Wall clock time and date at job start Tue Mar 31 2020 19:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47117 * 2 1 4 4 H 1.09006 * 115.54709 * 29.33361 * 3 2 1 5 5 C 1.53067 * 117.51772 * 243.61038 * 3 2 1 6 6 C 1.52998 * 59.98594 * 252.52153 * 5 3 2 7 7 H 1.08997 * 117.49889 * 107.49950 * 6 5 3 8 8 C 1.50697 * 117.49400 * 252.50028 * 6 5 3 9 9 O 1.21283 * 120.00521 * 68.47092 * 8 6 5 10 10 N 1.34784 * 119.99774 * 248.74198 * 8 6 5 11 11 C 1.46499 * 119.99893 * 179.72962 * 10 8 6 12 12 C 1.52998 * 109.46843 * 274.99901 * 11 10 8 13 13 C 1.53000 * 109.47154 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.47252 * 59.99728 * 13 12 11 15 15 N 1.46893 * 109.47349 * 180.02562 * 14 13 12 16 16 C 1.46902 * 111.00452 * 275.00094 * 15 14 13 17 17 C 1.50696 * 109.47802 * 179.97438 * 16 15 14 18 18 O 1.21297 * 119.99350 * 359.97438 * 17 16 15 19 19 N 1.34773 * 120.00106 * 180.02562 * 17 16 15 20 20 C 1.37104 * 119.99614 * 180.02562 * 19 17 16 21 21 H 1.07994 * 120.00022 * 359.97438 * 20 19 17 22 22 C 1.38956 * 119.99714 * 179.97438 * 20 19 17 23 23 N 1.31410 * 119.99583 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 120.00074 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47137 * 89.99525 * 24 22 20 26 26 H 1.48499 * 109.47059 * 209.99821 * 24 22 20 27 27 H 1.48499 * 109.47121 * 329.99527 * 24 22 20 28 28 C 1.53002 * 109.47269 * 300.00581 * 14 13 12 29 29 C 1.52997 * 109.46833 * 155.00334 * 11 10 8 30 30 H 1.08999 * 109.47443 * 299.99490 * 1 2 3 31 31 H 1.08996 * 109.47122 * 60.00306 * 1 2 3 32 32 H 1.09006 * 109.46798 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47443 * 240.00510 * 2 1 3 34 34 H 1.08999 * 109.47712 * 120.00135 * 2 1 3 35 35 H 1.09002 * 117.51520 * 145.03901 * 5 3 2 36 36 H 1.09003 * 117.49458 * 0.02562 * 5 3 2 37 37 H 0.97005 * 119.99846 * 359.72750 * 10 8 6 38 38 H 1.08990 * 109.47400 * 34.99963 * 11 10 8 39 39 H 1.09007 * 109.47248 * 300.00110 * 12 11 10 40 40 H 1.08997 * 109.47450 * 60.00399 * 12 11 10 41 41 H 1.09002 * 109.47232 * 300.00298 * 13 12 11 42 42 H 1.09002 * 109.47099 * 179.97438 * 13 12 11 43 43 H 1.09007 * 109.46950 * 60.00340 * 14 13 12 44 44 H 1.00906 * 111.00199 * 38.95539 * 15 14 13 45 45 H 1.08999 * 109.46943 * 300.00598 * 16 15 14 46 46 H 1.09005 * 109.46718 * 59.99899 * 16 15 14 47 47 H 0.96992 * 120.00364 * 359.97438 * 19 17 16 48 48 H 0.97007 * 119.99714 * 179.97438 * 23 22 20 49 49 H 1.08997 * 109.46559 * 299.99420 * 28 14 13 50 50 H 1.09005 * 109.47082 * 180.02562 * 28 14 13 51 51 H 1.09002 * 109.46979 * 299.99327 * 29 11 10 52 52 H 1.08995 * 109.47843 * 59.99844 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3883 2.1715 0.4818 5 6 2.8446 1.9082 -1.2160 6 6 3.5501 1.6580 0.1183 7 1 4.1803 0.7720 0.1960 8 6 4.0227 2.8618 0.8919 9 8 3.2156 3.6181 1.3894 10 7 5.3423 3.1011 1.0262 11 6 5.8016 4.2746 1.7731 12 6 5.8244 5.4920 0.8466 13 6 6.3048 6.7175 1.6265 14 6 7.7136 6.4596 2.1646 15 7 8.1746 7.6360 2.9139 16 6 8.7690 8.6336 2.0142 17 6 9.2286 9.8235 2.8168 18 8 9.0755 9.8390 4.0199 19 7 9.8087 10.8705 2.1976 20 6 10.2273 11.9528 2.9279 21 1 10.0917 11.9663 3.9992 22 6 10.8259 13.0321 2.2895 23 7 11.2266 14.0696 2.9895 24 14 11.0597 13.0089 0.4364 25 1 9.8666 13.6007 -0.2205 26 1 12.2646 13.8001 0.0796 27 1 11.2337 11.6076 -0.0231 28 6 7.6908 5.2422 3.0911 29 6 7.2104 4.0171 2.3115 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.7222 2.9434 -1.5344 36 1 3.0101 1.1867 -2.0162 37 1 5.9878 2.4962 0.6282 38 1 5.1236 4.4640 2.6052 39 1 6.5025 5.3026 0.0144 40 1 4.8208 5.6755 0.4630 41 1 5.6270 6.9070 2.4589 42 1 6.3214 7.5847 0.9663 43 1 8.3914 6.2701 1.3322 44 1 7.4229 8.0383 3.4537 45 1 9.6209 8.1935 1.4959 46 1 8.0253 8.9535 1.2843 47 1 9.9308 10.8582 1.2354 48 1 11.6448 14.8230 2.5439 49 1 7.0131 5.4318 3.9234 50 1 8.6945 5.0588 3.4748 51 1 7.1941 3.1498 2.9716 52 1 7.8885 3.8277 1.4795 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752852455.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:03 Heat of formation + Delta-G solvation = -70.277230 kcal Electronic energy + Delta-G solvation = -28473.280323 eV Core-core repulsion = 24472.300756 eV Total energy + Delta-G solvation = -4000.979567 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.60424 -39.19005 -38.26130 -37.32154 -35.43641 -33.98305 -33.09721 -32.44012 -31.63783 -30.99058 -29.03851 -26.34162 -24.84516 -24.17107 -23.53642 -22.93109 -21.59851 -20.92521 -20.64426 -20.04726 -19.31686 -18.32036 -17.62860 -16.70545 -16.24423 -15.55351 -15.42826 -15.24426 -14.86787 -14.84619 -14.75833 -14.58608 -14.29744 -14.11225 -13.59076 -13.21937 -13.11288 -13.00281 -12.89684 -12.83075 -12.58990 -12.48749 -12.32380 -12.09800 -11.83461 -11.78618 -11.51586 -11.44073 -11.35354 -11.31111 -11.15748 -10.76080 -10.65906 -10.58515 -10.53844 -10.51370 -10.04912 -9.96210 -9.55939 -9.33513 -8.56278 -8.17599 -8.07039 -6.29899 -3.81189 2.16317 2.73958 3.03185 3.07205 3.15448 3.36831 3.76163 4.04608 4.11101 4.15813 4.27474 4.31489 4.42302 4.53977 4.66576 4.71414 4.82942 4.85372 4.86748 4.95030 5.00191 5.06848 5.17590 5.18553 5.23348 5.27005 5.28470 5.33424 5.42881 5.51116 5.53739 5.56520 5.61178 5.66890 5.68103 5.75726 5.82535 5.84824 5.90727 5.94253 5.96588 5.99149 6.15521 6.22880 6.25862 7.16734 7.17708 7.59602 7.62602 7.92323 8.16223 8.61393 8.96501 9.43987 9.84652 10.83322 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.026988 B = 0.001612 C = 0.001571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.238511 B =17364.521651 C =17814.833467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.095 4.095 3 C -0.117 4.117 4 H 0.118 0.882 5 C -0.148 4.148 6 C -0.193 4.193 7 H 0.122 0.878 8 C 0.542 3.458 9 O -0.538 6.538 10 N -0.723 5.723 11 C 0.144 3.856 12 C -0.121 4.121 13 C -0.149 4.149 14 C 0.087 3.913 15 N -0.664 5.664 16 C 0.048 3.952 17 C 0.450 3.550 18 O -0.564 6.564 19 N -0.591 5.591 20 C -0.305 4.305 21 H 0.120 0.880 22 C 0.042 3.958 23 N -0.882 5.882 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.269 1.269 28 C -0.103 4.103 29 C -0.123 4.123 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.400 0.600 38 H 0.089 0.911 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.076 0.924 44 H 0.352 0.648 45 H 0.086 0.914 46 H 0.044 0.956 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.067 0.933 50 H 0.077 0.923 51 H 0.070 0.930 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.217 -30.289 -12.139 36.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.132 4.132 3 C -0.136 4.136 4 H 0.136 0.864 5 C -0.186 4.186 6 C -0.214 4.214 7 H 0.140 0.860 8 C 0.328 3.672 9 O -0.415 6.415 10 N -0.373 5.373 11 C 0.040 3.960 12 C -0.161 4.161 13 C -0.189 4.189 14 C -0.024 4.024 15 N -0.295 5.295 16 C -0.085 4.085 17 C 0.236 3.764 18 O -0.446 6.446 19 N -0.231 5.231 20 C -0.434 4.434 21 H 0.137 0.863 22 C -0.161 4.161 23 N -0.522 5.522 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.141 4.141 29 C -0.162 4.162 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.117 0.883 36 H 0.122 0.878 37 H 0.234 0.766 38 H 0.107 0.893 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.095 0.905 44 H 0.172 0.828 45 H 0.104 0.896 46 H 0.062 0.938 47 H 0.203 0.797 48 H 0.084 0.916 49 H 0.085 0.915 50 H 0.096 0.904 51 H 0.088 0.912 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.177 -29.761 -10.750 35.095 hybrid contribution -0.015 0.308 -2.213 2.234 sum -15.192 -29.453 -12.963 35.586 Atomic orbital electron populations 1.21743 0.95066 1.01725 1.02253 1.21158 0.96412 0.93529 1.02129 1.22506 0.91267 0.98822 1.01010 0.86373 1.23118 1.01985 1.03235 0.90251 1.22321 0.97930 0.98959 1.02238 0.85979 1.19684 0.82336 0.85479 0.79657 1.90715 1.53903 1.48624 1.48262 1.46044 1.06912 1.28219 1.56162 1.21074 0.96067 0.84439 0.94454 1.21822 1.01663 0.94338 0.98259 1.22294 0.98231 0.97756 1.00601 1.21648 0.93765 0.91431 0.95524 1.60180 1.37438 1.07320 1.24529 1.21734 0.99390 0.92820 0.94537 1.19743 0.83934 0.84120 0.88642 1.90568 1.59021 1.80662 1.14354 1.42210 1.55144 1.17224 1.08519 1.19444 1.35824 0.92849 0.95267 0.86284 1.25032 0.97235 0.95491 0.98371 1.69625 1.40016 1.06780 1.35764 0.86672 0.78940 0.78372 0.85407 1.19687 1.20173 1.19498 1.21417 1.02460 0.92343 0.97904 1.21795 0.94794 0.99154 1.00445 0.92417 0.92482 0.92559 0.91657 0.91398 0.88271 0.87770 0.76646 0.89318 0.91825 0.91680 0.91311 0.91611 0.90543 0.82845 0.89585 0.93815 0.79723 0.91639 0.91468 0.90385 0.91175 0.91373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.87 37.16 0.37 -0.35 16 2 C -0.09 -0.46 6.22 -26.73 -0.17 -0.63 16 3 C -0.12 -0.78 5.25 -90.58 -0.48 -1.26 16 4 H 0.12 1.03 7.60 -51.93 -0.39 0.63 16 5 C -0.15 -0.85 9.88 -26.70 -0.26 -1.11 16 6 C -0.19 -1.25 5.91 -91.77 -0.54 -1.79 16 7 H 0.12 0.52 8.14 -51.93 -0.42 0.10 16 8 C 0.54 5.12 7.58 -10.98 -0.08 5.04 16 9 O -0.54 -7.37 15.92 5.56 0.09 -7.28 16 10 N -0.72 -5.33 5.08 -53.81 -0.27 -5.61 16 11 C 0.14 1.26 2.46 -67.93 -0.17 1.09 16 12 C -0.12 -1.14 5.49 -26.73 -0.15 -1.29 16 13 C -0.15 -1.57 5.17 -26.73 -0.14 -1.71 16 14 C 0.09 0.97 2.47 -67.72 -0.17 0.81 16 15 N -0.66 -10.13 5.87 -107.99 -0.63 -10.77 16 16 C 0.05 0.79 5.97 -4.98 -0.03 0.76 16 17 C 0.45 10.29 7.82 -10.99 -0.09 10.21 16 18 O -0.56 -15.31 15.78 5.54 0.09 -15.23 16 19 N -0.59 -14.21 5.09 -10.96 -0.06 -14.26 16 20 C -0.31 -8.72 10.16 -14.93 -0.15 -8.87 16 21 H 0.12 3.89 7.39 -52.49 -0.39 3.50 16 22 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 23 N -0.88 -25.93 13.96 55.50 0.77 -25.16 16 24 Si 0.88 19.47 27.74 -169.99 -4.71 14.76 16 25 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 26 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.27 -5.43 6.52 56.52 0.37 -5.06 16 28 C -0.10 -1.01 5.53 -26.75 -0.15 -1.16 16 29 C -0.12 -0.92 5.39 -26.76 -0.14 -1.07 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.06 0.25 7.88 -51.93 -0.41 -0.15 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.10 0.40 8.03 -51.93 -0.42 -0.01 16 37 H 0.40 1.83 8.60 -40.82 -0.35 1.48 16 38 H 0.09 0.98 7.58 -51.93 -0.39 0.59 16 39 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 42 H 0.07 0.72 7.45 -51.93 -0.39 0.34 16 43 H 0.08 0.82 7.80 -51.92 -0.41 0.42 16 44 H 0.35 5.69 8.17 -39.29 -0.32 5.37 16 45 H 0.09 1.28 8.06 -51.93 -0.42 0.86 16 46 H 0.04 0.64 7.44 -51.93 -0.39 0.25 16 47 H 0.37 7.79 5.76 -40.82 -0.24 7.56 16 48 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 49 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 50 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 51 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 52 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 416.72 15.07 6.28 6.28 Total: -1.00 -34.60 416.72 -10.06 -44.65 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: -9.17 Total: 12.89 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -2.44 Total: -0.27 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: -0.19 Total: -55.80 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: 0.18 Total: -22.50 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -4.71 Total: 14.76 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -34.60 -10.06 -44.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752852455.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.623 kcal (2) G-P(sol) polarization free energy of solvation -34.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds