Wall clock time and date at job start Tue Mar 31 2020 20:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46960 * 2 1 4 4 H 1.08997 * 109.46858 * 303.66324 * 3 2 1 5 5 N 1.46494 * 109.47408 * 63.67026 * 3 2 1 6 6 C 1.34787 * 119.99528 * 274.99911 * 5 3 2 7 7 C 1.50701 * 119.99768 * 180.02562 * 6 5 3 8 8 O 1.21279 * 120.00149 * 0.02562 * 6 5 3 9 9 C 1.50706 * 109.47125 * 183.67040 * 3 2 1 10 10 O 1.21273 * 119.99894 * 264.89022 * 9 3 2 11 11 N 1.34777 * 120.00069 * 84.60917 * 9 3 2 12 12 C 1.47081 * 125.62880 * 175.54317 * 11 9 3 13 13 C 1.54456 * 107.29998 * 180.98434 * 12 11 9 14 14 C 1.54360 * 102.87024 * 21.47878 * 13 12 11 15 15 C 1.47579 * 125.62666 * 355.23773 * 11 9 3 16 16 C 1.52070 * 110.59116 * 207.24348 * 14 13 12 17 17 C 1.53177 * 109.73996 * 177.70151 * 16 14 13 18 18 C 1.53192 * 109.27749 * 59.92321 * 17 16 14 19 19 N 1.46951 * 108.89643 * 304.60931 * 18 17 16 20 20 C 1.36932 * 120.71756 * 234.30955 * 19 18 17 21 21 H 1.08005 * 119.99877 * 151.51090 * 20 19 18 22 22 C 1.38807 * 120.00635 * 331.51919 * 20 19 18 23 23 N 1.31617 * 120.00947 * 158.51701 * 22 20 19 24 24 Si 1.86807 * 119.99767 * 338.51742 * 22 20 19 25 25 H 1.48504 * 109.47006 * 94.31643 * 24 22 20 26 26 H 1.48496 * 109.47610 * 214.31800 * 24 22 20 27 27 H 1.48500 * 109.46908 * 334.31853 * 24 22 20 28 28 C 1.47099 * 118.56155 * 54.33932 * 19 18 17 29 29 H 1.08999 * 109.47334 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47504 * 300.00656 * 1 2 3 31 31 H 1.08999 * 109.47411 * 60.00315 * 1 2 3 32 32 H 1.08998 * 109.47077 * 239.99886 * 2 1 3 33 33 H 1.08997 * 109.46909 * 119.99539 * 2 1 3 34 34 H 0.96995 * 120.00695 * 95.00353 * 5 3 2 35 35 H 1.09003 * 109.47007 * 59.99689 * 7 6 5 36 36 H 1.08994 * 109.47080 * 180.02562 * 7 6 5 37 37 H 1.09003 * 109.47046 * 299.99931 * 7 6 5 38 38 H 1.09005 * 109.87445 * 300.41361 * 12 11 9 39 39 H 1.09005 * 109.87761 * 61.40940 * 12 11 9 40 40 H 1.09002 * 110.73426 * 139.82118 * 13 12 11 41 41 H 1.09000 * 110.73649 * 263.13356 * 13 12 11 42 42 H 1.09004 * 110.38066 * 275.53755 * 15 11 9 43 43 H 1.08998 * 110.37591 * 37.88937 * 15 11 9 44 44 H 1.09000 * 109.41971 * 297.78366 * 16 14 13 45 45 H 1.09000 * 109.42724 * 57.67118 * 16 14 13 46 46 H 1.08997 * 109.50743 * 179.86301 * 17 16 14 47 47 H 1.09008 * 109.50370 * 299.98517 * 17 16 14 48 48 H 1.08995 * 109.56745 * 64.43236 * 18 17 16 49 49 H 1.09000 * 109.56557 * 184.78928 * 18 17 16 50 50 H 0.96996 * 120.00421 * 179.97438 * 23 22 20 51 51 H 1.09002 * 109.56503 * 187.94796 * 28 19 18 52 52 H 1.08995 * 109.57096 * 67.59501 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6240 1.9749 -0.8553 5 7 1.6252 2.1072 1.2379 6 6 0.4056 2.6749 1.3218 7 6 -0.0209 3.3591 2.5950 8 8 -0.3485 2.6351 0.3728 9 6 3.5443 1.4436 -0.0910 10 8 4.2127 1.5152 0.9184 11 7 4.1467 1.3592 -1.2936 12 6 5.5954 1.4422 -1.5339 13 6 5.8160 1.3200 -3.0578 14 6 4.4432 1.7229 -3.6373 15 6 3.4622 1.1619 -2.5861 16 6 4.2182 1.0619 -4.9882 17 6 2.8287 1.4286 -5.5185 18 6 2.7306 2.9497 -5.6709 19 7 3.0535 3.5788 -4.3827 20 6 2.1864 4.4638 -3.7996 21 1 2.1644 4.5699 -2.7250 22 6 1.3355 5.2246 -4.5896 23 7 0.2421 5.7417 -4.0705 24 14 1.7422 5.5145 -6.3896 25 1 1.0531 4.4966 -7.2229 26 1 1.2870 6.8707 -6.7879 27 1 3.2097 5.4065 -6.5891 28 6 4.3286 3.2378 -3.7334 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.2281 2.1388 1.9970 35 1 0.6658 4.1763 2.8159 36 1 -1.0297 3.7541 2.4749 37 1 -0.0075 2.6414 3.4153 38 1 5.9754 2.4006 -1.1800 39 1 6.1041 0.6283 -1.0171 40 1 6.5927 2.0081 -3.3916 41 1 6.0641 0.2944 -3.3308 42 1 3.2798 0.1016 -2.7610 43 1 2.5249 1.7178 -2.6078 44 1 4.9769 1.4062 -5.6910 45 1 4.2897 -0.0202 -4.8788 46 1 2.6723 0.9550 -6.4877 47 1 2.0688 1.0834 -4.8173 48 1 3.4373 3.2869 -6.4291 49 1 1.7176 3.2224 -5.9665 50 1 -0.3522 6.2736 -4.6224 51 1 4.3561 3.6701 -2.7332 52 1 5.1559 3.6295 -4.3252 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733289963.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:01 Heat of formation + Delta-G solvation = -74.764007 kcal Electronic energy + Delta-G solvation = -32335.101786 eV Core-core repulsion = 28333.927657 eV Total energy + Delta-G solvation = -4001.174129 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.93320 -40.87275 -39.73632 -37.51096 -36.42944 -34.87695 -33.76437 -33.00945 -32.50461 -30.79073 -30.40456 -28.06664 -27.57546 -26.85462 -24.51648 -23.69574 -23.03789 -22.32539 -21.50906 -20.61655 -19.80260 -18.71834 -18.58835 -17.80803 -17.32068 -17.21215 -16.98119 -16.66498 -16.09085 -15.84989 -15.47652 -15.20124 -15.08484 -15.02717 -14.66108 -14.53871 -14.37454 -14.08514 -13.96099 -13.78293 -13.53973 -13.38270 -13.31776 -13.18427 -13.03002 -12.94141 -12.79647 -12.61086 -12.52895 -12.45733 -12.05992 -11.97567 -11.79094 -11.69208 -11.51233 -11.24413 -11.10941 -10.97241 -10.93686 -10.63883 -10.17837 -9.71736 -8.89115 -8.15505 -5.47947 1.28849 1.29298 1.39624 1.49396 1.63200 1.75413 2.35496 2.41206 3.04851 3.20524 3.31661 3.55421 3.76193 3.80775 3.83995 3.92283 3.96353 4.18789 4.26227 4.28407 4.30585 4.34694 4.42651 4.45998 4.51823 4.62527 4.65248 4.71913 4.76556 4.78676 4.82363 4.89783 4.91138 4.95883 4.98206 5.03510 5.06595 5.12157 5.17007 5.18761 5.25473 5.31830 5.34392 5.39410 5.41953 5.56029 5.86736 6.12136 6.32776 6.49654 6.89700 6.93704 7.24146 7.63999 8.03386 9.04500 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009740 B = 0.005218 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2874.149655 B = 5364.396666 C = 7069.253601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.113 4.113 3 C 0.130 3.870 4 H 0.076 0.924 5 N -0.710 5.710 6 C 0.499 3.501 7 C -0.162 4.162 8 O -0.580 6.580 9 C 0.530 3.470 10 O -0.568 6.568 11 N -0.607 5.607 12 C 0.104 3.896 13 C -0.105 4.105 14 C -0.081 4.081 15 C 0.114 3.886 16 C -0.086 4.086 17 C -0.132 4.132 18 C 0.118 3.882 19 N -0.614 5.614 20 C -0.239 4.239 21 H 0.032 0.968 22 C -0.036 4.036 23 N -0.957 5.957 24 Si 0.951 3.049 25 H -0.274 1.274 26 H -0.315 1.315 27 H -0.257 1.257 28 C 0.163 3.837 29 H 0.073 0.927 30 H 0.046 0.954 31 H 0.034 0.966 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.416 0.584 35 H 0.103 0.897 36 H 0.089 0.911 37 H 0.120 0.880 38 H 0.053 0.947 39 H 0.082 0.918 40 H 0.098 0.902 41 H 0.110 0.890 42 H 0.094 0.906 43 H 0.053 0.947 44 H 0.079 0.921 45 H 0.094 0.906 46 H 0.084 0.916 47 H 0.051 0.949 48 H 0.035 0.965 49 H 0.040 0.960 50 H 0.259 0.741 51 H 0.033 0.967 52 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.964 -15.725 5.968 19.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.152 4.152 3 C 0.021 3.979 4 H 0.094 0.906 5 N -0.366 5.366 6 C 0.289 3.711 7 C -0.222 4.222 8 O -0.459 6.459 9 C 0.318 3.682 10 O -0.449 6.449 11 N -0.339 5.339 12 C -0.017 4.017 13 C -0.143 4.143 14 C -0.083 4.083 15 C -0.009 4.009 16 C -0.123 4.123 17 C -0.171 4.171 18 C -0.006 4.006 19 N -0.338 5.338 20 C -0.369 4.369 21 H 0.050 0.950 22 C -0.231 4.231 23 N -0.603 5.603 24 Si 0.780 3.220 25 H -0.201 1.201 26 H -0.244 1.244 27 H -0.181 1.181 28 C 0.038 3.962 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.254 0.746 35 H 0.121 0.879 36 H 0.108 0.892 37 H 0.139 0.861 38 H 0.072 0.928 39 H 0.100 0.900 40 H 0.116 0.884 41 H 0.129 0.871 42 H 0.112 0.888 43 H 0.072 0.928 44 H 0.097 0.903 45 H 0.112 0.888 46 H 0.103 0.897 47 H 0.070 0.930 48 H 0.053 0.947 49 H 0.058 0.942 50 H 0.068 0.932 51 H 0.052 0.948 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 9.643 -15.599 5.885 19.260 hybrid contribution -0.395 1.303 -0.359 1.408 sum 9.248 -14.296 5.526 17.901 Atomic orbital electron populations 1.21692 0.94392 1.01539 1.01569 1.21763 0.97145 0.92413 1.03843 1.20757 0.90548 0.96759 0.89791 0.90639 1.45798 1.17535 1.57480 1.15743 1.21680 0.80714 0.77491 0.91252 1.21918 1.04222 1.02399 0.93614 1.90800 1.53824 1.60048 1.41259 1.20239 0.89839 0.75805 0.82346 1.90623 1.66665 1.52384 1.35201 1.48530 1.09142 1.70000 1.06241 1.22146 0.79659 1.01777 0.98138 1.22650 0.95941 1.04539 0.91162 1.21554 0.95262 0.95862 0.95667 1.22484 0.96244 1.00977 0.81161 1.21234 0.96307 1.00845 0.93933 1.21997 0.98425 0.94943 1.01751 1.21416 0.97985 0.94104 0.87123 1.44408 1.18263 1.48707 1.22448 1.18590 1.13067 1.14824 0.90430 0.95004 1.25964 0.96590 0.98240 1.02314 1.70038 1.12613 1.39238 1.38450 0.85814 0.79163 0.75567 0.81463 1.20078 1.24440 1.18095 1.20836 0.86683 0.93059 0.95617 0.90782 0.93447 0.94641 0.89655 0.89818 0.74627 0.87860 0.89175 0.86147 0.92825 0.89978 0.88398 0.87145 0.88791 0.92814 0.90261 0.88754 0.89720 0.92998 0.94702 0.94200 0.93193 0.94828 0.94314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.80 8.49 71.98 0.61 -3.19 16 2 C -0.11 -2.93 5.60 30.60 0.17 -2.76 16 3 C 0.13 4.21 2.12 44.25 0.09 4.30 16 4 H 0.08 3.13 6.23 -2.39 -0.01 3.12 16 5 N -0.71 -21.02 4.99 -446.08 -2.23 -23.25 16 6 C 0.50 15.95 6.45 87.66 0.57 16.51 16 7 C -0.16 -3.35 10.32 71.24 0.74 -2.61 16 8 O -0.58 -24.85 14.22 -3.02 -0.04 -24.90 16 9 C 0.53 17.04 7.06 87.66 0.62 17.66 16 10 O -0.57 -19.83 16.33 -3.01 -0.05 -19.88 16 11 N -0.61 -17.48 3.26 -812.10 -2.65 -20.13 16 12 C 0.10 2.43 6.60 86.76 0.57 3.00 16 13 C -0.10 -1.88 5.89 31.55 0.19 -1.70 16 14 C -0.08 -2.09 0.54 -51.83 -0.03 -2.11 16 15 C 0.11 3.21 4.50 86.63 0.39 3.60 16 16 C -0.09 -1.84 4.64 30.35 0.14 -1.70 16 17 C -0.13 -3.82 5.93 30.72 0.18 -3.63 16 18 C 0.12 4.71 4.20 86.36 0.36 5.07 16 19 N -0.61 -27.91 2.40 -700.45 -1.68 -29.59 16 20 C -0.24 -13.86 10.03 84.03 0.84 -13.02 16 21 H 0.03 2.12 8.06 -2.91 -0.02 2.10 16 22 C -0.04 -2.19 5.21 84.86 0.44 -1.75 16 23 N -0.96 -62.90 13.97 21.65 0.30 -62.59 16 24 Si 0.95 47.36 24.42 68.60 1.67 49.03 16 25 H -0.27 -12.85 6.69 99.48 0.67 -12.18 16 26 H -0.32 -16.13 7.11 99.48 0.71 -15.43 16 27 H -0.26 -11.99 6.68 99.48 0.66 -11.33 16 28 C 0.16 5.91 5.10 86.01 0.44 6.34 16 29 H 0.07 1.66 8.14 -2.39 -0.02 1.65 16 30 H 0.05 1.41 5.68 -2.38 -0.01 1.40 16 31 H 0.03 1.22 7.77 -2.39 -0.02 1.20 16 32 H 0.08 1.98 7.94 -2.39 -0.02 1.96 16 33 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.42 10.54 7.78 -92.71 -0.72 9.82 16 35 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.09 1.95 8.12 -2.39 -0.02 1.93 16 37 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 39 H 0.08 1.66 8.14 -2.38 -0.02 1.65 16 40 H 0.10 1.55 7.99 -2.39 -0.02 1.54 16 41 H 0.11 1.33 8.00 -2.39 -0.02 1.32 16 42 H 0.09 2.12 7.98 -2.38 -0.02 2.10 16 43 H 0.05 2.04 6.35 -2.39 -0.02 2.03 16 44 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.09 1.44 8.09 -2.39 -0.02 1.42 16 46 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 47 H 0.05 1.64 7.39 -2.38 -0.02 1.62 16 48 H 0.04 1.32 7.14 -2.39 -0.02 1.30 16 49 H 0.04 1.83 4.68 -2.39 -0.01 1.82 16 50 H 0.26 16.20 8.31 -92.71 -0.77 15.43 16 51 H 0.03 1.38 7.69 -2.39 -0.02 1.36 16 52 H 0.04 1.32 8.11 -2.39 -0.02 1.30 16 Total: -1.00 -81.78 391.20 1.76 -80.02 By element: Atomic # 1 Polarization: 27.16 SS G_CDS: 0.11 Total: 27.26 kcal Atomic # 6 Polarization: 17.69 SS G_CDS: 6.32 Total: 24.01 kcal Atomic # 7 Polarization: -129.31 SS G_CDS: -6.25 Total: -135.56 kcal Atomic # 8 Polarization: -44.68 SS G_CDS: -0.09 Total: -44.77 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 1.67 Total: 49.03 kcal Total: -81.78 1.76 -80.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733289963.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.260 kcal (2) G-P(sol) polarization free energy of solvation -81.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds