.88873 0.92506 0.89551 0.91289 0.90244 0.90983 0.94340 0.86016 0.93165 0.89106 0.79671 0.91580 0.93308 0.90016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 13.22 29.01 0.38 -1.17 16 2 C -0.15 -1.32 6.76 -36.03 -0.24 -1.57 16 3 C -0.04 -0.34 1.82 -91.77 -0.17 -0.51 16 4 H 0.08 0.75 7.60 -51.93 -0.39 0.35 16 5 C -0.12 -0.67 5.39 -26.73 -0.14 -0.82 16 6 C -0.15 -0.89 9.73 37.16 0.36 -0.53 16 7 C -0.13 -0.96 3.72 -27.88 -0.10 -1.06 16 8 C 0.51 5.51 7.42 -10.98 -0.08 5.43 16 9 O -0.54 -7.50 13.52 5.55 0.08 -7.43 16 10 N -0.61 -6.27 2.77 -172.38 -0.48 -6.75 16 11 C 0.07 0.58 8.84 59.85 0.53 1.11 16 12 C 0.13 1.59 3.39 -66.57 -0.23 1.37 16 13 H 0.10 1.40 6.97 -51.93 -0.36 1.04 16 14 C -0.13 -1.70 6.65 -24.87 -0.17 -1.87 16 15 C 0.04 0.60 5.31 -1.90 -0.01 0.59 16 16 N -0.49 -7.71 5.26 -231.89 -1.22 -8.93 16 17 C 0.03 0.55 5.52 -4.97 -0.03 0.53 16 18 C 0.45 10.02 7.49 -10.98 -0.08 9.94 16 19 O -0.56 -14.37 13.09 5.55 0.07 -14.30 16 20 N -0.59 -13.84 5.09 -10.96 -0.06 -13.89 16 21 C -0.31 -8.52 10.16 -14.93 -0.15 -8.68 16 22 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 23 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 24 N -0.88 -25.50 13.96 55.50 0.77 -24.72 16 25 Si 0.88 19.26 27.74 -169.99 -4.71 14.54 16 26 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 27 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 28 H -0.27 -5.41 6.52 56.52 0.37 -5.04 16 29 C 0.02 0.30 5.86 -2.75 -0.02 0.28 16 30 H 0.09 0.77 8.06 -52.49 -0.42 0.35 16 31 H 0.10 0.98 7.83 -52.48 -0.41 0.56 16 32 H 0.10 0.79 8.06 -52.49 -0.42 0.37 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.37 7.38 -51.93 -0.38 -0.01 16 36 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 38 H 0.09 0.53 8.11 -51.93 -0.42 0.11 16 39 H 0.09 0.54 7.40 -51.93 -0.38 0.16 16 40 H 0.06 0.41 7.87 -51.93 -0.41 0.00 16 41 H 0.09 0.80 6.97 -51.93 -0.36 0.43 16 42 H 0.07 0.38 6.43 -51.93 -0.33 0.05 16 43 H 0.08 0.97 6.84 -51.93 -0.36 0.62 16 44 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 45 H 0.04 0.63 8.02 -51.93 -0.42 0.22 16 46 H 0.12 2.35 5.96 -51.93 -0.31 2.04 16 47 H 0.05 0.76 7.81 -51.93 -0.41 0.36 16 48 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 49 H 0.37 7.70 5.76 -40.82 -0.24 7.47 16 50 H 0.27 7.32 8.31 -40.82 -0.34 6.99 16 51 H 0.05 0.61 7.57 -51.93 -0.39 0.22 16 52 H 0.08 0.97 7.11 -51.93 -0.37 0.60 16 LS Contribution 405.22 15.07 6.11 6.11 Total: -1.00 -32.55 405.22 -8.56 -41.12 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -8.88 Total: 10.15 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: -0.24 Total: 4.10 kcal Atomic # 7 Polarization: -53.31 SS G_CDS: -0.98 Total: -54.29 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: 0.15 Total: -21.73 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -4.71 Total: 14.54 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.55 -8.56 -41.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732169152.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.036 kcal (2) G-P(sol) polarization free energy of solvation -32.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds