Wall clock time and date at job start Tue Mar 31 2020 20:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53004 * 109.47066 * 2 1 4 4 H 1.09005 * 109.46827 * 304.99765 * 3 2 1 5 5 N 1.46495 * 109.47123 * 64.99829 * 3 2 1 6 6 C 1.34773 * 120.00044 * 275.00147 * 5 3 2 7 7 C 1.50707 * 120.00048 * 180.02562 * 6 5 3 8 8 O 1.21278 * 120.00513 * 359.97438 * 6 5 3 9 9 C 1.50700 * 109.46694 * 184.99940 * 3 2 1 10 10 O 1.21277 * 119.99574 * 239.99454 * 9 3 2 11 11 N 1.34776 * 120.00321 * 60.00485 * 9 3 2 12 12 C 1.48195 * 127.79614 * 0.02562 * 11 9 3 13 13 C 1.54504 * 104.62742 * 140.68465 * 12 11 9 14 14 C 1.53834 * 104.78812 * 23.81220 * 13 12 11 15 15 C 1.48254 * 127.80091 * 179.97438 * 11 9 3 16 16 C 1.52485 * 110.21134 * 118.75182 * 14 13 12 17 17 C 1.53127 * 109.60351 * 61.98992 * 16 14 13 18 18 C 1.53198 * 109.28196 * 60.51079 * 17 16 14 19 19 N 1.46920 * 108.89463 * 304.92606 * 18 17 16 20 20 C 1.36938 * 120.67826 * 234.03212 * 19 18 17 21 21 H 1.08001 * 119.99857 * 152.60675 * 20 19 18 22 22 C 1.38812 * 119.99810 * 332.60427 * 20 19 18 23 23 N 1.31622 * 119.99843 * 159.32153 * 22 20 19 24 24 Si 1.86798 * 120.00476 * 339.31993 * 22 20 19 25 25 H 1.48502 * 109.47088 * 93.15291 * 24 22 20 26 26 H 1.48493 * 109.47472 * 213.15638 * 24 22 20 27 27 H 1.48507 * 109.46829 * 333.15506 * 24 22 20 28 28 C 1.47036 * 118.64525 * 54.01695 * 19 18 17 29 29 H 1.08994 * 109.46900 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47095 * 300.00281 * 1 2 3 31 31 H 1.09004 * 109.46593 * 60.00219 * 1 2 3 32 32 H 1.09000 * 109.47095 * 239.99719 * 2 1 3 33 33 H 1.08997 * 109.46890 * 119.99539 * 2 1 3 34 34 H 0.97000 * 119.99869 * 95.00183 * 5 3 2 35 35 H 1.08997 * 109.46966 * 359.97438 * 7 6 5 36 36 H 1.08995 * 109.47373 * 119.99868 * 7 6 5 37 37 H 1.09007 * 109.46659 * 239.99830 * 7 6 5 38 38 H 1.08993 * 110.40833 * 21.88977 * 12 11 9 39 39 H 1.09002 * 110.49815 * 259.51724 * 12 11 9 40 40 H 1.08995 * 110.37203 * 264.98383 * 13 12 11 41 41 H 1.08998 * 110.37289 * 142.64028 * 13 12 11 42 42 H 1.08998 * 110.42549 * 100.39074 * 15 11 9 43 43 H 1.09000 * 110.42092 * 337.91330 * 15 11 9 44 44 H 1.08994 * 109.45240 * 182.03713 * 16 14 13 45 45 H 1.09009 * 109.44698 * 301.98183 * 16 14 13 46 46 H 1.08999 * 109.50696 * 180.45420 * 17 16 14 47 47 H 1.08997 * 109.50613 * 300.53255 * 17 16 14 48 48 H 1.08997 * 109.56473 * 64.75675 * 18 17 16 49 49 H 1.09006 * 109.56320 * 184.98739 * 18 17 16 50 50 H 0.96998 * 120.00536 * 180.02562 * 23 22 20 51 51 H 1.09001 * 109.58749 * 187.43932 * 28 19 18 52 52 H 1.09005 * 109.58474 * 67.02481 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 7 1.6525 2.0975 1.2517 6 6 0.4352 2.6644 1.3669 7 6 0.0367 3.3387 2.6544 8 8 -0.3392 2.6327 0.4341 9 6 3.5420 1.4442 -0.1238 10 8 4.2216 1.9435 0.7477 11 7 4.1299 0.8911 -1.2031 12 6 3.4733 0.2398 -2.3611 13 6 4.2988 0.6957 -3.5849 14 6 5.6806 1.0575 -3.0138 15 6 5.5793 0.7978 -1.5005 16 6 6.7548 0.1682 -3.6304 17 6 6.8088 0.4012 -5.1429 18 6 7.1552 1.8682 -5.4167 19 7 6.1869 2.7241 -4.7180 20 6 5.4841 3.6830 -5.3975 21 1 4.5121 3.9928 -5.0431 22 6 6.0209 4.2566 -6.5418 23 7 5.2323 4.8506 -7.4123 24 14 7.8625 4.1859 -6.8464 25 1 8.1819 2.9953 -7.6746 26 1 8.2940 5.4150 -7.5593 27 1 8.5758 4.0910 -5.5473 28 6 5.9876 2.5299 -3.2742 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.2720 2.1232 1.9977 35 1 0.8553 3.2672 3.3705 36 1 -0.1868 4.3878 2.4611 37 1 -0.8469 2.8482 3.0630 38 1 2.4409 0.5773 -2.4519 39 1 3.5103 -0.8449 -2.2604 40 1 3.8394 1.5686 -4.0487 41 1 4.3872 -0.1162 -4.3068 42 1 5.9537 -0.1971 -1.2596 43 1 6.1309 1.5573 -0.9465 44 1 7.7225 0.4101 -3.1911 45 1 6.5178 -0.8773 -3.4329 46 1 7.5716 -0.2411 -5.5831 47 1 5.8389 0.1677 -5.5820 48 1 8.1601 2.0802 -5.0516 49 1 7.1082 2.0604 -6.4886 50 1 5.6073 5.2512 -8.2122 51 1 5.1526 3.1428 -2.9348 52 1 6.8935 2.8144 -2.7388 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733289966.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:11 Heat of formation + Delta-G solvation = -45.088871 kcal Electronic energy + Delta-G solvation = -31362.369592 eV Core-core repulsion = 27362.482274 eV Total energy + Delta-G solvation = -3999.887318 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.84397 -39.81773 -38.54738 -36.16233 -35.52914 -33.33222 -32.71201 -31.16595 -30.87687 -29.94961 -29.52181 -27.69319 -25.53422 -25.20214 -23.43472 -22.14886 -21.91698 -21.29984 -20.64574 -19.64523 -18.38487 -17.48373 -16.82399 -16.71542 -16.28592 -15.99968 -15.65233 -15.37707 -15.09219 -14.39506 -14.27574 -14.12087 -13.91792 -13.74500 -13.53348 -13.38696 -12.98191 -12.85265 -12.81614 -12.68568 -12.39726 -12.30588 -12.18874 -12.03903 -11.94195 -11.70436 -11.51127 -11.48068 -11.08151 -10.84105 -10.71479 -10.57211 -10.39823 -10.07337 -10.06216 -9.95448 -9.83238 -9.67420 -9.44610 -9.25899 -8.79943 -8.58769 -6.98342 -5.95832 -3.31626 2.39092 2.49412 2.62689 3.20597 3.30619 3.48093 3.50884 4.18574 4.52019 4.59545 4.65437 4.71157 4.76573 4.81132 4.93913 5.02837 5.07204 5.16076 5.16934 5.20950 5.30639 5.34383 5.40855 5.48212 5.54678 5.56878 5.59588 5.67355 5.74518 5.76298 5.86744 5.88526 5.94824 5.98908 6.03966 6.15908 6.21594 6.23257 6.32242 6.37333 6.49191 6.55072 6.63080 6.67738 6.75328 6.92458 7.30541 7.45814 7.94502 7.96156 8.04849 8.31241 8.92799 9.71122 10.08765 11.20090 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015704 B = 0.003119 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.552743 B = 8975.662648 C = 9678.531840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.133 4.133 3 C 0.130 3.870 4 H 0.116 0.884 5 N -0.711 5.711 6 C 0.512 3.488 7 C -0.170 4.170 8 O -0.541 6.541 9 C 0.533 3.467 10 O -0.543 6.543 11 N -0.612 5.612 12 C 0.094 3.906 13 C -0.116 4.116 14 C -0.088 4.088 15 C 0.116 3.884 16 C -0.094 4.094 17 C -0.135 4.135 18 C 0.124 3.876 19 N -0.602 5.602 20 C -0.258 4.258 21 H 0.084 0.916 22 C 0.024 3.976 23 N -0.908 5.908 24 Si 0.883 3.117 25 H -0.289 1.289 26 H -0.304 1.304 27 H -0.271 1.271 28 C 0.166 3.834 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.409 0.591 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.083 0.917 44 H 0.058 0.942 45 H 0.054 0.946 46 H 0.053 0.947 47 H 0.067 0.933 48 H 0.023 0.977 49 H 0.071 0.929 50 H 0.262 0.738 51 H 0.061 0.939 52 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.639 -12.984 17.200 22.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.172 4.172 3 C 0.021 3.979 4 H 0.133 0.867 5 N -0.366 5.366 6 C 0.300 3.700 7 C -0.229 4.229 8 O -0.418 6.418 9 C 0.321 3.679 10 O -0.421 6.421 11 N -0.345 5.345 12 C -0.029 4.029 13 C -0.154 4.154 14 C -0.090 4.090 15 C -0.006 4.006 16 C -0.132 4.132 17 C -0.175 4.175 18 C -0.001 4.001 19 N -0.325 5.325 20 C -0.386 4.386 21 H 0.102 0.898 22 C -0.175 4.175 23 N -0.551 5.551 24 Si 0.714 3.286 25 H -0.217 1.217 26 H -0.233 1.233 27 H -0.196 1.196 28 C 0.039 3.961 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.246 0.754 35 H 0.095 0.905 36 H 0.115 0.885 37 H 0.112 0.888 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.107 0.893 41 H 0.097 0.903 42 H 0.088 0.912 43 H 0.101 0.899 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.072 0.928 47 H 0.086 0.914 48 H 0.041 0.959 49 H 0.089 0.911 50 H 0.072 0.928 51 H 0.079 0.921 52 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -5.918 -12.549 16.943 21.899 hybrid contribution 1.468 0.044 -0.049 1.470 sum -4.449 -12.505 16.894 21.485 Atomic orbital electron populations 1.21795 0.93927 1.00933 1.03339 1.22026 0.97830 0.94059 1.03296 1.20790 0.91357 0.95731 0.90008 0.86678 1.45875 1.17109 1.57656 1.15958 1.20769 0.81090 0.77804 0.90358 1.21836 1.03514 1.02668 0.94907 1.90749 1.51244 1.58931 1.40892 1.20101 0.89631 0.77399 0.80779 1.90687 1.65278 1.46118 1.40034 1.48887 1.08724 1.56922 1.19969 1.22703 0.97776 0.97001 0.85382 1.22544 0.94290 1.02868 0.95662 1.21627 0.95655 0.99363 0.92377 1.22412 0.80754 1.01650 0.95797 1.21354 0.97864 0.97619 0.96395 1.22055 1.01636 0.98620 0.95156 1.21325 0.92089 0.89142 0.97545 1.44328 1.47452 1.37927 1.02810 1.18878 0.98810 1.14014 1.06933 0.89811 1.25263 0.97412 0.97764 0.97021 1.69834 1.34289 1.40559 1.10407 0.86953 0.88199 0.75693 0.77793 1.21696 1.23273 1.19625 1.20863 0.98575 0.91155 0.85471 0.93120 0.92455 0.91731 0.89984 0.91424 0.75400 0.90503 0.88542 0.88753 0.90192 0.90977 0.89279 0.90343 0.91177 0.89883 0.92355 0.92716 0.92784 0.91422 0.95907 0.91056 0.92783 0.92051 0.96035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.52 37.16 0.32 -1.09 16 2 C -0.13 -1.26 5.38 -26.72 -0.14 -1.40 16 3 C 0.13 1.49 2.00 -69.08 -0.14 1.36 16 4 H 0.12 1.50 7.38 -51.93 -0.38 1.12 16 5 N -0.71 -7.48 4.90 -54.93 -0.27 -7.75 16 6 C 0.51 5.53 6.51 -10.98 -0.07 5.45 16 7 C -0.17 -1.13 10.39 36.01 0.37 -0.76 16 8 O -0.54 -7.76 14.24 5.56 0.08 -7.68 16 9 C 0.53 7.21 7.33 -10.99 -0.08 7.13 16 10 O -0.54 -8.78 16.11 5.56 0.09 -8.69 16 11 N -0.61 -7.76 3.31 -169.43 -0.56 -8.32 16 12 C 0.09 1.03 5.21 -2.32 -0.01 1.01 16 13 C -0.12 -1.59 5.58 -25.51 -0.14 -1.74 16 14 C -0.09 -1.28 0.68 -154.07 -0.11 -1.39 16 15 C 0.12 1.52 6.13 -2.62 -0.02 1.50 16 16 C -0.09 -1.29 4.44 -26.93 -0.12 -1.41 16 17 C -0.14 -2.18 5.87 -26.56 -0.16 -2.34 16 18 C 0.12 2.60 4.19 -3.71 -0.02 2.58 16 19 N -0.60 -13.68 2.56 -172.56 -0.44 -14.12 16 20 C -0.26 -7.03 10.04 -15.06 -0.15 -7.19 16 21 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 22 C 0.02 0.69 5.23 -17.43 -0.09 0.60 16 23 N -0.91 -27.62 13.97 55.49 0.78 -26.84 16 24 Si 0.88 22.26 24.36 -169.99 -4.14 18.12 16 25 H -0.29 -7.00 6.63 56.52 0.37 -6.63 16 26 H -0.30 -7.88 7.11 56.52 0.40 -7.47 16 27 H -0.27 -6.75 6.63 56.52 0.37 -6.38 16 28 C 0.17 3.17 4.86 -3.93 -0.02 3.15 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.62 5.65 -51.93 -0.29 0.32 16 31 H 0.06 0.73 7.85 -51.93 -0.41 0.32 16 32 H 0.08 0.70 5.27 -51.93 -0.27 0.42 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.41 3.86 7.63 -40.82 -0.31 3.55 16 35 H 0.08 0.36 7.91 -51.93 -0.41 -0.05 16 36 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.82 6.66 -51.93 -0.35 0.47 16 39 H 0.07 0.63 7.94 -51.93 -0.41 0.22 16 40 H 0.09 1.53 7.65 -51.93 -0.40 1.14 16 41 H 0.08 1.01 6.51 -51.93 -0.34 0.68 16 42 H 0.07 0.79 7.83 -51.93 -0.41 0.38 16 43 H 0.08 1.20 7.55 -51.93 -0.39 0.81 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.05 0.62 8.13 -51.92 -0.42 0.20 16 46 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 47 H 0.07 1.11 6.61 -51.93 -0.34 0.77 16 48 H 0.02 0.48 7.10 -51.93 -0.37 0.11 16 49 H 0.07 1.65 4.47 -51.93 -0.23 1.42 16 50 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 51 H 0.06 1.26 7.92 -51.93 -0.41 0.85 16 52 H 0.02 0.42 8.09 -51.93 -0.42 0.00 16 LS Contribution 385.53 15.07 5.81 5.81 Total: -1.00 -33.30 385.53 -7.95 -41.25 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -8.72 Total: 2.75 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -0.57 Total: 5.48 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: -0.50 Total: -57.04 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: 0.17 Total: -16.38 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.14 Total: 18.12 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.30 -7.95 -41.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733289966.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.840 kcal (2) G-P(sol) polarization free energy of solvation -33.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds