Wall clock time and date at job start Tue Mar 31 2020 19:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32989 * 119.99985 * 2 1 4 4 C 1.47101 * 120.00335 * 172.79712 * 3 2 1 5 5 O 1.21621 * 119.99463 * 352.73780 * 4 3 2 6 6 N 1.34775 * 120.00261 * 172.74029 * 4 3 2 7 7 C 1.46501 * 119.99998 * 0.02562 * 6 4 3 8 8 C 1.46505 * 120.00112 * 179.97438 * 6 4 3 9 9 C 1.52998 * 109.47244 * 270.00262 * 8 6 4 10 10 C 1.52997 * 109.47053 * 179.97438 * 9 8 6 11 11 N 1.46903 * 109.47459 * 179.97438 * 10 9 8 12 12 C 1.46903 * 110.99441 * 66.04448 * 11 10 9 13 13 C 1.46892 * 111.00115 * 189.99886 * 11 10 9 14 14 C 1.50700 * 109.46880 * 169.99917 * 13 11 10 15 15 O 1.21291 * 120.00150 * 0.02562 * 14 13 11 16 16 N 1.34778 * 120.00022 * 179.97438 * 14 13 11 17 17 C 1.37102 * 120.00161 * 180.02562 * 16 14 13 18 18 H 1.07996 * 119.99765 * 0.02562 * 17 16 14 19 19 C 1.38952 * 120.00032 * 180.02562 * 17 16 14 20 20 N 1.31416 * 119.99788 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99808 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47075 * 89.99729 * 21 19 17 23 23 H 1.48495 * 109.47143 * 209.99700 * 21 19 17 24 24 H 1.48498 * 109.47123 * 329.99942 * 21 19 17 25 25 C 1.50700 * 119.99937 * 179.97438 * 2 1 3 26 26 C 1.52997 * 117.50013 * 359.97438 * 25 2 1 27 27 C 1.53002 * 117.50109 * 291.33341 * 25 2 1 28 28 H 1.08995 * 109.47101 * 90.00176 * 1 2 3 29 29 H 1.09004 * 109.46857 * 210.00165 * 1 2 3 30 30 H 1.08993 * 109.47476 * 329.99556 * 1 2 3 31 31 H 1.08008 * 119.99946 * 352.79575 * 3 2 1 32 32 H 1.09000 * 109.46852 * 269.99726 * 7 6 4 33 33 H 1.08999 * 109.47258 * 29.99754 * 7 6 4 34 34 H 1.08994 * 109.47158 * 150.00061 * 7 6 4 35 35 H 1.09008 * 109.46823 * 30.00215 * 8 6 4 36 36 H 1.08998 * 109.46947 * 149.99930 * 8 6 4 37 37 H 1.08996 * 109.46834 * 299.99723 * 9 8 6 38 38 H 1.08998 * 109.47420 * 59.99958 * 9 8 6 39 39 H 1.08999 * 109.46970 * 300.00124 * 10 9 8 40 40 H 1.09007 * 109.47162 * 59.99830 * 10 9 8 41 41 H 1.09000 * 109.47064 * 60.00831 * 12 11 10 42 42 H 1.09001 * 109.46359 * 180.02562 * 12 11 10 43 43 H 1.08996 * 109.47463 * 299.99948 * 12 11 10 44 44 H 1.09001 * 109.47473 * 289.99819 * 13 11 10 45 45 H 1.09001 * 109.47033 * 50.00426 * 13 11 10 46 46 H 0.97002 * 119.99743 * 0.02562 * 16 14 13 47 47 H 0.97001 * 119.99068 * 179.97438 * 20 19 17 48 48 H 1.09005 * 115.54551 * 145.67009 * 25 2 1 49 49 H 1.08995 * 117.49877 * 0.02562 * 26 25 2 50 50 H 1.09004 * 117.49705 * 145.02036 * 26 25 2 51 51 H 1.08995 * 117.49745 * 214.97959 * 27 25 2 52 52 H 1.09002 * 117.49404 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1517 0.0000 4 6 3.6342 1.1568 0.1597 5 8 4.2207 0.1245 0.4234 6 7 4.3241 2.3055 0.0140 7 6 3.6175 3.5491 -0.3030 8 6 5.7804 2.3106 0.1736 9 6 6.1321 2.5843 1.6373 10 6 7.6529 2.5890 1.8040 11 7 7.9907 2.8524 3.2093 12 6 7.5478 1.7495 4.0727 13 6 9.4300 3.0994 3.3673 14 6 9.7031 3.6035 4.7611 15 8 8.7886 3.7427 5.5456 16 7 10.9635 3.8986 5.1361 17 6 11.2120 4.3566 6.4042 18 1 10.3978 4.4806 7.1027 19 6 12.5115 4.6613 6.7906 20 7 13.5023 4.5100 5.9407 21 14 12.8499 5.2861 8.5182 22 1 13.1170 4.1349 9.4175 23 1 14.0333 6.1829 8.4973 24 1 11.6683 6.0371 9.0133 25 6 2.2605 -1.3051 0.0006 26 6 1.4384 -2.5955 0.0018 27 6 2.1862 -2.1633 1.2651 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8899 0.5139 31 1 1.6383 2.0834 -0.1173 32 1 3.5523 3.6642 -1.3849 33 1 2.6136 3.5145 0.1200 34 1 4.1612 4.3937 0.1201 35 1 6.1817 1.3409 -0.1213 36 1 6.2121 3.0890 -0.4555 37 1 5.7308 3.5539 1.9321 38 1 5.7004 1.8059 2.2664 39 1 8.0538 1.6193 1.5092 40 1 8.0850 3.3673 1.1749 41 1 8.0374 0.8263 3.7627 42 1 7.8099 1.9705 5.1073 43 1 6.4673 1.6337 3.9887 44 1 9.9782 2.1718 3.2026 45 1 9.7524 3.8459 2.6414 46 1 11.6949 3.7868 4.5087 47 1 14.4094 4.7231 6.2105 48 1 3.1989 -1.3064 -0.5541 49 1 0.3526 -2.5004 0.0017 50 1 1.8360 -3.4460 -0.5521 51 1 3.0754 -2.7294 1.5421 52 1 1.5926 -1.7836 2.0968 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733768969.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:31 Heat of formation + Delta-G solvation = -17.439230 kcal Electronic energy + Delta-G solvation = -28689.808086 eV Core-core repulsion = 24691.119747 eV Total energy + Delta-G solvation = -3998.688340 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.29802 -38.63124 -38.13809 -36.75314 -35.66061 -33.89899 -33.74988 -32.02842 -31.18468 -28.65767 -27.81904 -27.27299 -26.11294 -24.84481 -23.73148 -22.67883 -22.47314 -20.70872 -20.12341 -19.07956 -18.40900 -17.79100 -17.48195 -16.58334 -16.08075 -15.76214 -15.44601 -15.29851 -14.87836 -14.63511 -14.50985 -14.19089 -13.93691 -13.68253 -13.46418 -13.41474 -13.30025 -13.15851 -13.09397 -12.64413 -12.52133 -12.17358 -11.96012 -11.93032 -11.80342 -11.57924 -11.52523 -11.41395 -11.18575 -11.10957 -11.03972 -10.86673 -10.59694 -10.47645 -10.36341 -10.18229 -9.68638 -9.43782 -9.23934 -8.77904 -8.37827 -7.93054 -7.76953 -6.38031 -3.78558 1.03016 2.82645 3.06201 3.20279 3.28540 3.34729 3.70175 3.95798 4.07512 4.21276 4.29186 4.32195 4.61613 4.73480 4.79996 4.84376 4.89001 4.96554 5.07349 5.10290 5.12649 5.17700 5.23583 5.29404 5.31049 5.32628 5.39874 5.41503 5.47512 5.61491 5.64968 5.70589 5.80575 5.83582 5.86493 5.91744 6.00221 6.05643 6.07252 6.13758 6.22783 6.24430 6.34711 6.43117 6.67240 7.21864 7.37627 7.49275 7.58886 8.06884 8.10888 8.66579 9.22289 9.59141 10.11530 10.79851 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022697 B = 0.001696 C = 0.001649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.366756 B =16507.311493 C =16979.403439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.002 4.002 3 C -0.231 4.231 4 C 0.545 3.455 5 O -0.533 6.533 6 N -0.615 5.615 7 C 0.078 3.922 8 C 0.118 3.882 9 C -0.129 4.129 10 C 0.058 3.942 11 N -0.519 5.519 12 C 0.022 3.978 13 C 0.046 3.954 14 C 0.445 3.555 15 O -0.577 6.577 16 N -0.566 5.566 17 C -0.298 4.298 18 H 0.103 0.897 19 C 0.021 3.979 20 N -0.903 5.903 21 Si 0.930 3.070 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.270 1.270 25 C -0.118 4.118 26 C -0.191 4.191 27 C -0.153 4.153 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.130 0.870 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.031 0.969 40 H 0.072 0.928 41 H 0.013 0.987 42 H 0.094 0.906 43 H 0.060 0.940 44 H 0.047 0.953 45 H 0.087 0.913 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.130 0.870 49 H 0.095 0.905 50 H 0.095 0.905 51 H 0.097 0.903 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.394 -7.872 -18.360 30.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.004 4.004 3 C -0.251 4.251 4 C 0.336 3.664 5 O -0.411 6.411 6 N -0.347 5.347 7 C -0.065 4.065 8 C -0.005 4.005 9 C -0.167 4.167 10 C -0.071 4.071 11 N -0.243 5.243 12 C -0.125 4.125 13 C -0.086 4.086 14 C 0.231 3.769 15 O -0.461 6.461 16 N -0.203 5.203 17 C -0.427 4.427 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.544 5.544 21 Si 0.757 3.243 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.194 1.194 25 C -0.136 4.136 26 C -0.228 4.228 27 C -0.190 4.190 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.147 0.853 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.049 0.951 40 H 0.090 0.910 41 H 0.032 0.968 42 H 0.112 0.888 43 H 0.079 0.921 44 H 0.065 0.935 45 H 0.105 0.895 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.147 0.853 49 H 0.113 0.887 50 H 0.113 0.887 51 H 0.116 0.884 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -23.729 -7.830 -17.516 30.516 hybrid contribution 1.220 -0.195 0.149 1.245 sum -22.509 -8.025 -17.367 29.541 Atomic orbital electron populations 1.21025 0.91109 1.03421 1.03014 1.21839 0.95222 0.93405 0.89892 1.22447 0.93551 0.98655 1.10487 1.18551 0.87837 0.82985 0.76992 1.90769 1.71061 1.31338 1.47981 1.47743 1.07690 1.08603 1.70710 1.21838 0.97779 0.86354 1.00579 1.21443 0.79153 1.03072 0.96846 1.21907 0.95906 1.03046 0.95887 1.22034 0.95376 0.99571 0.90093 1.61565 1.14860 1.42551 1.05278 1.22546 0.99793 0.90085 1.00123 1.21862 0.88507 1.00308 0.97900 1.19766 0.83721 0.84633 0.88826 1.90480 1.43823 1.57737 1.54078 1.41873 1.06538 1.57948 1.13918 1.19699 0.93866 1.39768 0.89387 0.87947 1.25255 0.95157 0.97822 0.99788 1.69620 1.00182 1.49128 1.35498 0.85860 0.77978 0.78636 0.81818 1.20473 1.20958 1.19441 1.21394 1.00451 0.88041 1.03673 1.23152 0.98832 0.98390 1.02377 1.22808 1.02548 1.02347 0.91290 0.90250 0.90676 0.90901 0.85253 0.92647 0.90924 0.90715 0.89961 0.90546 0.90991 0.91331 0.95084 0.90973 0.96844 0.88777 0.92141 0.93544 0.89470 0.77510 0.91942 0.85252 0.88650 0.88664 0.88406 0.89033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.66 9.53 36.01 0.34 -0.32 16 2 C 0.00 -0.01 5.80 -101.17 -0.59 -0.60 16 3 C -0.23 -2.00 8.84 -37.81 -0.33 -2.33 16 4 C 0.54 6.23 7.52 -12.67 -0.10 6.13 16 5 O -0.53 -7.69 12.98 5.26 0.07 -7.62 16 6 N -0.61 -6.01 2.87 -182.97 -0.53 -6.53 16 7 C 0.08 0.49 10.20 59.85 0.61 1.10 16 8 C 0.12 1.21 5.41 -4.04 -0.02 1.19 16 9 C -0.13 -1.59 5.46 -26.73 -0.15 -1.74 16 10 C 0.06 0.79 4.96 -3.82 -0.02 0.77 16 11 N -0.52 -9.21 4.50 -244.37 -1.10 -10.31 16 12 C 0.02 0.40 8.96 60.07 0.54 0.94 16 13 C 0.05 0.86 5.45 -4.98 -0.03 0.83 16 14 C 0.45 10.82 7.48 -10.98 -0.08 10.74 16 15 O -0.58 -15.94 13.91 5.55 0.08 -15.87 16 16 N -0.57 -14.66 5.29 -10.96 -0.06 -14.71 16 17 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 16 18 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 19 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 20 N -0.90 -24.88 13.05 55.50 0.72 -24.15 16 21 Si 0.93 21.35 29.55 -169.99 -5.02 16.32 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 25 C -0.12 -1.12 4.25 -91.77 -0.39 -1.51 16 26 C -0.19 -1.40 9.80 -26.72 -0.26 -1.66 16 27 C -0.15 -1.39 10.24 -26.71 -0.27 -1.67 16 28 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.35 6.30 -51.93 -0.33 0.03 16 30 H 0.07 0.31 8.07 -51.93 -0.42 -0.11 16 31 H 0.13 0.78 6.16 -52.48 -0.32 0.46 16 32 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.37 6.02 -51.93 -0.31 0.06 16 34 H 0.07 0.44 8.07 -51.93 -0.42 0.03 16 35 H 0.08 0.95 7.42 -51.92 -0.39 0.56 16 36 H 0.08 0.63 8.07 -51.93 -0.42 0.21 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.07 0.99 6.55 -51.93 -0.34 0.65 16 39 H 0.03 0.41 8.12 -51.93 -0.42 -0.01 16 40 H 0.07 0.88 7.93 -51.93 -0.41 0.46 16 41 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 42 H 0.09 2.00 5.82 -51.93 -0.30 1.69 16 43 H 0.06 1.00 6.47 -51.93 -0.34 0.67 16 44 H 0.05 0.81 8.12 -51.93 -0.42 0.39 16 45 H 0.09 1.46 7.93 -51.93 -0.41 1.05 16 46 H 0.39 9.70 7.90 -40.82 -0.32 9.37 16 47 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 48 H 0.13 1.51 6.40 -51.93 -0.33 1.18 16 49 H 0.10 0.55 6.27 -51.93 -0.33 0.23 16 50 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 51 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 52 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 416.64 15.07 6.28 6.28 Total: -1.00 -33.79 416.64 -9.25 -43.04 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -8.70 Total: 9.78 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: -0.99 Total: 3.77 kcal Atomic # 7 Polarization: -54.75 SS G_CDS: -0.96 Total: -55.71 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: 0.15 Total: -23.49 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -33.79 -9.25 -43.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733768969.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.602 kcal (2) G-P(sol) polarization free energy of solvation -33.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds