Wall clock time and date at job start Tue Mar 31 2020 19:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47117 * 2 1 4 4 H 1.09006 * 115.54709 * 29.33361 * 3 2 1 5 5 C 1.53067 * 117.51772 * 243.61038 * 3 2 1 6 6 C 1.52998 * 59.98594 * 252.52153 * 5 3 2 7 7 H 1.08997 * 117.49889 * 107.49950 * 6 5 3 8 8 C 1.50697 * 117.49400 * 252.50028 * 6 5 3 9 9 O 1.21283 * 120.00521 * 68.47092 * 8 6 5 10 10 N 1.34784 * 119.99774 * 248.74198 * 8 6 5 11 11 C 1.46499 * 119.99893 * 179.72962 * 10 8 6 12 12 C 1.52998 * 109.46843 * 274.99901 * 11 10 8 13 13 C 1.53000 * 109.47154 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.47252 * 59.99728 * 13 12 11 15 15 N 1.46893 * 109.47349 * 180.02562 * 14 13 12 16 16 C 1.46902 * 111.00452 * 275.00094 * 15 14 13 17 17 C 1.50696 * 109.47802 * 179.97438 * 16 15 14 18 18 O 1.21297 * 119.99350 * 359.97438 * 17 16 15 19 19 N 1.34773 * 120.00106 * 180.02562 * 17 16 15 20 20 C 1.37104 * 119.99614 * 180.02562 * 19 17 16 21 21 H 1.07994 * 120.00022 * 359.97438 * 20 19 17 22 22 C 1.38956 * 119.99714 * 179.97438 * 20 19 17 23 23 N 1.31410 * 119.99583 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 120.00074 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47137 * 89.99525 * 24 22 20 26 26 H 1.48499 * 109.47059 * 209.99821 * 24 22 20 27 27 H 1.48499 * 109.47121 * 329.99527 * 24 22 20 28 28 C 1.53002 * 109.47269 * 300.00581 * 14 13 12 29 29 C 1.52997 * 109.46833 * 155.00334 * 11 10 8 30 30 H 1.08999 * 109.47443 * 299.99490 * 1 2 3 31 31 H 1.08996 * 109.47122 * 60.00306 * 1 2 3 32 32 H 1.09006 * 109.46798 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47443 * 240.00510 * 2 1 3 34 34 H 1.08999 * 109.47712 * 120.00135 * 2 1 3 35 35 H 1.09002 * 117.51520 * 145.03901 * 5 3 2 36 36 H 1.09003 * 117.49458 * 0.02562 * 5 3 2 37 37 H 0.97005 * 119.99846 * 359.72750 * 10 8 6 38 38 H 1.08990 * 109.47400 * 34.99963 * 11 10 8 39 39 H 1.09007 * 109.47248 * 300.00110 * 12 11 10 40 40 H 1.08997 * 109.47450 * 60.00399 * 12 11 10 41 41 H 1.09002 * 109.47232 * 300.00298 * 13 12 11 42 42 H 1.09002 * 109.47099 * 179.97438 * 13 12 11 43 43 H 1.09007 * 109.46950 * 60.00340 * 14 13 12 44 44 H 1.00906 * 111.00199 * 38.95539 * 15 14 13 45 45 H 1.08999 * 109.46943 * 300.00598 * 16 15 14 46 46 H 1.09005 * 109.46718 * 59.99899 * 16 15 14 47 47 H 0.96992 * 120.00364 * 359.97438 * 19 17 16 48 48 H 0.97007 * 119.99714 * 179.97438 * 23 22 20 49 49 H 1.08997 * 109.46559 * 299.99420 * 28 14 13 50 50 H 1.09005 * 109.47082 * 180.02562 * 28 14 13 51 51 H 1.09002 * 109.46979 * 299.99327 * 29 11 10 52 52 H 1.08995 * 109.47843 * 59.99844 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3883 2.1715 0.4818 5 6 2.8446 1.9082 -1.2160 6 6 3.5501 1.6580 0.1183 7 1 4.1803 0.7720 0.1960 8 6 4.0227 2.8618 0.8919 9 8 3.2156 3.6181 1.3894 10 7 5.3423 3.1011 1.0262 11 6 5.8016 4.2746 1.7731 12 6 5.8244 5.4920 0.8466 13 6 6.3048 6.7175 1.6265 14 6 7.7136 6.4596 2.1646 15 7 8.1746 7.6360 2.9139 16 6 8.7690 8.6336 2.0142 17 6 9.2286 9.8235 2.8168 18 8 9.0755 9.8390 4.0199 19 7 9.8087 10.8705 2.1976 20 6 10.2273 11.9528 2.9279 21 1 10.0917 11.9663 3.9992 22 6 10.8259 13.0321 2.2895 23 7 11.2266 14.0696 2.9895 24 14 11.0597 13.0089 0.4364 25 1 9.8666 13.6007 -0.2205 26 1 12.2646 13.8001 0.0796 27 1 11.2337 11.6076 -0.0231 28 6 7.6908 5.2422 3.0911 29 6 7.2104 4.0171 2.3115 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.7222 2.9434 -1.5344 36 1 3.0101 1.1867 -2.0162 37 1 5.9878 2.4962 0.6282 38 1 5.1236 4.4640 2.6052 39 1 6.5025 5.3026 0.0144 40 1 4.8208 5.6755 0.4630 41 1 5.6270 6.9070 2.4589 42 1 6.3214 7.5847 0.9663 43 1 8.3914 6.2701 1.3322 44 1 7.4229 8.0383 3.4537 45 1 9.6209 8.1935 1.4959 46 1 8.0253 8.9535 1.2843 47 1 9.9308 10.8582 1.2354 48 1 11.6448 14.8230 2.5439 49 1 7.0131 5.4318 3.9234 50 1 8.6945 5.0588 3.4748 51 1 7.1941 3.1498 2.9716 52 1 7.8885 3.8277 1.4795 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752852455.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:02 Heat of formation + Delta-G solvation = -96.102948 kcal Electronic energy + Delta-G solvation = -28474.400211 eV Core-core repulsion = 24472.300756 eV Total energy + Delta-G solvation = -4002.099455 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.32328 -40.43011 -39.61213 -37.99249 -36.49516 -35.90089 -34.09422 -33.71786 -32.87403 -31.76259 -30.10024 -27.79412 -25.86299 -24.98499 -24.49325 -23.71397 -22.39298 -21.50907 -21.42830 -21.22666 -20.74721 -20.16190 -18.31235 -17.83635 -17.35803 -17.02808 -16.53031 -16.09112 -16.06080 -15.89981 -15.57581 -15.38440 -15.15733 -15.12002 -14.95849 -14.58881 -14.29960 -14.16496 -13.92778 -13.69552 -13.49077 -13.37089 -13.22727 -13.09396 -12.99221 -12.84486 -12.42726 -12.38165 -12.18892 -12.14116 -12.09952 -11.97896 -11.93324 -11.52106 -11.47646 -11.34481 -11.24746 -11.02908 -10.73268 -10.43362 -10.25404 -10.05990 -9.26337 -8.41691 -6.02813 1.29929 1.35415 1.44544 1.48050 1.95463 2.11125 2.22918 2.73175 2.86299 3.14834 3.39484 3.64045 3.67952 3.76752 3.78955 3.87678 4.01348 4.14276 4.18997 4.22488 4.25661 4.28275 4.39661 4.44197 4.48122 4.51357 4.52631 4.57181 4.58262 4.75576 4.78308 4.86383 4.93203 4.98115 5.01382 5.07946 5.15064 5.16117 5.21445 5.22062 5.29199 5.36414 5.40194 5.48518 5.53139 5.55199 5.91940 6.11803 6.38609 6.58424 6.59641 6.87676 7.27826 7.39384 7.96352 8.76081 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.026988 B = 0.001612 C = 0.001571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.238511 B =17364.521651 C =17814.833467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.089 4.089 3 C -0.129 4.129 4 H 0.088 0.912 5 C -0.136 4.136 6 C -0.190 4.190 7 H 0.153 0.847 8 C 0.535 3.465 9 O -0.591 6.591 10 N -0.708 5.708 11 C 0.146 3.854 12 C -0.113 4.113 13 C -0.144 4.144 14 C 0.092 3.908 15 N -0.681 5.681 16 C 0.063 3.937 17 C 0.447 3.553 18 O -0.616 6.616 19 N -0.590 5.590 20 C -0.331 4.331 21 H 0.054 0.946 22 C -0.014 4.014 23 N -0.935 5.935 24 Si 0.966 3.034 25 H -0.258 1.258 26 H -0.274 1.274 27 H -0.230 1.230 28 C -0.101 4.101 29 C -0.110 4.110 30 H 0.044 0.956 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.132 0.868 37 H 0.418 0.582 38 H 0.058 0.942 39 H 0.084 0.916 40 H 0.044 0.956 41 H 0.051 0.949 42 H 0.065 0.935 43 H 0.096 0.904 44 H 0.341 0.659 45 H 0.116 0.884 46 H 0.074 0.926 47 H 0.390 0.610 48 H 0.279 0.721 49 H 0.051 0.949 50 H 0.075 0.925 51 H 0.081 0.919 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.331 -33.529 -16.512 40.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.126 4.126 3 C -0.148 4.148 4 H 0.106 0.894 5 C -0.174 4.174 6 C -0.211 4.211 7 H 0.171 0.829 8 C 0.323 3.677 9 O -0.471 6.471 10 N -0.358 5.358 11 C 0.042 3.958 12 C -0.152 4.152 13 C -0.183 4.183 14 C -0.018 4.018 15 N -0.312 5.312 16 C -0.070 4.070 17 C 0.235 3.765 18 O -0.500 6.500 19 N -0.232 5.232 20 C -0.460 4.460 21 H 0.072 0.928 22 C -0.213 4.213 23 N -0.575 5.575 24 Si 0.785 3.215 25 H -0.182 1.182 26 H -0.199 1.199 27 H -0.153 1.153 28 C -0.140 4.140 29 C -0.148 4.148 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.150 0.850 37 H 0.255 0.745 38 H 0.076 0.924 39 H 0.103 0.897 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.114 0.886 44 H 0.160 0.840 45 H 0.134 0.866 46 H 0.092 0.908 47 H 0.226 0.774 48 H 0.089 0.911 49 H 0.070 0.930 50 H 0.093 0.907 51 H 0.099 0.901 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -14.269 -33.060 -15.150 39.065 hybrid contribution -0.347 1.334 -0.680 1.537 sum -14.616 -31.726 -15.830 38.350 Atomic orbital electron populations 1.21758 0.95356 1.02204 1.01643 1.21144 0.96152 0.92256 1.03059 1.22479 0.91161 0.99361 1.01828 0.89423 1.23185 1.00638 1.03152 0.90398 1.22386 0.98039 0.98508 1.02166 0.82926 1.20285 0.82455 0.85816 0.79182 1.90699 1.55303 1.50597 1.50519 1.45893 1.06754 1.27867 1.55320 1.20929 0.96349 0.84907 0.93665 1.21730 1.00897 0.93940 0.98633 1.22211 0.97661 0.98359 1.00115 1.21735 0.94117 0.90029 0.95896 1.60226 1.37697 1.07995 1.25271 1.21670 1.01188 0.90256 0.93866 1.21055 0.81754 0.85101 0.88589 1.90546 1.60397 1.81844 1.17235 1.42027 1.55589 1.16423 1.09189 1.19024 1.38178 0.95639 0.93206 0.92797 1.26125 0.95691 0.94007 1.05465 1.69811 1.40799 1.07875 1.39035 0.85357 0.79157 0.80689 0.76268 1.18247 1.19943 1.15281 1.21392 1.02013 0.92943 0.97656 1.21691 0.93873 0.98164 1.01072 0.93649 0.92565 0.91470 0.89811 0.91233 0.89718 0.85002 0.74493 0.92351 0.89749 0.93690 0.92998 0.91664 0.88581 0.84001 0.86578 0.90824 0.77439 0.91136 0.93024 0.90666 0.90053 0.88900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.87 71.98 0.71 -0.61 16 2 C -0.09 -0.71 6.22 30.59 0.19 -0.52 16 3 C -0.13 -1.62 5.25 -10.77 -0.06 -1.68 16 4 H 0.09 1.65 7.60 -2.38 -0.02 1.63 16 5 C -0.14 -1.29 9.88 30.62 0.30 -0.98 16 6 C -0.19 -2.08 5.91 -11.54 -0.07 -2.15 16 7 H 0.15 0.72 8.14 -2.39 -0.02 0.70 16 8 C 0.53 9.69 7.58 87.65 0.66 10.36 16 9 O -0.59 -16.85 15.92 -3.04 -0.05 -16.89 16 10 N -0.71 -8.96 5.08 -442.54 -2.25 -11.20 16 11 C 0.15 2.35 2.46 44.99 0.11 2.46 16 12 C -0.11 -1.93 5.49 30.59 0.17 -1.76 16 13 C -0.14 -2.85 5.17 30.59 0.16 -2.69 16 14 C 0.09 1.84 2.47 44.92 0.11 1.96 16 15 N -0.68 -19.97 5.87 -495.57 -2.91 -22.88 16 16 C 0.06 1.90 5.97 85.56 0.51 2.41 16 17 C 0.45 20.43 7.82 87.66 0.69 21.11 16 18 O -0.62 -34.81 15.78 -3.08 -0.05 -34.86 16 19 N -0.59 -28.10 5.09 -306.98 -1.56 -29.66 16 20 C -0.33 -19.66 10.16 84.04 0.85 -18.81 16 21 H 0.05 3.82 7.39 -2.91 -0.02 3.80 16 22 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 23 N -0.93 -56.81 13.96 21.66 0.30 -56.51 16 24 Si 0.97 38.84 27.74 68.60 1.90 40.74 16 25 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 26 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 27 H -0.23 -7.71 6.52 99.48 0.65 -7.06 16 28 C -0.10 -1.83 5.53 30.58 0.17 -1.66 16 29 C -0.11 -1.32 5.39 30.58 0.16 -1.16 16 30 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.07 0.43 8.14 -2.38 -0.02 0.41 16 33 H 0.08 0.38 7.88 -2.39 -0.02 0.36 16 34 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.13 0.53 8.03 -2.39 -0.02 0.51 16 37 H 0.42 2.30 8.60 -92.70 -0.80 1.50 16 38 H 0.06 1.33 7.58 -2.39 -0.02 1.31 16 39 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 40 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.05 1.20 8.13 -2.39 -0.02 1.18 16 42 H 0.06 1.30 7.45 -2.39 -0.02 1.28 16 43 H 0.10 1.62 7.80 -2.38 -0.02 1.60 16 44 H 0.34 11.17 8.17 -89.69 -0.73 10.44 16 45 H 0.12 2.91 8.06 -2.39 -0.02 2.89 16 46 H 0.07 1.86 7.44 -2.38 -0.02 1.84 16 47 H 0.39 15.24 5.76 -92.71 -0.53 14.71 16 48 H 0.28 15.48 8.31 -92.70 -0.77 14.70 16 49 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 50 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 51 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 52 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -83.64 416.72 -0.66 -84.30 By element: Atomic # 1 Polarization: 42.20 SS G_CDS: -1.19 Total: 41.01 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: 5.14 Total: 5.95 kcal Atomic # 7 Polarization: -113.83 SS G_CDS: -6.42 Total: -120.25 kcal Atomic # 8 Polarization: -51.66 SS G_CDS: -0.10 Total: -51.75 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 1.90 Total: 40.74 kcal Total: -83.64 -0.66 -84.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752852455.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.800 kcal (2) G-P(sol) polarization free energy of solvation -83.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds