Wall clock time and date at job start Tue Mar 31 2020 20:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46683 * 2 1 4 4 H 1.08995 * 109.47041 * 57.79423 * 3 2 1 5 5 N 1.46501 * 109.47171 * 297.78769 * 3 2 1 6 6 C 1.34773 * 119.99766 * 85.00190 * 5 3 2 7 7 C 1.50699 * 119.99811 * 179.97438 * 6 5 3 8 8 O 1.21285 * 120.00140 * 0.02562 * 6 5 3 9 9 C 1.50705 * 109.46717 * 177.78641 * 3 2 1 10 10 O 1.21285 * 119.99499 * 100.82388 * 9 3 2 11 11 N 1.34775 * 120.00152 * 280.82445 * 9 3 2 12 12 C 1.48184 * 127.80259 * 175.77204 * 11 9 3 13 13 C 1.54501 * 104.63881 * 140.70543 * 12 11 9 14 14 C 1.53824 * 104.79072 * 23.77243 * 13 12 11 15 15 C 1.48248 * 127.80322 * 355.77398 * 11 9 3 16 16 C 1.52478 * 110.27172 * 118.80925 * 14 13 12 17 17 C 1.53128 * 109.61730 * 182.07088 * 16 14 13 18 18 C 1.53185 * 109.32544 * 299.49437 * 17 16 14 19 19 N 1.47013 * 108.84106 * 55.07226 * 18 17 16 20 20 C 1.36940 * 120.66201 * 125.96932 * 19 18 17 21 21 H 1.07997 * 120.00001 * 331.03861 * 20 19 18 22 22 C 1.38814 * 119.99679 * 151.03763 * 20 19 18 23 23 N 1.31613 * 120.00016 * 345.03554 * 22 20 19 24 24 Si 1.86805 * 119.99549 * 165.03291 * 22 20 19 25 25 H 1.48500 * 109.46785 * 90.00551 * 24 22 20 26 26 H 1.48501 * 109.47018 * 209.99755 * 24 22 20 27 27 H 1.48492 * 109.47334 * 330.00110 * 24 22 20 28 28 C 1.47027 * 118.65311 * 305.97556 * 19 18 17 29 29 H 1.09001 * 109.46824 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47214 * 300.00279 * 1 2 3 31 31 H 1.09001 * 109.46816 * 60.00259 * 1 2 3 32 32 H 1.08997 * 109.47234 * 240.00278 * 2 1 3 33 33 H 1.08993 * 109.46976 * 119.99439 * 2 1 3 34 34 H 0.96996 * 119.99580 * 265.00448 * 5 3 2 35 35 H 1.08998 * 109.47201 * 90.00122 * 7 6 5 36 36 H 1.09003 * 109.46869 * 210.00045 * 7 6 5 37 37 H 1.09000 * 109.47023 * 329.99823 * 7 6 5 38 38 H 1.09010 * 110.40001 * 21.91647 * 12 11 9 39 39 H 1.08999 * 110.50561 * 259.54940 * 12 11 9 40 40 H 1.08998 * 110.37952 * 264.94122 * 13 12 11 41 41 H 1.08997 * 110.46787 * 142.64695 * 13 12 11 42 42 H 1.09002 * 110.42831 * 100.41333 * 15 11 9 43 43 H 1.08998 * 110.42926 * 337.92527 * 15 11 9 44 44 H 1.09003 * 109.44452 * 62.02661 * 16 14 13 45 45 H 1.09000 * 109.44379 * 302.11950 * 16 14 13 46 46 H 1.08999 * 109.50104 * 59.46337 * 17 16 14 47 47 H 1.08997 * 109.49624 * 179.52950 * 17 16 14 48 48 H 1.08997 * 109.56952 * 174.92867 * 18 17 16 49 49 H 1.09001 * 109.56954 * 295.28804 * 18 17 16 50 50 H 0.97008 * 119.99824 * 180.02562 * 23 22 20 51 51 H 1.09004 * 109.57933 * 292.97477 * 28 19 18 52 52 H 1.09000 * 109.69479 * 172.64007 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6446 1.9677 0.8695 5 7 1.5955 2.1176 -1.2219 6 6 0.3745 2.6858 -1.2719 7 6 -0.0824 3.3807 -2.5286 8 8 -0.3564 2.6387 -0.3051 9 6 3.5460 1.4430 0.0549 10 8 4.1895 1.6271 -0.9565 11 7 4.1776 1.2387 1.2278 12 6 5.6353 1.1186 1.4655 13 6 5.8782 1.8734 2.7915 14 6 4.5203 1.8456 3.5137 15 6 3.5711 1.0834 2.5716 16 6 4.6442 1.1098 4.8435 17 6 3.2746 1.0459 5.5252 18 6 2.7711 2.4690 5.7859 19 7 2.7698 3.2120 4.5173 20 6 1.6350 3.8389 4.0764 21 1 0.6641 3.4512 4.3469 22 6 1.7328 4.9729 3.2817 23 7 2.8773 5.6166 3.1915 24 14 0.2400 5.5851 2.3403 25 1 -0.5176 6.5444 3.1835 26 1 0.6835 6.2632 1.0958 27 1 -0.6324 4.4348 1.9933 28 6 4.0114 3.2680 3.7318 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 2.1802 2.1556 -1.9950 35 1 -0.5895 2.6650 -3.1757 36 1 -0.7695 4.1862 -2.2691 37 1 0.7812 3.7936 -3.0500 38 1 6.1925 1.5869 0.6540 39 1 5.9207 0.0715 1.5665 40 1 6.1814 2.9014 2.5930 41 1 6.6354 1.3636 3.3872 42 1 3.5247 0.0303 2.8487 43 1 2.5759 1.5276 2.5934 44 1 5.3458 1.6401 5.4875 45 1 5.0088 0.0981 4.6658 46 1 2.5700 0.5235 4.8780 47 1 3.3638 0.5124 6.4715 48 1 1.7589 2.4302 6.1883 49 1 3.4304 2.9647 6.4984 50 1 2.9455 6.4092 2.6364 51 1 4.7608 3.8451 4.2737 52 1 3.8154 3.7378 2.7680 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733289965.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:08 Heat of formation + Delta-G solvation = -53.453341 kcal Electronic energy + Delta-G solvation = -32884.773492 eV Core-core repulsion = 28884.523463 eV Total energy + Delta-G solvation = -4000.250029 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.48418 -39.45920 -38.21570 -35.74211 -35.09293 -33.12823 -32.50318 -31.37916 -29.98132 -29.64902 -29.08598 -26.86753 -25.56216 -25.20749 -23.08244 -22.20838 -21.75316 -20.49246 -20.12878 -19.29314 -18.23000 -17.35836 -16.63868 -16.33361 -15.98362 -15.76079 -15.28776 -14.91658 -14.66885 -14.04064 -13.97948 -13.85298 -13.74013 -13.32550 -13.28680 -13.01680 -12.96099 -12.54597 -12.47224 -12.28951 -12.12807 -12.00446 -11.82598 -11.78496 -11.52964 -11.37517 -11.08582 -10.99880 -10.91735 -10.78318 -10.57313 -10.39853 -10.24881 -10.15016 -9.82136 -9.68588 -9.64566 -9.46691 -9.39004 -8.86823 -8.49585 -8.40543 -6.65000 -5.77527 -3.21820 2.68989 2.87662 2.99925 3.44280 3.52521 3.57143 3.68038 4.55157 4.56629 4.92646 4.95236 5.03313 5.11641 5.17725 5.24846 5.29152 5.41544 5.42278 5.48177 5.50189 5.54603 5.60004 5.67764 5.74248 5.78850 5.87590 5.88653 5.92979 5.98235 6.03368 6.10634 6.17921 6.20610 6.31127 6.32916 6.36212 6.42044 6.52375 6.59101 6.66169 6.68321 6.79145 6.88466 6.97726 7.29004 7.63297 7.68755 7.77548 7.82902 8.28500 8.44235 8.45885 9.22835 9.85635 10.41932 11.30193 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009345 B = 0.006412 C = 0.004756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2995.622323 B = 4365.642598 C = 5885.295873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.122 4.122 3 C 0.128 3.872 4 H 0.121 0.879 5 N -0.714 5.714 6 C 0.506 3.494 7 C -0.171 4.171 8 O -0.527 6.527 9 C 0.539 3.461 10 O -0.554 6.554 11 N -0.611 5.611 12 C 0.108 3.892 13 C -0.125 4.125 14 C -0.095 4.095 15 C 0.114 3.886 16 C -0.093 4.093 17 C -0.137 4.137 18 C 0.143 3.857 19 N -0.590 5.590 20 C -0.254 4.254 21 H 0.065 0.935 22 C 0.011 3.989 23 N -0.902 5.902 24 Si 0.886 3.114 25 H -0.290 1.290 26 H -0.293 1.293 27 H -0.261 1.261 28 C 0.189 3.811 29 H 0.047 0.953 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.406 0.594 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.061 0.939 43 H 0.099 0.901 44 H 0.059 0.941 45 H 0.048 0.952 46 H 0.058 0.942 47 H 0.050 0.950 48 H 0.053 0.947 49 H 0.016 0.984 50 H 0.252 0.748 51 H 0.019 0.981 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.014 -11.700 -5.857 13.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.161 4.161 3 C 0.020 3.980 4 H 0.139 0.861 5 N -0.369 5.369 6 C 0.293 3.707 7 C -0.231 4.231 8 O -0.403 6.403 9 C 0.328 3.672 10 O -0.433 6.433 11 N -0.343 5.343 12 C -0.015 4.015 13 C -0.164 4.164 14 C -0.097 4.097 15 C -0.008 4.008 16 C -0.131 4.131 17 C -0.176 4.176 18 C 0.017 3.983 19 N -0.313 5.313 20 C -0.384 4.384 21 H 0.083 0.917 22 C -0.188 4.188 23 N -0.546 5.546 24 Si 0.715 3.285 25 H -0.217 1.217 26 H -0.219 1.219 27 H -0.185 1.185 28 C 0.062 3.938 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.243 0.757 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.080 0.920 43 H 0.117 0.883 44 H 0.077 0.923 45 H 0.066 0.934 46 H 0.077 0.923 47 H 0.069 0.931 48 H 0.071 0.929 49 H 0.034 0.966 50 H 0.062 0.938 51 H 0.037 0.963 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.767 -11.445 -5.888 12.991 hybrid contribution -0.244 0.537 -0.765 0.966 sum 1.522 -10.908 -6.654 12.868 Atomic orbital electron populations 1.21787 0.93952 1.00594 1.03523 1.21796 0.97749 0.94003 1.02506 1.20848 0.90678 0.95437 0.91084 0.86137 1.45807 1.17670 1.57390 1.16038 1.20737 0.81290 0.78333 0.90312 1.21866 1.03308 1.01985 0.95908 1.90808 1.53861 1.58498 1.37159 1.20092 0.89533 0.75649 0.81959 1.90634 1.67924 1.50904 1.33830 1.48903 1.08227 1.70036 1.07173 1.22305 0.81314 0.99782 0.98063 1.22558 0.97568 1.01250 0.95033 1.21855 0.93356 1.00744 0.93794 1.22609 0.99513 0.98994 0.79719 1.21379 0.97590 0.98440 0.95722 1.22064 0.96720 0.99695 0.99140 1.20931 0.98411 0.89946 0.89033 1.44078 1.09163 1.59735 1.18277 1.19113 0.85645 1.05069 1.28544 0.91709 1.25004 0.96621 0.95594 1.01611 1.69998 1.24576 1.18728 1.41256 0.86509 0.83263 0.79464 0.79307 1.21697 1.21918 1.18499 1.20744 0.86965 0.88104 0.97941 0.93396 0.91277 0.92672 0.91697 0.90722 0.75719 0.89040 0.88882 0.90224 0.90426 0.91589 0.90648 0.90832 0.92037 0.88285 0.92272 0.93375 0.92344 0.93099 0.92877 0.96588 0.93770 0.96278 0.89363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 8.47 37.16 0.31 -1.68 16 2 C -0.12 -1.68 5.61 -26.73 -0.15 -1.83 16 3 C 0.13 2.13 2.17 -69.07 -0.15 1.98 16 4 H 0.12 2.42 6.35 -51.93 -0.33 2.09 16 5 N -0.71 -11.02 4.96 -54.93 -0.27 -11.29 16 6 C 0.51 8.12 6.38 -10.99 -0.07 8.05 16 7 C -0.17 -1.93 10.30 36.01 0.37 -1.56 16 8 O -0.53 -10.64 14.23 5.55 0.08 -10.57 16 9 C 0.54 9.53 7.16 -10.98 -0.08 9.45 16 10 O -0.55 -10.68 16.17 5.55 0.09 -10.59 16 11 N -0.61 -10.12 3.32 -169.40 -0.56 -10.69 16 12 C 0.11 1.55 7.07 -2.33 -0.02 1.54 16 13 C -0.13 -1.84 6.29 -25.51 -0.16 -2.00 16 14 C -0.09 -1.60 0.68 -154.04 -0.11 -1.70 16 15 C 0.11 1.87 4.66 -2.59 -0.01 1.86 16 16 C -0.09 -1.39 4.34 -26.93 -0.12 -1.50 16 17 C -0.14 -2.15 5.89 -26.57 -0.16 -2.31 16 18 C 0.14 2.83 6.50 -3.67 -0.02 2.81 16 19 N -0.59 -13.90 2.50 -172.50 -0.43 -14.33 16 20 C -0.25 -6.79 9.59 -15.06 -0.14 -6.93 16 21 H 0.07 1.73 7.87 -52.49 -0.41 1.32 16 22 C 0.01 0.30 4.96 -17.43 -0.09 0.21 16 23 N -0.90 -26.09 11.15 55.49 0.62 -25.48 16 24 Si 0.89 22.67 29.58 -169.99 -5.03 17.64 16 25 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 26 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 27 H -0.26 -6.81 7.11 56.52 0.40 -6.41 16 28 C 0.19 4.21 3.64 -3.94 -0.01 4.20 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 1.13 7.68 -51.93 -0.40 0.73 16 31 H 0.05 0.81 5.72 -51.93 -0.30 0.51 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.97 7.98 -51.93 -0.41 0.56 16 34 H 0.41 5.62 7.73 -40.82 -0.32 5.30 16 35 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.08 1.16 7.86 -51.92 -0.41 0.76 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.07 1.22 7.70 -51.93 -0.40 0.82 16 41 H 0.07 0.90 7.70 -51.93 -0.40 0.50 16 42 H 0.06 0.88 7.70 -51.93 -0.40 0.48 16 43 H 0.10 1.93 6.10 -51.93 -0.32 1.61 16 44 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 45 H 0.05 0.61 8.13 -51.93 -0.42 0.19 16 46 H 0.06 0.93 7.20 -51.93 -0.37 0.55 16 47 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 48 H 0.05 1.05 7.94 -51.93 -0.41 0.63 16 49 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 50 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 51 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 52 H 0.09 2.30 6.11 -51.93 -0.32 1.99 16 LS Contribution 396.45 15.07 5.97 5.97 Total: -1.00 -32.38 396.45 -9.11 -41.49 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -8.98 Total: 7.24 kcal Atomic # 6 Polarization: 11.19 SS G_CDS: -0.60 Total: 10.59 kcal Atomic # 7 Polarization: -61.14 SS G_CDS: -0.65 Total: -61.79 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: 0.17 Total: -21.15 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.03 Total: 17.64 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.38 -9.11 -41.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733289965.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.960 kcal (2) G-P(sol) polarization free energy of solvation -32.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds