Wall clock time and date at job start Tue Mar 31 2020 20:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47274 * 2 1 4 4 H 1.09006 * 109.46346 * 305.32123 * 3 2 1 5 5 C 1.52998 * 109.47112 * 185.32019 * 3 2 1 6 6 N 1.46502 * 109.46905 * 184.99624 * 5 3 2 7 7 C 1.34770 * 119.99899 * 180.02562 * 6 5 3 8 8 O 1.21280 * 120.00185 * 359.97438 * 7 6 5 9 9 C 1.50704 * 120.00268 * 180.02562 * 7 6 5 10 10 C 1.53003 * 109.80990 * 294.91840 * 9 7 6 11 11 C 1.53017 * 109.64571 * 174.38916 * 9 7 6 12 12 C 1.50065 * 110.14842 * 289.75038 * 11 9 7 13 13 C 1.29437 * 124.07620 * 342.86970 * 12 11 9 14 14 C 1.50073 * 124.07524 * 0.46579 * 13 12 11 15 15 C 1.53019 * 110.14467 * 342.87440 * 14 13 12 16 16 N 1.46898 * 109.47188 * 65.31667 * 3 2 1 17 17 C 1.46898 * 111.00134 * 57.35111 * 16 3 2 18 18 C 1.50699 * 109.47531 * 174.39958 * 17 16 3 19 19 O 1.21286 * 119.99562 * 359.97438 * 18 17 16 20 20 N 1.34778 * 120.00010 * 180.02562 * 18 17 16 21 21 C 1.37102 * 119.99353 * 179.97438 * 20 18 17 22 22 H 1.07991 * 120.00344 * 359.97438 * 21 20 18 23 23 C 1.38957 * 119.99326 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00244 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99690 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47160 * 89.99939 * 25 23 21 27 27 H 1.48493 * 109.47120 * 209.99753 * 25 23 21 28 28 H 1.48496 * 109.47308 * 329.99988 * 25 23 21 29 29 H 1.08997 * 109.47144 * 181.77177 * 1 2 3 30 30 H 1.09001 * 109.47484 * 301.77533 * 1 2 3 31 31 H 1.09000 * 109.47340 * 61.77458 * 1 2 3 32 32 H 1.08994 * 109.47191 * 239.99894 * 2 1 3 33 33 H 1.09007 * 109.47214 * 119.99340 * 2 1 3 34 34 H 1.08997 * 109.46901 * 64.99707 * 5 3 2 35 35 H 1.09000 * 109.47067 * 304.99673 * 5 3 2 36 36 H 0.96999 * 120.00245 * 0.02562 * 6 5 3 37 37 H 1.08998 * 109.47081 * 180.52480 * 10 9 7 38 38 H 1.09002 * 109.47114 * 300.52816 * 10 9 7 39 39 H 1.09004 * 109.47071 * 60.52179 * 10 9 7 40 40 H 1.09000 * 109.36070 * 49.96049 * 11 9 7 41 41 H 1.09002 * 109.36028 * 169.67857 * 11 9 7 42 42 H 1.08000 * 117.96480 * 162.89230 * 12 11 9 43 43 H 1.08003 * 117.96705 * 180.44874 * 13 12 11 44 44 H 1.08996 * 109.36218 * 222.66461 * 14 13 12 45 45 H 1.08996 * 109.35401 * 103.07907 * 14 13 12 46 46 H 1.09011 * 109.64064 * 289.74529 * 15 14 13 47 47 H 1.09006 * 109.64051 * 169.12430 * 15 14 13 48 48 H 1.00897 * 111.00114 * 293.39585 * 16 3 2 49 49 H 1.09005 * 109.47121 * 294.40332 * 17 16 3 50 50 H 1.09005 * 109.46943 * 54.39744 * 17 16 3 51 51 H 0.96993 * 120.00129 * 359.97438 * 20 18 17 52 52 H 0.96994 * 119.99750 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6009 1.9831 -0.8386 5 6 3.5641 1.4446 -0.1337 6 7 4.0630 2.8168 -0.0141 7 6 5.3851 3.0632 -0.1015 8 8 6.1619 2.1489 -0.2788 9 6 5.8984 4.4748 0.0221 10 6 5.3930 5.3150 -1.1525 11 6 7.4285 4.4671 0.0283 12 6 7.9372 3.8766 1.3107 13 6 7.2201 3.7358 2.3790 14 6 5.7768 4.1342 2.4815 15 6 5.4109 5.0869 1.3413 16 7 1.6580 2.0970 1.2584 17 6 2.1806 1.3585 2.4157 18 6 1.8884 2.1293 3.6773 19 8 1.3029 3.1898 3.6180 20 7 2.2787 1.6407 4.8712 21 6 2.0133 2.3423 6.0188 22 1 1.4919 3.2865 5.9661 23 6 2.4152 1.8383 7.2498 24 7 3.0493 0.6890 7.3140 25 14 2.0543 2.7945 8.8133 26 1 0.7347 2.3797 9.3537 27 1 3.1107 2.5158 9.8190 28 1 2.0304 4.2480 8.5103 29 1 -0.3633 -1.0271 0.0318 30 1 -0.3634 0.5411 0.8736 31 1 -0.3634 0.4860 -0.9055 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.8440 1.0397 -1.1063 35 1 3.9989 0.8299 0.6545 36 1 3.4417 3.5481 0.1280 37 1 5.7749 6.3319 -1.0626 38 1 5.7409 4.8776 -2.0884 39 1 4.3032 5.3340 -1.1433 40 1 7.7903 3.8735 -0.8113 41 1 7.7954 5.4890 -0.0672 42 1 8.9658 3.5491 1.3445 43 1 7.6895 3.3046 3.2509 44 1 5.6060 4.6311 3.4364 45 1 5.1513 3.2436 2.4229 46 1 5.8955 6.0506 1.4993 47 1 4.3294 5.2186 1.3068 48 1 0.6567 2.2048 1.3205 49 1 1.7026 0.3803 2.4686 50 1 3.2579 1.2310 2.3091 51 1 2.7473 0.7928 4.9185 52 1 3.3294 0.3371 8.1733 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753473006.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:46 Heat of formation + Delta-G solvation = -75.146324 kcal Electronic energy + Delta-G solvation = -31283.341106 eV Core-core repulsion = 27282.150399 eV Total energy + Delta-G solvation = -4001.190707 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.63687 -38.84433 -37.59327 -36.85136 -34.15062 -33.87695 -32.82891 -31.77727 -31.16201 -30.65577 -28.62767 -26.65994 -26.57553 -24.37428 -23.88206 -22.98353 -22.22999 -20.42774 -19.63120 -19.11478 -18.07126 -17.83065 -16.82526 -16.17952 -16.06206 -15.65016 -15.28373 -15.01122 -14.86006 -14.26416 -14.22269 -14.13675 -13.94695 -13.72839 -13.52647 -13.46154 -13.12196 -12.71761 -12.65748 -12.40451 -12.29957 -12.24293 -11.97178 -11.96226 -11.82642 -11.76331 -11.50583 -11.39317 -11.31195 -11.08003 -10.86482 -10.76861 -10.39952 -10.32922 -10.21543 -10.07924 -9.50271 -9.46705 -8.90480 -8.69750 -8.50254 -8.07711 -7.95455 -6.41139 -3.81955 2.53749 2.87519 3.17338 3.26272 3.31458 3.33915 3.91507 4.09724 4.33639 4.53714 4.63833 4.67444 4.73715 4.88231 4.98147 5.12675 5.16547 5.24427 5.25485 5.29469 5.38176 5.44885 5.45890 5.49028 5.58306 5.62362 5.62627 5.68788 5.75377 5.77349 5.81352 5.82813 5.87248 5.98027 6.00979 6.07958 6.10266 6.17598 6.19666 6.27081 6.32430 6.36777 6.63195 6.82404 7.14521 7.17345 7.55221 7.57225 7.76560 8.06497 8.46093 8.61654 9.18418 9.55174 10.06414 10.76530 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008785 B = 0.004162 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3186.388326 B = 6726.301935 C = 8938.359086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.161 4.161 3 C 0.074 3.926 4 H 0.088 0.912 5 C 0.128 3.872 6 N -0.713 5.713 7 C 0.527 3.473 8 O -0.544 6.544 9 C -0.081 4.081 10 C -0.138 4.138 11 C -0.064 4.064 12 C -0.151 4.151 13 C -0.151 4.151 14 C -0.095 4.095 15 C -0.105 4.105 16 N -0.657 5.657 17 C 0.044 3.956 18 C 0.443 3.557 19 O -0.582 6.582 20 N -0.564 5.564 21 C -0.298 4.298 22 H 0.102 0.898 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.928 3.072 26 H -0.279 1.279 27 H -0.284 1.284 28 H -0.270 1.270 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.409 0.591 37 H 0.067 0.933 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.099 0.901 43 H 0.100 0.900 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.073 0.927 47 H 0.075 0.925 48 H 0.351 0.649 49 H 0.047 0.953 50 H 0.085 0.915 51 H 0.391 0.609 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.228 3.341 -17.097 17.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.200 4.200 3 C -0.037 4.037 4 H 0.106 0.894 5 C 0.003 3.997 6 N -0.365 5.365 7 C 0.313 3.687 8 O -0.421 6.421 9 C -0.084 4.084 10 C -0.196 4.196 11 C -0.101 4.101 12 C -0.169 4.169 13 C -0.169 4.169 14 C -0.132 4.132 15 C -0.143 4.143 16 N -0.289 5.289 17 C -0.089 4.089 18 C 0.228 3.772 19 O -0.467 6.467 20 N -0.200 5.200 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.542 5.542 25 Si 0.755 3.245 26 H -0.205 1.205 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.245 0.755 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.117 0.883 43 H 0.118 0.882 44 H 0.096 0.904 45 H 0.095 0.905 46 H 0.091 0.909 47 H 0.094 0.906 48 H 0.172 0.828 49 H 0.064 0.936 50 H 0.104 0.896 51 H 0.224 0.776 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.979 3.746 -17.094 17.947 hybrid contribution -0.674 -0.839 1.152 1.576 sum 3.305 2.908 -15.942 16.539 Atomic orbital electron populations 1.21752 0.95300 1.01959 1.01969 1.22215 0.96721 0.98064 1.03045 1.21912 0.94466 0.93472 0.93854 0.89357 1.21351 0.92756 0.84124 1.01463 1.45800 1.07436 1.09806 1.73465 1.20334 0.82105 0.90718 0.75543 1.90662 1.56027 1.46281 1.49164 1.20897 0.97149 0.92864 0.97467 1.21822 1.01470 0.99671 0.96636 1.20293 0.92113 1.00587 0.97142 1.21802 0.99547 1.01215 0.94376 1.22029 0.96085 1.00562 0.98234 1.20470 0.93972 0.99776 0.99022 1.21679 1.01498 0.98782 0.92295 1.60187 1.19208 1.50025 0.99527 1.21760 1.01047 0.95281 0.90765 1.19776 0.85233 0.87888 0.84282 1.90513 1.45840 1.23763 1.86548 1.41864 1.51235 1.21970 1.04966 1.19667 1.34967 1.04939 0.83191 0.87988 1.25244 0.96828 0.96376 0.99417 1.69611 1.39233 1.18709 1.26666 0.85891 0.77927 0.79853 0.80823 1.20468 1.20949 1.19418 0.92539 0.92452 0.92606 0.91391 0.91032 0.91595 0.91623 0.75473 0.91410 0.92227 0.91876 0.90375 0.90648 0.88280 0.88180 0.90392 0.90466 0.90874 0.90648 0.82817 0.93551 0.89640 0.77588 0.91901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.73 37.16 0.36 -1.08 16 2 C -0.16 -1.59 5.13 -26.73 -0.14 -1.73 16 3 C 0.07 0.80 2.69 -67.71 -0.18 0.61 16 4 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 5 C 0.13 1.55 4.75 -4.04 -0.02 1.53 16 6 N -0.71 -9.01 5.17 -60.30 -0.31 -9.32 16 7 C 0.53 7.44 4.74 -10.99 -0.05 7.39 16 8 O -0.54 -9.50 15.30 5.56 0.09 -9.41 16 9 C -0.08 -0.94 0.65 -155.45 -0.10 -1.04 16 10 C -0.14 -1.24 8.46 37.16 0.31 -0.93 16 11 C -0.06 -0.75 4.54 -28.18 -0.13 -0.88 16 12 C -0.15 -2.03 9.06 -35.90 -0.33 -2.35 16 13 C -0.15 -2.20 9.61 -35.90 -0.35 -2.55 16 14 C -0.10 -1.44 5.59 -28.18 -0.16 -1.59 16 15 C -0.10 -1.29 4.72 -26.52 -0.13 -1.41 16 16 N -0.66 -9.14 5.33 -107.99 -0.58 -9.72 16 17 C 0.04 0.73 5.32 -4.98 -0.03 0.71 16 18 C 0.44 10.00 7.83 -10.99 -0.09 9.91 16 19 O -0.58 -14.97 15.90 5.55 0.09 -14.88 16 20 N -0.56 -14.00 5.29 -10.96 -0.06 -14.05 16 21 C -0.30 -8.17 9.68 -14.93 -0.14 -8.32 16 22 H 0.10 2.93 7.16 -52.49 -0.38 2.56 16 23 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 24 N -0.90 -24.45 13.05 55.50 0.72 -23.73 16 25 Si 0.93 20.94 29.55 -169.99 -5.02 15.92 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.61 6.86 -51.93 -0.36 0.26 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.80 6.20 -51.93 -0.32 0.47 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.93 6.60 -51.93 -0.34 0.58 16 36 H 0.41 4.95 7.30 -40.82 -0.30 4.65 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.53 7.97 -51.93 -0.41 0.11 16 40 H 0.08 0.96 7.68 -51.93 -0.40 0.56 16 41 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 42 H 0.10 1.22 8.06 -52.49 -0.42 0.80 16 43 H 0.10 1.45 8.06 -52.48 -0.42 1.02 16 44 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.08 1.34 7.36 -51.93 -0.38 0.96 16 46 H 0.07 0.81 8.13 -51.92 -0.42 0.38 16 47 H 0.07 0.93 7.59 -51.93 -0.39 0.53 16 48 H 0.35 5.04 7.29 -39.29 -0.29 4.75 16 49 H 0.05 0.72 6.47 -51.93 -0.34 0.38 16 50 H 0.09 1.43 6.21 -51.93 -0.32 1.11 16 51 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 52 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 407.29 15.07 6.14 6.14 Total: -1.00 -31.42 407.29 -8.94 -40.36 By element: Atomic # 1 Polarization: 28.68 SS G_CDS: -8.76 Total: 19.92 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: -1.25 Total: -1.22 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: -0.22 Total: -56.83 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: 0.17 Total: -24.29 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -31.42 -8.94 -40.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753473006.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.786 kcal (2) G-P(sol) polarization free energy of solvation -31.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds