Wall clock time and date at job start Tue Mar 31 2020 20:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53004 * 109.47066 * 2 1 4 4 H 1.09005 * 109.46827 * 304.99765 * 3 2 1 5 5 N 1.46495 * 109.47123 * 64.99829 * 3 2 1 6 6 C 1.34773 * 120.00044 * 275.00147 * 5 3 2 7 7 C 1.50707 * 120.00048 * 180.02562 * 6 5 3 8 8 O 1.21278 * 120.00513 * 359.97438 * 6 5 3 9 9 C 1.50700 * 109.46694 * 184.99940 * 3 2 1 10 10 O 1.21277 * 119.99574 * 239.99454 * 9 3 2 11 11 N 1.34776 * 120.00321 * 60.00485 * 9 3 2 12 12 C 1.48195 * 127.79614 * 0.02562 * 11 9 3 13 13 C 1.54504 * 104.62742 * 140.68465 * 12 11 9 14 14 C 1.53834 * 104.78812 * 23.81220 * 13 12 11 15 15 C 1.48254 * 127.80091 * 179.97438 * 11 9 3 16 16 C 1.52485 * 110.21134 * 118.75182 * 14 13 12 17 17 C 1.53127 * 109.60351 * 61.98992 * 16 14 13 18 18 C 1.53198 * 109.28196 * 60.51079 * 17 16 14 19 19 N 1.46920 * 108.89463 * 304.92606 * 18 17 16 20 20 C 1.36938 * 120.67826 * 234.03212 * 19 18 17 21 21 H 1.08001 * 119.99857 * 152.60675 * 20 19 18 22 22 C 1.38812 * 119.99810 * 332.60427 * 20 19 18 23 23 N 1.31622 * 119.99843 * 159.32153 * 22 20 19 24 24 Si 1.86798 * 120.00476 * 339.31993 * 22 20 19 25 25 H 1.48502 * 109.47088 * 93.15291 * 24 22 20 26 26 H 1.48493 * 109.47472 * 213.15638 * 24 22 20 27 27 H 1.48507 * 109.46829 * 333.15506 * 24 22 20 28 28 C 1.47036 * 118.64525 * 54.01695 * 19 18 17 29 29 H 1.08994 * 109.46900 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47095 * 300.00281 * 1 2 3 31 31 H 1.09004 * 109.46593 * 60.00219 * 1 2 3 32 32 H 1.09000 * 109.47095 * 239.99719 * 2 1 3 33 33 H 1.08997 * 109.46890 * 119.99539 * 2 1 3 34 34 H 0.97000 * 119.99869 * 95.00183 * 5 3 2 35 35 H 1.08997 * 109.46966 * 359.97438 * 7 6 5 36 36 H 1.08995 * 109.47373 * 119.99868 * 7 6 5 37 37 H 1.09007 * 109.46659 * 239.99830 * 7 6 5 38 38 H 1.08993 * 110.40833 * 21.88977 * 12 11 9 39 39 H 1.09002 * 110.49815 * 259.51724 * 12 11 9 40 40 H 1.08995 * 110.37203 * 264.98383 * 13 12 11 41 41 H 1.08998 * 110.37289 * 142.64028 * 13 12 11 42 42 H 1.08998 * 110.42549 * 100.39074 * 15 11 9 43 43 H 1.09000 * 110.42092 * 337.91330 * 15 11 9 44 44 H 1.08994 * 109.45240 * 182.03713 * 16 14 13 45 45 H 1.09009 * 109.44698 * 301.98183 * 16 14 13 46 46 H 1.08999 * 109.50696 * 180.45420 * 17 16 14 47 47 H 1.08997 * 109.50613 * 300.53255 * 17 16 14 48 48 H 1.08997 * 109.56473 * 64.75675 * 18 17 16 49 49 H 1.09006 * 109.56320 * 184.98739 * 18 17 16 50 50 H 0.96998 * 120.00536 * 180.02562 * 23 22 20 51 51 H 1.09001 * 109.58749 * 187.43932 * 28 19 18 52 52 H 1.09005 * 109.58474 * 67.02481 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 7 1.6525 2.0975 1.2517 6 6 0.4352 2.6644 1.3669 7 6 0.0367 3.3387 2.6544 8 8 -0.3392 2.6327 0.4341 9 6 3.5420 1.4442 -0.1238 10 8 4.2216 1.9435 0.7477 11 7 4.1299 0.8911 -1.2031 12 6 3.4733 0.2398 -2.3611 13 6 4.2988 0.6957 -3.5849 14 6 5.6806 1.0575 -3.0138 15 6 5.5793 0.7978 -1.5005 16 6 6.7548 0.1682 -3.6304 17 6 6.8088 0.4012 -5.1429 18 6 7.1552 1.8682 -5.4167 19 7 6.1869 2.7241 -4.7180 20 6 5.4841 3.6830 -5.3975 21 1 4.5121 3.9928 -5.0431 22 6 6.0209 4.2566 -6.5418 23 7 5.2323 4.8506 -7.4123 24 14 7.8625 4.1859 -6.8464 25 1 8.1819 2.9953 -7.6746 26 1 8.2940 5.4150 -7.5593 27 1 8.5758 4.0910 -5.5473 28 6 5.9876 2.5299 -3.2742 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.2720 2.1232 1.9977 35 1 0.8553 3.2672 3.3705 36 1 -0.1868 4.3878 2.4611 37 1 -0.8469 2.8482 3.0630 38 1 2.4409 0.5773 -2.4519 39 1 3.5103 -0.8449 -2.2604 40 1 3.8394 1.5686 -4.0487 41 1 4.3872 -0.1162 -4.3068 42 1 5.9537 -0.1971 -1.2596 43 1 6.1309 1.5573 -0.9465 44 1 7.7225 0.4101 -3.1911 45 1 6.5178 -0.8773 -3.4329 46 1 7.5716 -0.2411 -5.5831 47 1 5.8389 0.1677 -5.5820 48 1 8.1601 2.0802 -5.0516 49 1 7.1082 2.0604 -6.4886 50 1 5.6073 5.2512 -8.2122 51 1 5.1526 3.1428 -2.9348 52 1 6.8935 2.8144 -2.7388 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733289966.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:10 Heat of formation + Delta-G solvation = -68.983655 kcal Electronic energy + Delta-G solvation = -31363.405748 eV Core-core repulsion = 27362.482274 eV Total energy + Delta-G solvation = -4000.923474 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.87674 -40.87193 -39.71777 -37.55877 -36.46996 -34.91277 -33.72440 -32.87069 -32.33536 -30.65713 -30.58578 -28.71036 -27.27784 -26.43444 -24.50291 -23.67553 -22.87854 -22.77122 -21.53976 -20.65796 -19.63600 -18.74212 -18.43785 -17.73312 -17.34061 -17.19845 -16.99376 -16.60540 -16.04104 -15.79950 -15.60330 -15.34372 -15.26861 -15.00796 -14.59191 -14.49358 -14.32998 -14.15255 -13.78608 -13.68302 -13.67224 -13.36965 -13.32732 -13.11888 -13.01393 -12.91488 -12.86465 -12.52133 -12.44224 -12.20476 -12.12423 -11.92982 -11.74636 -11.53562 -11.50752 -11.20697 -11.15948 -11.00803 -10.93843 -10.66373 -10.16897 -9.79220 -8.91448 -8.17928 -5.48793 1.26888 1.38969 1.39447 1.48202 1.56429 1.71863 2.34634 2.39521 3.03857 3.19723 3.32030 3.67925 3.75039 3.79835 3.82531 3.92637 3.99868 4.17704 4.25298 4.28719 4.35197 4.42316 4.45012 4.46865 4.53322 4.63093 4.65112 4.65466 4.77698 4.80008 4.84087 4.84894 4.87408 4.96654 4.99460 5.03581 5.07162 5.09959 5.11233 5.17994 5.30515 5.34935 5.36407 5.42301 5.51542 5.62164 5.84876 6.10663 6.42566 6.49895 6.91239 6.92093 7.20529 7.61893 8.01976 9.02340 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015704 B = 0.003119 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.552743 B = 8975.662648 C = 9678.531840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.124 4.124 3 C 0.132 3.868 4 H 0.094 0.906 5 N -0.709 5.709 6 C 0.506 3.494 7 C -0.163 4.163 8 O -0.583 6.583 9 C 0.531 3.469 10 O -0.574 6.574 11 N -0.614 5.614 12 C 0.100 3.900 13 C -0.113 4.113 14 C -0.081 4.081 15 C 0.122 3.878 16 C -0.088 4.088 17 C -0.128 4.128 18 C 0.115 3.885 19 N -0.614 5.614 20 C -0.242 4.242 21 H 0.043 0.957 22 C -0.035 4.035 23 N -0.958 5.958 24 Si 0.949 3.051 25 H -0.270 1.270 26 H -0.315 1.315 27 H -0.265 1.265 28 C 0.165 3.835 29 H 0.069 0.931 30 H 0.045 0.955 31 H 0.044 0.956 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.415 0.585 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.109 0.891 38 H 0.083 0.917 39 H 0.114 0.886 40 H 0.041 0.959 41 H 0.095 0.905 42 H 0.107 0.893 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.097 0.903 46 H 0.084 0.916 47 H 0.062 0.938 48 H 0.028 0.972 49 H 0.045 0.955 50 H 0.261 0.739 51 H 0.031 0.969 52 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.237 -16.703 19.050 25.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.162 4.162 3 C 0.023 3.977 4 H 0.111 0.889 5 N -0.363 5.363 6 C 0.296 3.704 7 C -0.222 4.222 8 O -0.463 6.463 9 C 0.319 3.681 10 O -0.454 6.454 11 N -0.346 5.346 12 C -0.021 4.021 13 C -0.151 4.151 14 C -0.083 4.083 15 C -0.001 4.001 16 C -0.126 4.126 17 C -0.167 4.167 18 C -0.009 4.009 19 N -0.338 5.338 20 C -0.372 4.372 21 H 0.061 0.939 22 C -0.230 4.230 23 N -0.605 5.605 24 Si 0.779 3.221 25 H -0.196 1.196 26 H -0.244 1.244 27 H -0.190 1.190 28 C 0.040 3.960 29 H 0.088 0.912 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.114 0.886 33 H 0.098 0.902 34 H 0.254 0.746 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.127 0.873 38 H 0.101 0.899 39 H 0.132 0.868 40 H 0.060 0.940 41 H 0.114 0.886 42 H 0.125 0.875 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.116 0.884 46 H 0.102 0.898 47 H 0.080 0.920 48 H 0.046 0.954 49 H 0.064 0.936 50 H 0.070 0.930 51 H 0.049 0.951 52 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -4.486 -16.321 18.828 25.318 hybrid contribution 0.970 1.263 -0.591 1.698 sum -3.516 -15.058 18.237 23.910 Atomic orbital electron populations 1.21720 0.94286 1.01596 1.01841 1.21989 0.97282 0.92440 1.04525 1.20753 0.89930 0.97130 0.89870 0.88867 1.45933 1.17238 1.57401 1.15736 1.21539 0.80524 0.77163 0.91216 1.21874 1.04964 1.02315 0.93076 1.90732 1.52360 1.60536 1.42678 1.20404 0.90214 0.76804 0.80648 1.90666 1.66041 1.47387 1.41302 1.48966 1.08967 1.56617 1.20046 1.22821 0.97178 0.99010 0.83130 1.22448 0.94024 1.01547 0.97120 1.21486 0.96737 0.95955 0.94121 1.22398 0.80842 1.03010 0.93818 1.21370 0.97595 0.99528 0.94106 1.21968 1.02239 0.95058 0.97415 1.21441 0.91605 0.92116 0.95746 1.44400 1.47505 1.37620 1.04250 1.18759 0.97551 1.14326 1.06565 0.93889 1.25883 1.01515 0.98382 0.97184 1.69970 1.36124 1.43026 1.11364 0.85875 0.82669 0.75726 0.77876 1.19644 1.24392 1.19007 1.20945 0.97308 0.94506 0.83270 0.91222 0.93554 0.93715 0.88562 0.90199 0.74642 0.88198 0.88244 0.87255 0.89904 0.86799 0.94003 0.88621 0.87503 0.91705 0.91549 0.88423 0.89785 0.91960 0.95435 0.93642 0.93014 0.95064 0.96064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 8.52 71.98 0.61 -1.95 16 2 C -0.12 -2.09 5.38 30.60 0.16 -1.92 16 3 C 0.13 2.99 2.00 44.25 0.09 3.08 16 4 H 0.09 2.55 7.38 -2.38 -0.02 2.53 16 5 N -0.71 -14.61 4.90 -446.09 -2.19 -16.80 16 6 C 0.51 10.85 6.51 87.66 0.57 11.42 16 7 C -0.16 -1.96 10.39 71.24 0.74 -1.22 16 8 O -0.58 -17.22 14.24 -3.02 -0.04 -17.26 16 9 C 0.53 13.89 7.33 87.66 0.64 14.53 16 10 O -0.57 -18.23 16.11 -3.02 -0.05 -18.28 16 11 N -0.61 -14.40 3.31 -808.34 -2.68 -17.07 16 12 C 0.10 1.92 5.21 86.56 0.45 2.37 16 13 C -0.11 -2.96 5.58 31.39 0.18 -2.78 16 14 C -0.08 -2.19 0.68 -51.90 -0.04 -2.22 16 15 C 0.12 2.83 6.13 86.34 0.53 3.36 16 16 C -0.09 -2.00 4.44 30.47 0.14 -1.87 16 17 C -0.13 -3.67 5.87 30.70 0.18 -3.49 16 18 C 0.12 4.65 4.19 86.37 0.36 5.01 16 19 N -0.61 -28.33 2.56 -699.87 -1.79 -30.12 16 20 C -0.24 -13.87 10.04 84.03 0.84 -13.03 16 21 H 0.04 2.75 8.06 -2.91 -0.02 2.73 16 22 C -0.04 -2.07 5.23 84.86 0.44 -1.63 16 23 N -0.96 -61.06 13.97 21.65 0.30 -60.76 16 24 Si 0.95 47.15 24.36 68.60 1.67 48.82 16 25 H -0.27 -12.45 6.63 99.48 0.66 -11.79 16 26 H -0.31 -16.03 7.11 99.48 0.71 -15.33 16 27 H -0.27 -12.73 6.63 99.48 0.66 -12.07 16 28 C 0.16 6.39 4.86 86.16 0.42 6.81 16 29 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.05 0.97 5.65 -2.39 -0.01 0.95 16 31 H 0.04 1.01 7.85 -2.39 -0.02 0.99 16 32 H 0.10 1.33 5.27 -2.39 -0.01 1.32 16 33 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.42 7.49 7.63 -92.71 -0.71 6.78 16 35 H 0.10 0.73 7.91 -2.39 -0.02 0.71 16 36 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.11 1.02 8.14 -2.38 -0.02 1.00 16 38 H 0.08 1.57 6.66 -2.39 -0.02 1.56 16 39 H 0.11 1.37 7.94 -2.39 -0.02 1.35 16 40 H 0.04 1.49 7.65 -2.39 -0.02 1.47 16 41 H 0.10 2.18 6.51 -2.39 -0.02 2.16 16 42 H 0.11 1.80 7.83 -2.39 -0.02 1.79 16 43 H 0.06 1.78 7.55 -2.39 -0.02 1.76 16 44 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.10 1.52 8.13 -2.38 -0.02 1.50 16 46 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 47 H 0.06 1.87 6.61 -2.39 -0.02 1.85 16 48 H 0.03 1.09 7.10 -2.39 -0.02 1.07 16 49 H 0.05 2.06 4.47 -2.38 -0.01 2.05 16 50 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 51 H 0.03 1.36 7.92 -2.39 -0.02 1.34 16 52 H 0.02 0.83 8.09 -2.38 -0.02 0.81 16 Total: -1.00 -78.39 385.53 1.67 -76.72 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: 0.12 Total: 18.29 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: 6.32 Total: 16.47 kcal Atomic # 7 Polarization: -118.40 SS G_CDS: -6.35 Total: -124.75 kcal Atomic # 8 Polarization: -35.45 SS G_CDS: -0.09 Total: -35.54 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 1.67 Total: 48.82 kcal Total: -78.39 1.67 -76.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733289966.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.736 kcal (2) G-P(sol) polarization free energy of solvation -78.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds