Wall clock time and date at job start Tue Mar 31 2020 20:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47290 * 2 1 4 4 H 1.09002 * 109.47217 * 55.91065 * 3 2 1 5 5 N 1.46503 * 109.47096 * 295.90619 * 3 2 1 6 6 C 1.34775 * 119.99298 * 85.00425 * 5 3 2 7 7 C 1.50707 * 119.99775 * 180.02562 * 6 5 3 8 8 O 1.21284 * 120.00700 * 359.97438 * 6 5 3 9 9 C 1.50699 * 109.47002 * 175.91109 * 3 2 1 10 10 O 1.21282 * 120.00454 * 93.10587 * 9 3 2 11 11 N 1.34780 * 120.00385 * 273.10444 * 9 3 2 12 12 C 1.47489 * 125.65749 * 4.21388 * 11 9 3 13 13 C 1.55278 * 104.77747 * 155.88350 * 12 11 9 14 14 C 1.54479 * 101.42156 * 36.67304 * 13 12 11 15 15 C 1.47179 * 125.66756 * 184.52044 * 11 9 3 16 16 C 1.52233 * 110.29336 * 206.46035 * 14 13 12 17 17 C 1.53173 * 109.65011 * 178.00341 * 16 14 13 18 18 C 1.53186 * 109.27121 * 60.18646 * 17 16 14 19 19 N 1.46935 * 108.92369 * 304.77542 * 18 17 16 20 20 C 1.36935 * 120.69937 * 234.13232 * 19 18 17 21 21 H 1.08002 * 119.99843 * 152.29512 * 20 19 18 22 22 C 1.38815 * 120.00573 * 332.30147 * 20 19 18 23 23 N 1.31613 * 120.00322 * 159.87855 * 22 20 19 24 24 Si 1.86796 * 119.99404 * 339.87827 * 22 20 19 25 25 H 1.48498 * 109.47378 * 94.95500 * 24 22 20 26 26 H 1.48505 * 109.47293 * 214.95340 * 24 22 20 27 27 H 1.48503 * 109.47581 * 334.95282 * 24 22 20 28 28 C 1.47071 * 118.60043 * 54.16406 * 19 18 17 29 29 H 1.08997 * 109.47339 * 300.00431 * 1 2 3 30 30 H 1.09000 * 109.46219 * 60.00189 * 1 2 3 31 31 H 1.08994 * 109.47336 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47339 * 239.99568 * 2 1 3 33 33 H 1.09007 * 109.46590 * 119.99938 * 2 1 3 34 34 H 0.96992 * 120.00380 * 265.27832 * 5 3 2 35 35 H 1.09006 * 109.46892 * 59.99580 * 7 6 5 36 36 H 1.08994 * 109.47296 * 179.97438 * 7 6 5 37 37 H 1.09003 * 109.47085 * 299.99823 * 7 6 5 38 38 H 1.08996 * 110.35546 * 274.84757 * 12 11 9 39 39 H 1.09000 * 110.35178 * 37.13033 * 12 11 9 40 40 H 1.09005 * 111.23550 * 278.57415 * 13 12 11 41 41 H 1.09001 * 110.89899 * 154.62577 * 13 12 11 42 42 H 1.08995 * 109.91082 * 300.90219 * 15 11 9 43 43 H 1.09008 * 109.90925 * 61.98018 * 15 11 9 44 44 H 1.09000 * 109.44756 * 298.05748 * 16 14 13 45 45 H 1.09002 * 109.44377 * 57.98759 * 16 14 13 46 46 H 1.09006 * 109.50386 * 180.12454 * 17 16 14 47 47 H 1.08996 * 109.50459 * 300.24499 * 17 16 14 48 48 H 1.08998 * 109.56670 * 64.60810 * 18 17 16 49 49 H 1.08999 * 109.55993 * 184.94692 * 18 17 16 50 50 H 0.97003 * 119.99983 * 180.02562 * 23 22 20 51 51 H 1.09001 * 109.58222 * 187.75174 * 28 19 18 52 52 H 1.08999 * 109.58336 * 67.35160 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6181 1.9770 0.8511 5 7 1.6339 2.1040 -1.2424 6 6 0.4151 2.6715 -1.3363 7 6 -0.0031 3.3516 -2.6145 8 8 -0.3457 2.6342 -0.3924 9 6 3.5436 1.4436 0.1013 10 8 4.2193 1.4760 -0.9053 11 7 4.1377 1.4086 1.3106 12 6 3.4441 1.2793 2.6058 13 6 4.5057 0.6762 3.5651 14 6 5.7930 1.3763 3.0760 15 6 5.5856 1.4994 1.5584 16 6 7.0112 0.5173 3.3850 17 6 8.2729 1.2015 2.8500 18 6 8.4317 2.5678 3.5241 19 7 7.2035 3.3472 3.3165 20 6 7.2550 4.5993 2.7646 21 1 6.4090 4.9813 2.2124 22 6 8.3945 5.3778 2.9146 23 7 8.6210 6.3787 2.0905 24 14 9.6064 5.0046 4.2862 25 1 10.6948 4.1402 3.7636 26 1 10.1841 6.2744 4.7954 27 1 8.9038 4.3027 5.3903 28 6 5.9178 2.7544 3.7146 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8901 34 1 2.2406 2.1301 -1.9988 35 1 0.0157 2.6311 -3.4323 36 1 -1.0125 3.7471 -2.5023 37 1 0.6851 4.1680 -2.8336 38 1 3.1198 2.2572 2.9615 39 1 2.5914 0.6066 2.5137 40 1 4.5785 -0.4047 3.4441 41 1 4.2877 0.9381 4.6005 42 1 6.1015 0.6873 1.0462 43 1 5.9630 2.4594 1.2061 44 1 7.0990 0.3868 4.4636 45 1 6.8982 -0.4570 2.9097 46 1 9.1434 0.5835 3.0706 47 1 8.1849 1.3355 1.7719 48 1 8.6006 2.4305 4.5921 49 1 9.2777 3.0958 3.0840 50 1 9.4174 6.9224 2.1952 51 1 5.1010 3.3903 3.3732 52 1 5.8799 2.6589 4.7997 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733289964.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:04 Heat of formation + Delta-G solvation = -75.514227 kcal Electronic energy + Delta-G solvation = -31417.469372 eV Core-core repulsion = 27416.262711 eV Total energy + Delta-G solvation = -4001.206661 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.92162 -40.90893 -39.74088 -37.56010 -36.42789 -34.93934 -33.70724 -33.01303 -32.56069 -30.66226 -30.24359 -28.76486 -27.35108 -26.48303 -24.65349 -23.69430 -22.95916 -22.44501 -21.55701 -20.64732 -19.73387 -18.72064 -18.58000 -17.76255 -17.36001 -17.24189 -17.10945 -16.64384 -16.05417 -15.83103 -15.50195 -15.23624 -15.12965 -15.02227 -14.64666 -14.52098 -14.39742 -14.10040 -13.90764 -13.67821 -13.53555 -13.41808 -13.35066 -13.21228 -13.00089 -12.95235 -12.74323 -12.69767 -12.50710 -12.45107 -12.07383 -11.95521 -11.77767 -11.68909 -11.50972 -11.21425 -11.10390 -11.03585 -10.94951 -10.66432 -10.18550 -9.74291 -8.91504 -8.17557 -5.49646 1.29413 1.29623 1.40180 1.50034 1.60538 1.73587 2.34667 2.41012 3.03330 3.20738 3.32717 3.64501 3.66607 3.78675 3.82643 3.88902 3.97167 4.15537 4.22721 4.25444 4.31985 4.37950 4.44736 4.46516 4.52996 4.61371 4.62872 4.63206 4.77157 4.80628 4.82587 4.91176 4.96336 4.97839 5.02146 5.03665 5.07960 5.08614 5.12164 5.16603 5.23103 5.28199 5.36079 5.40513 5.41777 5.51512 5.84801 6.10721 6.40348 6.45465 6.91342 6.91916 7.16219 7.62422 8.01791 9.02907 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015505 B = 0.003262 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.395107 B = 8581.428230 C = 9599.142296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.119 4.119 3 C 0.138 3.862 4 H 0.104 0.896 5 N -0.716 5.716 6 C 0.509 3.491 7 C -0.168 4.168 8 O -0.576 6.576 9 C 0.519 3.481 10 O -0.579 6.579 11 N -0.610 5.610 12 C 0.087 3.913 13 C -0.107 4.107 14 C -0.080 4.080 15 C 0.132 3.868 16 C -0.087 4.087 17 C -0.134 4.134 18 C 0.118 3.882 19 N -0.618 5.618 20 C -0.243 4.243 21 H 0.038 0.962 22 C -0.039 4.039 23 N -0.963 5.963 24 Si 0.955 3.045 25 H -0.278 1.278 26 H -0.315 1.315 27 H -0.251 1.251 28 C 0.161 3.839 29 H 0.053 0.947 30 H 0.044 0.956 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.413 0.587 35 H 0.112 0.888 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.069 0.931 39 H 0.108 0.892 40 H 0.103 0.897 41 H 0.110 0.890 42 H 0.059 0.941 43 H 0.030 0.970 44 H 0.085 0.915 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.042 0.958 48 H 0.042 0.958 49 H 0.040 0.960 50 H 0.260 0.740 51 H 0.042 0.958 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.306 -18.321 -0.690 23.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.157 4.157 3 C 0.029 3.971 4 H 0.122 0.878 5 N -0.371 5.371 6 C 0.299 3.701 7 C -0.227 4.227 8 O -0.456 6.456 9 C 0.307 3.693 10 O -0.459 6.459 11 N -0.342 5.342 12 C -0.034 4.034 13 C -0.145 4.145 14 C -0.082 4.082 15 C 0.010 3.990 16 C -0.124 4.124 17 C -0.173 4.173 18 C -0.007 4.007 19 N -0.342 5.342 20 C -0.373 4.373 21 H 0.056 0.944 22 C -0.233 4.233 23 N -0.609 5.609 24 Si 0.783 3.217 25 H -0.205 1.205 26 H -0.244 1.244 27 H -0.175 1.175 28 C 0.037 3.963 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.112 0.888 34 H 0.250 0.750 35 H 0.130 0.870 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.087 0.913 39 H 0.126 0.874 40 H 0.121 0.879 41 H 0.128 0.872 42 H 0.078 0.922 43 H 0.049 0.951 44 H 0.104 0.896 45 H 0.101 0.899 46 H 0.102 0.898 47 H 0.060 0.940 48 H 0.059 0.941 49 H 0.058 0.942 50 H 0.069 0.931 51 H 0.061 0.939 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -15.450 -18.188 -0.647 23.873 hybrid contribution 1.460 1.133 -0.345 1.880 sum -13.990 -17.055 -0.993 22.082 Atomic orbital electron populations 1.21709 0.93559 1.01692 1.02171 1.21837 0.97621 0.92350 1.03942 1.20818 0.88822 0.97174 0.90251 0.87846 1.45965 1.17769 1.57414 1.15913 1.21463 0.80295 0.77176 0.91205 1.21947 1.04528 1.02379 0.93846 1.90706 1.52937 1.60466 1.41473 1.20730 0.90722 0.75790 0.82036 1.90678 1.66780 1.52143 1.36347 1.48645 1.08341 1.70690 1.06512 1.22824 0.96972 1.01974 0.81672 1.22860 0.90664 1.00972 0.99973 1.21494 0.97496 0.96899 0.92294 1.21761 0.80300 0.99959 0.97013 1.21295 0.91498 0.97376 1.02249 1.22002 0.99605 0.96090 0.99611 1.21431 0.88655 0.92679 0.97903 1.44436 1.02908 1.14041 1.72803 1.18722 1.01530 0.91768 1.25275 0.94435 1.25959 1.00541 0.96283 1.00539 1.69994 1.28865 1.23500 1.38547 0.85780 0.78992 0.75457 0.81427 1.20518 1.24399 1.17477 1.20982 0.86605 0.91889 0.96872 0.92751 0.93713 0.91276 0.91154 0.88834 0.74984 0.86987 0.88421 0.88180 0.91304 0.87426 0.87878 0.87201 0.92225 0.95126 0.89620 0.89869 0.89794 0.93960 0.94056 0.94195 0.93079 0.93896 0.93316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 8.50 71.98 0.61 -1.79 16 2 C -0.12 -2.14 5.51 30.59 0.17 -1.97 16 3 C 0.14 3.23 1.98 44.24 0.09 3.32 16 4 H 0.10 2.53 6.93 -2.39 -0.02 2.51 16 5 N -0.72 -16.10 5.00 -446.09 -2.23 -18.33 16 6 C 0.51 11.14 6.47 87.66 0.57 11.71 16 7 C -0.17 -2.24 10.32 71.24 0.74 -1.50 16 8 O -0.58 -16.20 14.22 -3.04 -0.04 -16.25 16 9 C 0.52 15.55 7.04 87.66 0.62 16.17 16 10 O -0.58 -21.76 16.38 -3.04 -0.05 -21.81 16 11 N -0.61 -17.13 3.33 -811.80 -2.70 -19.84 16 12 C 0.09 1.69 5.98 86.97 0.52 2.21 16 13 C -0.11 -1.80 6.01 31.88 0.19 -1.61 16 14 C -0.08 -2.13 0.54 -51.91 -0.03 -2.16 16 15 C 0.13 4.38 5.05 86.47 0.44 4.82 16 16 C -0.09 -2.06 4.52 30.40 0.14 -1.92 16 17 C -0.13 -4.20 5.92 30.71 0.18 -4.01 16 18 C 0.12 4.78 4.18 86.36 0.36 5.14 16 19 N -0.62 -28.22 2.39 -700.23 -1.68 -29.90 16 20 C -0.24 -14.01 10.05 84.03 0.84 -13.17 16 21 H 0.04 2.44 8.06 -2.91 -0.02 2.42 16 22 C -0.04 -2.32 5.24 84.86 0.44 -1.88 16 23 N -0.96 -62.29 13.97 21.65 0.30 -61.99 16 24 Si 0.95 46.89 24.36 68.60 1.67 48.56 16 25 H -0.28 -13.01 6.71 99.48 0.67 -12.34 16 26 H -0.31 -15.85 7.11 99.48 0.71 -15.14 16 27 H -0.25 -11.39 6.47 99.48 0.64 -10.75 16 28 C 0.16 5.70 4.97 86.07 0.43 6.13 16 29 H 0.05 1.08 7.79 -2.39 -0.02 1.06 16 30 H 0.04 0.92 5.67 -2.39 -0.01 0.90 16 31 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.09 1.34 7.04 -2.38 -0.02 1.33 16 34 H 0.41 8.97 7.81 -92.71 -0.72 8.25 16 35 H 0.11 0.96 8.14 -2.38 -0.02 0.94 16 36 H 0.10 1.24 8.12 -2.39 -0.02 1.22 16 37 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.07 1.45 7.89 -2.39 -0.02 1.43 16 39 H 0.11 1.43 6.60 -2.39 -0.02 1.42 16 40 H 0.10 1.29 8.02 -2.38 -0.02 1.27 16 41 H 0.11 1.44 7.98 -2.39 -0.02 1.42 16 42 H 0.06 1.98 7.61 -2.39 -0.02 1.96 16 43 H 0.03 1.37 7.56 -2.38 -0.02 1.35 16 44 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.08 1.60 8.11 -2.39 -0.02 1.58 16 46 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 47 H 0.04 1.51 7.28 -2.39 -0.02 1.49 16 48 H 0.04 1.56 7.02 -2.39 -0.02 1.55 16 49 H 0.04 1.85 4.51 -2.39 -0.01 1.84 16 50 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 51 H 0.04 1.65 7.48 -2.39 -0.02 1.64 16 52 H 0.05 1.55 8.11 -2.39 -0.02 1.53 16 Total: -1.00 -80.36 388.92 1.66 -78.70 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: 0.09 Total: 21.35 kcal Atomic # 6 Polarization: 13.19 SS G_CDS: 6.30 Total: 19.49 kcal Atomic # 7 Polarization: -123.74 SS G_CDS: -6.31 Total: -130.05 kcal Atomic # 8 Polarization: -37.96 SS G_CDS: -0.09 Total: -38.05 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 1.67 Total: 48.56 kcal Total: -80.36 1.66 -78.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733289964.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.185 kcal (2) G-P(sol) polarization free energy of solvation -80.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds