Wall clock time and date at job start Tue Mar 31 2020 19:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47217 * 2 1 4 4 C 1.50702 * 109.47108 * 120.00049 * 2 1 3 5 5 O 1.21289 * 119.99864 * 359.97438 * 4 2 1 6 6 N 1.34774 * 120.00103 * 179.97438 * 4 2 1 7 7 C 1.46501 * 119.99859 * 179.97438 * 6 4 2 8 8 C 1.53003 * 115.55859 * 180.10589 * 7 6 4 9 9 C 1.53125 * 109.52298 * 159.18515 * 8 7 6 10 10 C 1.53037 * 109.27715 * 182.50435 * 9 8 7 11 11 N 1.46842 * 109.57735 * 59.08424 * 10 9 8 12 12 C 1.46895 * 111.00398 * 174.19039 * 11 10 9 13 13 C 1.50697 * 109.47581 * 294.21244 * 12 11 10 14 14 O 1.21293 * 119.99459 * 359.97438 * 13 12 11 15 15 N 1.34771 * 120.00366 * 179.97438 * 13 12 11 16 16 C 1.37103 * 119.99887 * 179.97438 * 15 13 12 17 17 H 1.07999 * 120.00075 * 0.02562 * 16 15 13 18 18 C 1.38954 * 119.99575 * 180.02562 * 16 15 13 19 19 N 1.31404 * 120.00131 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99713 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46955 * 89.99931 * 20 18 16 22 22 H 1.48495 * 109.47063 * 209.99662 * 20 18 16 23 23 H 1.48505 * 109.46924 * 330.00016 * 20 18 16 24 24 C 1.46847 * 111.19954 * 298.29139 * 11 10 9 25 25 C 1.53046 * 109.52134 * 61.73667 * 24 11 10 26 26 C 1.53000 * 117.50040 * 34.42091 * 7 6 4 27 27 C 1.53002 * 60.02940 * 252.49639 * 26 7 6 28 28 H 1.09000 * 109.47024 * 300.00220 * 1 2 3 29 29 H 1.08994 * 109.47221 * 60.00049 * 1 2 3 30 30 H 1.08999 * 109.47401 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47534 * 239.99751 * 2 1 3 32 32 H 1.08994 * 109.46985 * 300.00096 * 3 2 1 33 33 H 1.09000 * 109.47303 * 59.99951 * 3 2 1 34 34 H 1.09006 * 109.47252 * 179.97438 * 3 2 1 35 35 H 0.97000 * 120.00496 * 359.97438 * 6 4 2 36 36 H 1.08997 * 109.52443 * 279.30912 * 8 7 6 37 37 H 1.09006 * 109.50329 * 302.38424 * 9 8 7 38 38 H 1.09008 * 109.50227 * 62.49987 * 9 8 7 39 39 H 1.09001 * 109.40929 * 299.07058 * 10 9 8 40 40 H 1.09000 * 109.46236 * 179.13273 * 10 9 8 41 41 H 1.09006 * 109.46601 * 54.20864 * 12 11 10 42 42 H 1.08998 * 109.47451 * 174.20840 * 12 11 10 43 43 H 0.97003 * 120.00152 * 0.02562 * 15 13 12 44 44 H 0.97008 * 119.99993 * 179.97438 * 19 18 16 45 45 H 1.08998 * 109.46225 * 301.72965 * 24 11 10 46 46 H 1.08992 * 109.46708 * 181.75314 * 24 11 10 47 47 H 1.08998 * 109.49863 * 180.87668 * 25 24 11 48 48 H 1.09003 * 109.49935 * 60.77013 * 25 24 11 49 49 H 1.09002 * 117.49833 * 359.97438 * 26 7 6 50 50 H 1.09002 * 117.49953 * 144.99785 * 26 7 6 51 51 H 1.09000 * 117.49996 * 107.50493 * 27 26 7 52 52 H 1.08999 * 117.49664 * 252.51862 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.2441 -1.1710 2.0291 6 7 3.3573 -0.8340 1.4435 7 6 3.8456 -1.5242 2.6400 8 6 5.3670 -1.6037 2.7815 9 6 5.7321 -1.8571 4.2468 10 6 7.2554 -1.8733 4.3925 11 7 7.8061 -0.5873 3.9462 12 6 9.2512 -0.5167 4.2005 13 6 9.5008 -0.5234 5.6866 14 8 8.5666 -0.5808 6.4581 15 7 10.7619 -0.4656 6.1584 16 6 10.9888 -0.4711 7.5105 17 1 10.1571 -0.5222 8.1975 18 6 12.2890 -0.4109 7.9969 19 7 13.3011 -0.3492 7.1611 20 14 12.5983 -0.4192 9.8392 21 1 12.7518 -1.8196 10.3090 22 1 13.8387 0.3413 10.1363 23 1 11.4503 0.2139 10.5367 24 6 7.5088 -0.3455 2.5286 25 6 5.9929 -0.2821 2.3277 26 6 3.0252 -2.7075 3.1573 27 6 3.0230 -1.3829 3.9231 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.6766 1.9562 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 3.1300 1.4425 0.0005 35 1 3.9877 -0.4661 0.8047 36 1 5.7481 -2.4179 2.1652 37 1 5.3165 -1.0635 4.8679 38 1 5.3251 -2.8178 4.5624 39 1 7.6690 -2.6767 3.7828 40 1 7.5186 -2.0382 5.4373 41 1 9.7425 -1.3769 3.7457 42 1 9.6517 0.4006 3.7689 43 1 11.5090 -0.4193 5.5414 44 1 14.2088 -0.3069 7.5007 45 1 7.9211 -1.1560 1.9277 46 1 7.9559 0.5992 2.2197 47 1 5.7723 -0.1182 1.2729 48 1 5.5816 0.5370 2.9176 49 1 2.1219 -2.9722 2.6077 50 1 3.5693 -3.5428 3.5982 51 1 2.1184 -0.7765 3.8771 52 1 3.5659 -1.3467 4.8675 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734603450.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:26 Heat of formation + Delta-G solvation = -48.171649 kcal Electronic energy + Delta-G solvation = -29982.992545 eV Core-core repulsion = 25982.971548 eV Total energy + Delta-G solvation = -4000.020998 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.92989 -39.29919 -38.06627 -36.61492 -34.85652 -33.93205 -33.11671 -32.46592 -31.21274 -30.52019 -27.64677 -27.44204 -25.13696 -24.31612 -23.17009 -22.90617 -22.44466 -20.60698 -20.02226 -19.17585 -19.08818 -17.86646 -17.77644 -16.25431 -15.90783 -15.69596 -15.44730 -15.07333 -14.71387 -14.61970 -14.39623 -14.15218 -13.97922 -13.83845 -13.69736 -13.46674 -13.26853 -13.03199 -12.83420 -12.61980 -12.29699 -12.25913 -11.88162 -11.62391 -11.57001 -11.55119 -11.47124 -11.44073 -11.32308 -11.08313 -10.99849 -10.74985 -10.52901 -10.39732 -10.28876 -10.21283 -10.07084 -9.68824 -9.45415 -8.72275 -8.41517 -7.96658 -7.81665 -6.41137 -3.81732 2.35506 2.82681 3.18109 3.26819 3.32815 3.84407 3.91223 3.99451 4.23406 4.26274 4.45243 4.46708 4.56737 4.62736 4.82664 4.91922 5.02681 5.08455 5.16507 5.20877 5.22425 5.27132 5.31443 5.37138 5.45051 5.48320 5.53504 5.55257 5.60807 5.66421 5.74331 5.74461 5.76059 5.83321 5.88670 5.89714 6.00704 6.04691 6.06615 6.20479 6.29034 6.31262 6.41265 6.48782 6.54813 7.27617 7.32679 7.45719 7.55927 8.00711 8.07490 8.62795 9.19048 9.55565 10.07469 10.76619 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.027850 B = 0.002016 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.130955 B =13882.595663 C =14308.540345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.116 4.116 3 C -0.145 4.145 4 C 0.514 3.486 5 O -0.533 6.533 6 N -0.694 5.694 7 C 0.101 3.899 8 C -0.051 4.051 9 C -0.106 4.106 10 C 0.053 3.947 11 N -0.514 5.514 12 C 0.046 3.954 13 C 0.444 3.556 14 O -0.576 6.576 15 N -0.565 5.565 16 C -0.298 4.298 17 H 0.103 0.897 18 C 0.021 3.979 19 N -0.902 5.902 20 Si 0.929 3.071 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.269 1.269 24 C 0.055 3.945 25 C -0.106 4.106 26 C -0.177 4.177 27 C -0.176 4.176 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.095 0.905 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.402 0.598 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.020 0.980 40 H 0.106 0.894 41 H 0.046 0.954 42 H 0.088 0.912 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.029 0.971 46 H 0.074 0.926 47 H 0.058 0.942 48 H 0.077 0.923 49 H 0.105 0.895 50 H 0.093 0.907 51 H 0.104 0.896 52 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.745 -0.195 -18.635 25.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.137 4.137 3 C -0.203 4.203 4 C 0.301 3.699 5 O -0.410 6.410 6 N -0.344 5.344 7 C 0.014 3.986 8 C -0.070 4.070 9 C -0.144 4.144 10 C -0.074 4.074 11 N -0.239 5.239 12 C -0.085 4.085 13 C 0.229 3.771 14 O -0.461 6.461 15 N -0.202 5.202 16 C -0.427 4.427 17 H 0.121 0.879 18 C -0.180 4.180 19 N -0.544 5.544 20 Si 0.757 3.243 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.194 1.194 24 C -0.073 4.073 25 C -0.144 4.144 26 C -0.216 4.216 27 C -0.214 4.214 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.113 0.887 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.238 0.762 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.085 0.915 39 H 0.038 0.962 40 H 0.124 0.876 41 H 0.064 0.936 42 H 0.106 0.894 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.047 0.953 46 H 0.093 0.907 47 H 0.077 0.923 48 H 0.096 0.904 49 H 0.123 0.877 50 H 0.111 0.889 51 H 0.123 0.877 52 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -18.959 -0.170 -17.241 25.627 hybrid contribution 1.547 -0.424 -0.416 1.657 sum -17.412 -0.593 -17.656 24.805 Atomic orbital electron populations 1.21599 0.92407 1.02803 1.02133 1.21327 0.98475 0.97340 0.96553 1.21800 1.01250 0.94136 1.03089 1.20718 0.81987 0.79503 0.87692 1.90670 1.55587 1.48173 1.46547 1.45409 1.06910 1.57878 1.24185 1.20779 0.92007 0.99661 0.86136 1.20814 0.89283 0.98305 0.98570 1.21717 0.96050 1.02242 0.94407 1.22255 0.93716 0.88288 1.03173 1.61489 1.12268 1.33659 1.16467 1.21832 0.88437 1.01525 0.96693 1.19753 0.83848 0.84368 0.89112 1.90485 1.42376 1.54946 1.58247 1.41876 1.05861 1.64371 1.08071 1.19695 0.93286 1.47329 0.82417 0.87917 1.25256 0.95082 0.97394 1.00262 1.69611 0.99237 1.50596 1.34942 0.85865 0.77888 0.78274 0.82314 1.20461 1.20954 1.19408 1.22082 0.95663 1.00598 0.88944 1.21562 0.95164 0.97789 0.99927 1.23393 1.02363 0.92072 1.03734 1.23572 1.02333 1.00376 0.95148 0.91868 0.92096 0.92001 0.88684 0.91349 0.91885 0.92104 0.76170 0.90818 0.90042 0.91514 0.96160 0.87638 0.93610 0.89420 0.77528 0.91916 0.95324 0.90746 0.92316 0.90439 0.87718 0.88898 0.87736 0.87860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.92 8.48 37.15 0.32 -0.61 16 2 C -0.12 -0.77 3.26 -91.78 -0.30 -1.07 16 3 C -0.15 -0.78 9.09 37.16 0.34 -0.44 16 4 C 0.51 5.07 6.86 -10.99 -0.08 4.99 16 5 O -0.53 -7.06 11.46 5.55 0.06 -6.99 16 6 N -0.69 -6.16 5.28 -47.57 -0.25 -6.41 16 7 C 0.10 1.08 2.99 -131.78 -0.39 0.68 16 8 C -0.05 -0.54 2.55 -90.50 -0.23 -0.77 16 9 C -0.11 -1.38 4.08 -26.65 -0.11 -1.48 16 10 C 0.05 0.84 5.10 -3.84 -0.02 0.82 16 11 N -0.51 -8.25 4.40 -236.12 -1.04 -9.29 16 12 C 0.05 0.81 5.45 -4.98 -0.03 0.79 16 13 C 0.44 10.31 7.46 -10.99 -0.08 10.23 16 14 O -0.58 -15.24 13.90 5.55 0.08 -15.16 16 15 N -0.57 -14.18 5.29 -10.96 -0.06 -14.24 16 16 C -0.30 -8.24 9.68 -14.93 -0.14 -8.39 16 17 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 18 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 19 N -0.90 -24.45 13.05 55.50 0.72 -23.73 16 20 Si 0.93 21.03 29.55 -169.99 -5.02 16.00 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 24 C 0.06 0.66 5.46 -3.83 -0.02 0.64 16 25 C -0.11 -1.08 4.94 -26.65 -0.13 -1.21 16 26 C -0.18 -2.05 9.08 -26.73 -0.24 -2.29 16 27 C -0.18 -2.15 8.85 -26.69 -0.24 -2.39 16 28 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 31 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.28 7.57 -51.93 -0.39 -0.11 16 35 H 0.40 2.63 6.33 -40.82 -0.26 2.37 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.08 1.18 6.58 -51.93 -0.34 0.84 16 38 H 0.07 0.80 7.10 -51.92 -0.37 0.43 16 39 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.11 2.06 5.78 -51.93 -0.30 1.76 16 41 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 42 H 0.09 1.39 7.99 -51.93 -0.41 0.97 16 43 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16 44 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 45 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.07 0.83 8.01 -51.93 -0.42 0.41 16 47 H 0.06 0.43 6.61 -51.93 -0.34 0.09 16 48 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 49 H 0.10 1.35 6.38 -51.93 -0.33 1.02 16 50 H 0.09 0.99 7.33 -51.93 -0.38 0.61 16 51 H 0.10 1.44 6.37 -51.93 -0.33 1.11 16 52 H 0.10 1.27 5.84 -51.93 -0.30 0.96 16 LS Contribution 397.79 15.07 5.99 5.99 Total: -1.00 -31.99 397.79 -9.63 -41.62 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: -8.66 Total: 12.21 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -1.46 Total: -0.01 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: -0.62 Total: -53.66 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: 0.14 Total: -22.16 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.99 -9.63 -41.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734603450.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.554 kcal (2) G-P(sol) polarization free energy of solvation -31.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds