Wall clock time and date at job start Tue Mar 31 2020 20:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46683 * 2 1 4 4 H 1.08995 * 109.47041 * 57.79423 * 3 2 1 5 5 N 1.46501 * 109.47171 * 297.78769 * 3 2 1 6 6 C 1.34773 * 119.99766 * 85.00190 * 5 3 2 7 7 C 1.50699 * 119.99811 * 179.97438 * 6 5 3 8 8 O 1.21285 * 120.00140 * 0.02562 * 6 5 3 9 9 C 1.50705 * 109.46717 * 177.78641 * 3 2 1 10 10 O 1.21285 * 119.99499 * 100.82388 * 9 3 2 11 11 N 1.34775 * 120.00152 * 280.82445 * 9 3 2 12 12 C 1.48184 * 127.80259 * 175.77204 * 11 9 3 13 13 C 1.54501 * 104.63881 * 140.70543 * 12 11 9 14 14 C 1.53824 * 104.79072 * 23.77243 * 13 12 11 15 15 C 1.48248 * 127.80322 * 355.77398 * 11 9 3 16 16 C 1.52478 * 110.27172 * 118.80925 * 14 13 12 17 17 C 1.53128 * 109.61730 * 182.07088 * 16 14 13 18 18 C 1.53185 * 109.32544 * 299.49437 * 17 16 14 19 19 N 1.47013 * 108.84106 * 55.07226 * 18 17 16 20 20 C 1.36940 * 120.66201 * 125.96932 * 19 18 17 21 21 H 1.07997 * 120.00001 * 331.03861 * 20 19 18 22 22 C 1.38814 * 119.99679 * 151.03763 * 20 19 18 23 23 N 1.31613 * 120.00016 * 345.03554 * 22 20 19 24 24 Si 1.86805 * 119.99549 * 165.03291 * 22 20 19 25 25 H 1.48500 * 109.46785 * 90.00551 * 24 22 20 26 26 H 1.48501 * 109.47018 * 209.99755 * 24 22 20 27 27 H 1.48492 * 109.47334 * 330.00110 * 24 22 20 28 28 C 1.47027 * 118.65311 * 305.97556 * 19 18 17 29 29 H 1.09001 * 109.46824 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47214 * 300.00279 * 1 2 3 31 31 H 1.09001 * 109.46816 * 60.00259 * 1 2 3 32 32 H 1.08997 * 109.47234 * 240.00278 * 2 1 3 33 33 H 1.08993 * 109.46976 * 119.99439 * 2 1 3 34 34 H 0.96996 * 119.99580 * 265.00448 * 5 3 2 35 35 H 1.08998 * 109.47201 * 90.00122 * 7 6 5 36 36 H 1.09003 * 109.46869 * 210.00045 * 7 6 5 37 37 H 1.09000 * 109.47023 * 329.99823 * 7 6 5 38 38 H 1.09010 * 110.40001 * 21.91647 * 12 11 9 39 39 H 1.08999 * 110.50561 * 259.54940 * 12 11 9 40 40 H 1.08998 * 110.37952 * 264.94122 * 13 12 11 41 41 H 1.08997 * 110.46787 * 142.64695 * 13 12 11 42 42 H 1.09002 * 110.42831 * 100.41333 * 15 11 9 43 43 H 1.08998 * 110.42926 * 337.92527 * 15 11 9 44 44 H 1.09003 * 109.44452 * 62.02661 * 16 14 13 45 45 H 1.09000 * 109.44379 * 302.11950 * 16 14 13 46 46 H 1.08999 * 109.50104 * 59.46337 * 17 16 14 47 47 H 1.08997 * 109.49624 * 179.52950 * 17 16 14 48 48 H 1.08997 * 109.56952 * 174.92867 * 18 17 16 49 49 H 1.09001 * 109.56954 * 295.28804 * 18 17 16 50 50 H 0.97008 * 119.99824 * 180.02562 * 23 22 20 51 51 H 1.09004 * 109.57933 * 292.97477 * 28 19 18 52 52 H 1.09000 * 109.69479 * 172.64007 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6446 1.9677 0.8695 5 7 1.5955 2.1176 -1.2219 6 6 0.3745 2.6858 -1.2719 7 6 -0.0824 3.3807 -2.5286 8 8 -0.3564 2.6387 -0.3051 9 6 3.5460 1.4430 0.0549 10 8 4.1895 1.6271 -0.9565 11 7 4.1776 1.2387 1.2278 12 6 5.6353 1.1186 1.4655 13 6 5.8782 1.8734 2.7915 14 6 4.5203 1.8456 3.5137 15 6 3.5711 1.0834 2.5716 16 6 4.6442 1.1098 4.8435 17 6 3.2746 1.0459 5.5252 18 6 2.7711 2.4690 5.7859 19 7 2.7698 3.2120 4.5173 20 6 1.6350 3.8389 4.0764 21 1 0.6641 3.4512 4.3469 22 6 1.7328 4.9729 3.2817 23 7 2.8773 5.6166 3.1915 24 14 0.2400 5.5851 2.3403 25 1 -0.5176 6.5444 3.1835 26 1 0.6835 6.2632 1.0958 27 1 -0.6324 4.4348 1.9933 28 6 4.0114 3.2680 3.7318 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 2.1802 2.1556 -1.9950 35 1 -0.5895 2.6650 -3.1757 36 1 -0.7695 4.1862 -2.2691 37 1 0.7812 3.7936 -3.0500 38 1 6.1925 1.5869 0.6540 39 1 5.9207 0.0715 1.5665 40 1 6.1814 2.9014 2.5930 41 1 6.6354 1.3636 3.3872 42 1 3.5247 0.0303 2.8487 43 1 2.5759 1.5276 2.5934 44 1 5.3458 1.6401 5.4875 45 1 5.0088 0.0981 4.6658 46 1 2.5700 0.5235 4.8780 47 1 3.3638 0.5124 6.4715 48 1 1.7589 2.4302 6.1883 49 1 3.4304 2.9647 6.4984 50 1 2.9455 6.4092 2.6364 51 1 4.7608 3.8451 4.2737 52 1 3.8154 3.7378 2.7680 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733289965.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:07 Heat of formation + Delta-G solvation = -74.959715 kcal Electronic energy + Delta-G solvation = -32885.706078 eV Core-core repulsion = 28884.523463 eV Total energy + Delta-G solvation = -4001.182615 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.82199 -40.80312 -39.64563 -37.28883 -36.41714 -34.89237 -33.77475 -32.86111 -31.72918 -30.77464 -30.35740 -28.12105 -27.37870 -26.71264 -24.39254 -23.90281 -22.95747 -21.91403 -21.47219 -20.61192 -19.73911 -18.68164 -18.50845 -17.69375 -17.30222 -17.04064 -16.79642 -16.53666 -16.02937 -15.74406 -15.40025 -15.29342 -15.05737 -14.83619 -14.57838 -14.50326 -14.33363 -13.95659 -13.73547 -13.44243 -13.39595 -13.30759 -13.23063 -12.97247 -12.91817 -12.84734 -12.79366 -12.54624 -12.51968 -12.35861 -12.20331 -11.96671 -11.90028 -11.71040 -11.40450 -11.09816 -11.00428 -10.96155 -10.89451 -10.56272 -10.17620 -9.75803 -8.64583 -7.91867 -5.34843 1.31068 1.33493 1.37340 1.55121 1.60016 1.75693 2.34572 2.44496 3.24838 3.25368 3.57820 3.75784 3.81148 3.87584 3.91561 3.97990 4.02591 4.29557 4.31181 4.35413 4.39730 4.40326 4.49475 4.49815 4.58364 4.59017 4.72794 4.78622 4.85506 4.87703 4.92460 4.94421 4.96094 5.00057 5.05389 5.09586 5.17950 5.20517 5.25491 5.32371 5.39439 5.41950 5.43237 5.54119 5.60282 5.70079 5.78977 6.36595 6.42448 6.47806 6.92407 7.14457 7.20687 7.87575 8.36313 9.12510 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009345 B = 0.006412 C = 0.004756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2995.622323 B = 4365.642598 C = 5885.295873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.111 4.111 3 C 0.130 3.870 4 H 0.078 0.922 5 N -0.710 5.710 6 C 0.497 3.503 7 C -0.164 4.164 8 O -0.577 6.577 9 C 0.534 3.466 10 O -0.574 6.574 11 N -0.615 5.615 12 C 0.108 3.892 13 C -0.118 4.118 14 C -0.089 4.089 15 C 0.121 3.879 16 C -0.088 4.088 17 C -0.127 4.127 18 C 0.136 3.864 19 N -0.605 5.605 20 C -0.243 4.243 21 H 0.060 0.940 22 C -0.034 4.034 23 N -0.928 5.928 24 Si 0.933 3.067 25 H -0.285 1.285 26 H -0.302 1.302 27 H -0.273 1.273 28 C 0.201 3.799 29 H 0.074 0.926 30 H 0.037 0.963 31 H 0.046 0.954 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.415 0.585 35 H 0.123 0.877 36 H 0.088 0.912 37 H 0.100 0.900 38 H 0.068 0.932 39 H 0.105 0.895 40 H 0.049 0.951 41 H 0.113 0.887 42 H 0.099 0.901 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.092 0.908 46 H 0.059 0.941 47 H 0.085 0.915 48 H 0.047 0.953 49 H 0.012 0.988 50 H 0.244 0.756 51 H -0.011 1.011 52 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.172 -15.109 -5.916 16.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.150 4.150 3 C 0.021 3.979 4 H 0.096 0.904 5 N -0.365 5.365 6 C 0.286 3.714 7 C -0.223 4.223 8 O -0.456 6.456 9 C 0.323 3.677 10 O -0.455 6.455 11 N -0.346 5.346 12 C -0.014 4.014 13 C -0.157 4.157 14 C -0.092 4.092 15 C -0.001 4.001 16 C -0.126 4.126 17 C -0.165 4.165 18 C 0.011 3.989 19 N -0.328 5.328 20 C -0.373 4.373 21 H 0.078 0.922 22 C -0.230 4.230 23 N -0.575 5.575 24 Si 0.763 3.237 25 H -0.212 1.212 26 H -0.229 1.229 27 H -0.198 1.198 28 C 0.075 3.925 29 H 0.093 0.907 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.253 0.747 35 H 0.142 0.858 36 H 0.106 0.894 37 H 0.119 0.881 38 H 0.086 0.914 39 H 0.123 0.877 40 H 0.068 0.932 41 H 0.131 0.869 42 H 0.117 0.883 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.110 0.890 46 H 0.078 0.922 47 H 0.103 0.897 48 H 0.066 0.934 49 H 0.030 0.970 50 H 0.053 0.947 51 H 0.007 0.993 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.949 -14.877 -5.928 16.284 hybrid contribution -0.612 1.616 -0.670 1.853 sum 2.337 -13.261 -6.598 14.995 Atomic orbital electron populations 1.21689 0.94182 1.01593 1.01621 1.21755 0.97334 0.92079 1.03853 1.20762 0.90192 0.96839 0.90106 0.90357 1.45858 1.17727 1.57046 1.15883 1.21658 0.80811 0.77715 0.91232 1.21911 1.04250 1.02160 0.93960 1.90787 1.55163 1.60393 1.39300 1.20234 0.89794 0.75525 0.82160 1.90612 1.68329 1.52056 1.34519 1.49019 1.09455 1.69307 1.06849 1.22518 0.79671 1.01872 0.97330 1.22539 0.97046 1.00538 0.95553 1.21681 0.94463 0.97090 0.95965 1.22543 0.97434 1.00538 0.79566 1.21394 0.97114 1.00365 0.93706 1.21949 0.97105 0.96378 1.01097 1.21141 0.98471 0.92251 0.87069 1.44297 1.08536 1.59795 1.20156 1.19305 0.86764 1.04206 1.27054 0.92200 1.25424 0.97943 0.96486 1.03175 1.70122 1.25685 1.19179 1.42477 0.85760 0.81343 0.78437 0.78118 1.21210 1.22912 1.19763 1.20448 0.85771 0.91383 0.94866 0.90728 0.94371 0.93464 0.89902 0.89566 0.74685 0.85846 0.89358 0.88108 0.91378 0.87664 0.93244 0.86888 0.88285 0.91975 0.92059 0.88999 0.92225 0.89666 0.93404 0.97026 0.94661 0.99288 0.93938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.73 8.47 71.98 0.61 -3.12 16 2 C -0.11 -2.97 5.61 30.60 0.17 -2.80 16 3 C 0.13 4.42 2.17 44.25 0.10 4.52 16 4 H 0.08 3.38 6.35 -2.39 -0.02 3.36 16 5 N -0.71 -22.24 4.96 -446.08 -2.21 -24.45 16 6 C 0.50 16.27 6.38 87.66 0.56 16.83 16 7 C -0.16 -3.53 10.30 71.24 0.73 -2.79 16 8 O -0.58 -24.42 14.23 -3.05 -0.04 -24.46 16 9 C 0.53 18.81 7.16 87.66 0.63 19.43 16 10 O -0.57 -21.94 16.17 -3.05 -0.05 -21.99 16 11 N -0.61 -19.65 3.32 -808.23 -2.68 -22.34 16 12 C 0.11 2.80 7.07 86.57 0.61 3.42 16 13 C -0.12 -3.19 6.29 31.38 0.20 -2.99 16 14 C -0.09 -2.87 0.68 -51.88 -0.04 -2.90 16 15 C 0.12 3.79 4.66 86.36 0.40 4.20 16 16 C -0.09 -2.24 4.34 30.46 0.13 -2.11 16 17 C -0.13 -3.53 5.89 30.70 0.18 -3.35 16 18 C 0.14 5.27 6.50 86.34 0.56 5.83 16 19 N -0.60 -29.19 2.50 -699.67 -1.75 -30.93 16 20 C -0.24 -13.47 9.59 84.03 0.81 -12.66 16 21 H 0.06 3.33 7.87 -2.91 -0.02 3.30 16 22 C -0.03 -2.01 4.96 84.86 0.42 -1.58 16 23 N -0.93 -56.61 11.15 21.65 0.24 -56.37 16 24 Si 0.93 49.35 29.58 68.60 2.03 51.38 16 25 H -0.29 -14.67 7.11 99.48 0.71 -13.96 16 26 H -0.30 -16.26 7.11 99.48 0.71 -15.55 16 27 H -0.27 -14.80 7.11 99.48 0.71 -14.10 16 28 C 0.20 9.26 3.64 86.16 0.31 9.58 16 29 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.04 1.29 7.68 -2.39 -0.02 1.27 16 31 H 0.05 1.38 5.72 -2.39 -0.01 1.36 16 32 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.09 2.08 7.98 -2.39 -0.02 2.06 16 34 H 0.42 11.38 7.73 -92.71 -0.72 10.66 16 35 H 0.12 1.87 8.14 -2.39 -0.02 1.86 16 36 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.07 1.93 7.86 -2.38 -0.02 1.91 16 39 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.05 1.59 7.70 -2.39 -0.02 1.58 16 41 H 0.11 2.20 7.70 -2.39 -0.02 2.19 16 42 H 0.10 2.40 7.70 -2.39 -0.02 2.38 16 43 H 0.06 2.46 6.10 -2.39 -0.01 2.45 16 44 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.09 1.67 8.13 -2.39 -0.02 1.65 16 46 H 0.06 1.68 7.20 -2.39 -0.02 1.66 16 47 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 48 H 0.05 1.87 7.94 -2.39 -0.02 1.85 16 49 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 50 H 0.24 14.77 8.31 -92.70 -0.77 14.00 16 51 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 52 H 0.04 2.34 6.11 -2.39 -0.01 2.33 16 Total: -1.00 -76.98 396.45 2.12 -74.86 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: 0.19 Total: 24.81 kcal Atomic # 6 Polarization: 23.10 SS G_CDS: 6.39 Total: 29.49 kcal Atomic # 7 Polarization: -127.68 SS G_CDS: -6.40 Total: -134.09 kcal Atomic # 8 Polarization: -46.36 SS G_CDS: -0.09 Total: -46.46 kcal Atomic # 14 Polarization: 49.35 SS G_CDS: 2.03 Total: 51.38 kcal Total: -76.98 2.12 -74.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733289965.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.096 kcal (2) G-P(sol) polarization free energy of solvation -76.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds