Wall clock time and date at job start Tue Mar 31 2020 19:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32989 * 119.99985 * 2 1 4 4 C 1.47101 * 120.00335 * 172.79712 * 3 2 1 5 5 O 1.21621 * 119.99463 * 352.73780 * 4 3 2 6 6 N 1.34775 * 120.00261 * 172.74029 * 4 3 2 7 7 C 1.46501 * 119.99998 * 0.02562 * 6 4 3 8 8 C 1.46505 * 120.00112 * 179.97438 * 6 4 3 9 9 C 1.52998 * 109.47244 * 270.00262 * 8 6 4 10 10 C 1.52997 * 109.47053 * 179.97438 * 9 8 6 11 11 N 1.46903 * 109.47459 * 179.97438 * 10 9 8 12 12 C 1.46903 * 110.99441 * 66.04448 * 11 10 9 13 13 C 1.46892 * 111.00115 * 189.99886 * 11 10 9 14 14 C 1.50700 * 109.46880 * 169.99917 * 13 11 10 15 15 O 1.21291 * 120.00150 * 0.02562 * 14 13 11 16 16 N 1.34778 * 120.00022 * 179.97438 * 14 13 11 17 17 C 1.37102 * 120.00161 * 180.02562 * 16 14 13 18 18 H 1.07996 * 119.99765 * 0.02562 * 17 16 14 19 19 C 1.38952 * 120.00032 * 180.02562 * 17 16 14 20 20 N 1.31416 * 119.99788 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99808 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47075 * 89.99729 * 21 19 17 23 23 H 1.48495 * 109.47143 * 209.99700 * 21 19 17 24 24 H 1.48498 * 109.47123 * 329.99942 * 21 19 17 25 25 C 1.50700 * 119.99937 * 179.97438 * 2 1 3 26 26 C 1.52997 * 117.50013 * 359.97438 * 25 2 1 27 27 C 1.53002 * 117.50109 * 291.33341 * 25 2 1 28 28 H 1.08995 * 109.47101 * 90.00176 * 1 2 3 29 29 H 1.09004 * 109.46857 * 210.00165 * 1 2 3 30 30 H 1.08993 * 109.47476 * 329.99556 * 1 2 3 31 31 H 1.08008 * 119.99946 * 352.79575 * 3 2 1 32 32 H 1.09000 * 109.46852 * 269.99726 * 7 6 4 33 33 H 1.08999 * 109.47258 * 29.99754 * 7 6 4 34 34 H 1.08994 * 109.47158 * 150.00061 * 7 6 4 35 35 H 1.09008 * 109.46823 * 30.00215 * 8 6 4 36 36 H 1.08998 * 109.46947 * 149.99930 * 8 6 4 37 37 H 1.08996 * 109.46834 * 299.99723 * 9 8 6 38 38 H 1.08998 * 109.47420 * 59.99958 * 9 8 6 39 39 H 1.08999 * 109.46970 * 300.00124 * 10 9 8 40 40 H 1.09007 * 109.47162 * 59.99830 * 10 9 8 41 41 H 1.09000 * 109.47064 * 60.00831 * 12 11 10 42 42 H 1.09001 * 109.46359 * 180.02562 * 12 11 10 43 43 H 1.08996 * 109.47463 * 299.99948 * 12 11 10 44 44 H 1.09001 * 109.47473 * 289.99819 * 13 11 10 45 45 H 1.09001 * 109.47033 * 50.00426 * 13 11 10 46 46 H 0.97002 * 119.99743 * 0.02562 * 16 14 13 47 47 H 0.97001 * 119.99068 * 179.97438 * 20 19 17 48 48 H 1.09005 * 115.54551 * 145.67009 * 25 2 1 49 49 H 1.08995 * 117.49877 * 0.02562 * 26 25 2 50 50 H 1.09004 * 117.49705 * 145.02036 * 26 25 2 51 51 H 1.08995 * 117.49745 * 214.97959 * 27 25 2 52 52 H 1.09002 * 117.49404 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1517 0.0000 4 6 3.6342 1.1568 0.1597 5 8 4.2207 0.1245 0.4234 6 7 4.3241 2.3055 0.0140 7 6 3.6175 3.5491 -0.3030 8 6 5.7804 2.3106 0.1736 9 6 6.1321 2.5843 1.6373 10 6 7.6529 2.5890 1.8040 11 7 7.9907 2.8524 3.2093 12 6 7.5478 1.7495 4.0727 13 6 9.4300 3.0994 3.3673 14 6 9.7031 3.6035 4.7611 15 8 8.7886 3.7427 5.5456 16 7 10.9635 3.8986 5.1361 17 6 11.2120 4.3566 6.4042 18 1 10.3978 4.4806 7.1027 19 6 12.5115 4.6613 6.7906 20 7 13.5023 4.5100 5.9407 21 14 12.8499 5.2861 8.5182 22 1 13.1170 4.1349 9.4175 23 1 14.0333 6.1829 8.4973 24 1 11.6683 6.0371 9.0133 25 6 2.2605 -1.3051 0.0006 26 6 1.4384 -2.5955 0.0018 27 6 2.1862 -2.1633 1.2651 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8899 0.5139 31 1 1.6383 2.0834 -0.1173 32 1 3.5523 3.6642 -1.3849 33 1 2.6136 3.5145 0.1200 34 1 4.1612 4.3937 0.1201 35 1 6.1817 1.3409 -0.1213 36 1 6.2121 3.0890 -0.4555 37 1 5.7308 3.5539 1.9321 38 1 5.7004 1.8059 2.2664 39 1 8.0538 1.6193 1.5092 40 1 8.0850 3.3673 1.1749 41 1 8.0374 0.8263 3.7627 42 1 7.8099 1.9705 5.1073 43 1 6.4673 1.6337 3.9887 44 1 9.9782 2.1718 3.2026 45 1 9.7524 3.8459 2.6414 46 1 11.6949 3.7868 4.5087 47 1 14.4094 4.7231 6.2105 48 1 3.1989 -1.3064 -0.5541 49 1 0.3526 -2.5004 0.0017 50 1 1.8360 -3.4460 -0.5521 51 1 3.0754 -2.7294 1.5421 52 1 1.5926 -1.7836 2.0968 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733768969.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:30 Heat of formation + Delta-G solvation = -39.575646 kcal Electronic energy + Delta-G solvation = -28690.767994 eV Core-core repulsion = 24691.119747 eV Total energy + Delta-G solvation = -3999.648247 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.08548 -40.38701 -38.89486 -38.13737 -36.61025 -35.87419 -34.45249 -33.31518 -32.99572 -29.60899 -29.03642 -28.08352 -27.18675 -26.48651 -24.79644 -23.62227 -23.17556 -21.89329 -21.04865 -20.79453 -19.85031 -19.09216 -18.21831 -17.85787 -17.24329 -16.72465 -16.68533 -16.52318 -16.44607 -15.88247 -15.78938 -15.41051 -15.21282 -14.97305 -14.70249 -14.37022 -14.02351 -13.96808 -13.79714 -13.75988 -13.49368 -13.19844 -13.17444 -13.09121 -12.98469 -12.85104 -12.64985 -12.54408 -12.46369 -12.40126 -12.28488 -12.18920 -12.11608 -11.68360 -11.54433 -11.46107 -11.25744 -10.50279 -10.29040 -10.00092 -9.92145 -9.49730 -9.23955 -8.46350 -5.94995 0.36992 1.37678 1.41182 1.54197 2.05324 2.10029 2.28433 2.29911 2.79543 3.03932 3.20197 3.41369 3.59092 3.70459 3.94140 4.03122 4.07870 4.11994 4.15699 4.22285 4.28852 4.35247 4.38370 4.44644 4.46015 4.51668 4.58119 4.58984 4.63345 4.70071 4.73180 4.75142 4.81102 4.82269 4.95002 4.97454 5.02233 5.07731 5.14926 5.20854 5.24655 5.29455 5.41240 5.44167 5.57621 5.69319 5.88167 6.05230 6.19684 6.49096 6.61243 7.13260 7.27573 7.56586 8.12850 8.71088 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022697 B = 0.001696 C = 0.001649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.366756 B =16507.311493 C =16979.403439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.000 4.000 3 C -0.243 4.243 4 C 0.531 3.469 5 O -0.576 6.576 6 N -0.616 5.616 7 C 0.072 3.928 8 C 0.123 3.877 9 C -0.116 4.116 10 C 0.061 3.939 11 N -0.536 5.536 12 C 0.031 3.969 13 C 0.057 3.943 14 C 0.441 3.559 15 O -0.615 6.615 16 N -0.574 5.574 17 C -0.333 4.333 18 H 0.078 0.922 19 C -0.014 4.014 20 N -0.920 5.920 21 Si 0.994 3.006 22 H -0.272 1.272 23 H -0.269 1.269 24 H -0.273 1.273 25 C -0.135 4.135 26 C -0.166 4.166 27 C -0.168 4.168 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.158 0.842 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.104 0.896 37 H 0.068 0.932 38 H 0.041 0.959 39 H 0.037 0.963 40 H 0.096 0.904 41 H 0.023 0.977 42 H 0.056 0.944 43 H 0.068 0.932 44 H 0.064 0.936 45 H 0.115 0.885 46 H 0.396 0.604 47 H 0.277 0.723 48 H 0.100 0.900 49 H 0.118 0.882 50 H 0.099 0.901 51 H 0.082 0.918 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.680 -7.100 -19.883 32.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.002 4.002 3 C -0.263 4.263 4 C 0.324 3.676 5 O -0.458 6.458 6 N -0.348 5.348 7 C -0.070 4.070 8 C -0.001 4.001 9 C -0.155 4.155 10 C -0.067 4.067 11 N -0.261 5.261 12 C -0.117 4.117 13 C -0.074 4.074 14 C 0.228 3.772 15 O -0.501 6.501 16 N -0.212 5.212 17 C -0.462 4.462 18 H 0.096 0.904 19 C -0.213 4.213 20 N -0.561 5.561 21 Si 0.817 3.183 22 H -0.197 1.197 23 H -0.194 1.194 24 H -0.198 1.198 25 C -0.153 4.153 26 C -0.203 4.203 27 C -0.205 4.205 28 H 0.114 0.886 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.176 0.824 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.122 0.878 37 H 0.087 0.913 38 H 0.060 0.940 39 H 0.055 0.945 40 H 0.114 0.886 41 H 0.041 0.959 42 H 0.075 0.925 43 H 0.087 0.913 44 H 0.082 0.918 45 H 0.133 0.867 46 H 0.230 0.770 47 H 0.087 0.913 48 H 0.118 0.882 49 H 0.137 0.863 50 H 0.118 0.882 51 H 0.101 0.899 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -25.016 -7.039 -19.082 32.240 hybrid contribution 1.601 -0.470 0.583 1.768 sum -23.414 -7.509 -18.499 30.770 Atomic orbital electron populations 1.21092 0.88439 1.04385 1.04315 1.22149 0.96961 0.92440 0.88603 1.22593 0.92020 1.00154 1.11564 1.19154 0.89151 0.82823 0.76463 1.90750 1.72070 1.32901 1.50074 1.47884 1.07554 1.09440 1.69907 1.22075 0.98220 0.84778 1.01916 1.21353 0.79984 1.03115 0.95612 1.21771 0.94960 1.01786 0.96967 1.22125 0.96169 1.00696 0.87723 1.61536 1.14161 1.42775 1.07594 1.22358 1.00434 0.90673 0.98227 1.21759 0.89626 1.01580 0.94437 1.20777 0.82630 0.83071 0.90695 1.90459 1.44828 1.58940 1.55921 1.41933 1.07351 1.58459 1.13433 1.19658 0.93974 1.42139 0.90474 0.90388 1.26042 0.94445 0.97288 1.03539 1.69679 1.00570 1.48922 1.36961 0.84922 0.77901 0.78302 0.77161 1.19734 1.19413 1.19821 1.21327 1.00345 0.89989 1.03636 1.23240 0.99784 0.97108 1.00162 1.22807 1.02726 1.02985 0.92002 0.88561 0.90059 0.89603 0.82423 0.90888 0.89541 0.90125 0.91577 0.87778 0.91284 0.94019 0.94504 0.88617 0.95860 0.92483 0.91333 0.91785 0.86718 0.77006 0.91317 0.88170 0.86344 0.88212 0.89915 0.88640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.95 9.53 71.24 0.68 -0.27 16 2 C 0.00 0.01 5.80 -17.62 -0.10 -0.10 16 3 C -0.24 -3.93 8.84 23.43 0.21 -3.72 16 4 C 0.53 12.19 7.52 86.57 0.65 12.84 16 5 O -0.58 -17.56 12.98 -4.10 -0.05 -17.61 16 6 N -0.62 -11.44 2.87 -851.05 -2.45 -13.89 16 7 C 0.07 0.74 10.20 127.77 1.30 2.05 16 8 C 0.12 2.39 5.41 86.38 0.47 2.86 16 9 C -0.12 -2.80 5.46 30.59 0.17 -2.63 16 10 C 0.06 1.56 4.96 86.30 0.43 1.98 16 11 N -0.54 -18.72 4.50 -927.05 -4.17 -22.89 16 12 C 0.03 1.14 8.96 127.69 1.14 2.29 16 13 C 0.06 2.08 5.45 85.56 0.47 2.55 16 14 C 0.44 21.77 7.48 87.66 0.66 22.43 16 15 O -0.62 -35.14 13.91 -3.06 -0.04 -35.19 16 16 N -0.57 -30.25 5.29 -306.98 -1.62 -31.88 16 17 C -0.33 -19.30 9.68 84.04 0.81 -18.49 16 18 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 19 C -0.01 -0.73 5.50 84.93 0.47 -0.27 16 20 N -0.92 -50.32 13.05 21.66 0.28 -50.04 16 21 Si 0.99 43.65 29.55 68.60 2.03 45.68 16 22 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 23 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 24 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 25 C -0.13 -2.61 4.25 -11.54 -0.05 -2.66 16 26 C -0.17 -2.28 9.80 30.60 0.30 -1.98 16 27 C -0.17 -3.16 10.24 30.61 0.31 -2.85 16 28 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.08 0.53 6.30 -2.39 -0.02 0.51 16 30 H 0.09 0.46 8.07 -2.39 -0.02 0.44 16 31 H 0.16 1.50 6.16 -2.91 -0.02 1.48 16 32 H 0.07 0.52 8.14 -2.39 -0.02 0.51 16 33 H 0.09 0.65 6.02 -2.39 -0.01 0.64 16 34 H 0.08 0.76 8.07 -2.39 -0.02 0.74 16 35 H 0.07 1.52 7.42 -2.38 -0.02 1.50 16 36 H 0.10 1.45 8.07 -2.39 -0.02 1.43 16 37 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.04 1.23 6.55 -2.39 -0.02 1.21 16 39 H 0.04 0.92 8.12 -2.39 -0.02 0.90 16 40 H 0.10 2.03 7.93 -2.38 -0.02 2.01 16 41 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.06 2.52 5.82 -2.39 -0.01 2.51 16 43 H 0.07 2.35 6.47 -2.39 -0.02 2.33 16 44 H 0.06 2.14 8.12 -2.39 -0.02 2.12 16 45 H 0.11 3.58 7.93 -2.39 -0.02 3.56 16 46 H 0.40 19.76 7.90 -92.71 -0.73 19.03 16 47 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 48 H 0.10 2.54 6.40 -2.38 -0.02 2.52 16 49 H 0.12 1.07 6.27 -2.39 -0.01 1.05 16 50 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 51 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 52 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -76.35 416.64 2.07 -74.28 By element: Atomic # 1 Polarization: 37.28 SS G_CDS: 0.19 Total: 37.47 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: 7.91 Total: 14.05 kcal Atomic # 7 Polarization: -110.73 SS G_CDS: -7.96 Total: -118.69 kcal Atomic # 8 Polarization: -52.70 SS G_CDS: -0.10 Total: -52.79 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -76.35 2.07 -74.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733768969.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.707 kcal (2) G-P(sol) polarization free energy of solvation -76.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds