Wall clock time and date at job start Tue Mar 31 2020 20:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47274 * 2 1 4 4 H 1.09006 * 109.46346 * 305.32123 * 3 2 1 5 5 C 1.52998 * 109.47112 * 185.32019 * 3 2 1 6 6 N 1.46502 * 109.46905 * 184.99624 * 5 3 2 7 7 C 1.34770 * 119.99899 * 180.02562 * 6 5 3 8 8 O 1.21280 * 120.00185 * 359.97438 * 7 6 5 9 9 C 1.50704 * 120.00268 * 180.02562 * 7 6 5 10 10 C 1.53003 * 109.80990 * 294.91840 * 9 7 6 11 11 C 1.53017 * 109.64571 * 174.38916 * 9 7 6 12 12 C 1.50065 * 110.14842 * 289.75038 * 11 9 7 13 13 C 1.29437 * 124.07620 * 342.86970 * 12 11 9 14 14 C 1.50073 * 124.07524 * 0.46579 * 13 12 11 15 15 C 1.53019 * 110.14467 * 342.87440 * 14 13 12 16 16 N 1.46898 * 109.47188 * 65.31667 * 3 2 1 17 17 C 1.46898 * 111.00134 * 57.35111 * 16 3 2 18 18 C 1.50699 * 109.47531 * 174.39958 * 17 16 3 19 19 O 1.21286 * 119.99562 * 359.97438 * 18 17 16 20 20 N 1.34778 * 120.00010 * 180.02562 * 18 17 16 21 21 C 1.37102 * 119.99353 * 179.97438 * 20 18 17 22 22 H 1.07991 * 120.00344 * 359.97438 * 21 20 18 23 23 C 1.38957 * 119.99326 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00244 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99690 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47160 * 89.99939 * 25 23 21 27 27 H 1.48493 * 109.47120 * 209.99753 * 25 23 21 28 28 H 1.48496 * 109.47308 * 329.99988 * 25 23 21 29 29 H 1.08997 * 109.47144 * 181.77177 * 1 2 3 30 30 H 1.09001 * 109.47484 * 301.77533 * 1 2 3 31 31 H 1.09000 * 109.47340 * 61.77458 * 1 2 3 32 32 H 1.08994 * 109.47191 * 239.99894 * 2 1 3 33 33 H 1.09007 * 109.47214 * 119.99340 * 2 1 3 34 34 H 1.08997 * 109.46901 * 64.99707 * 5 3 2 35 35 H 1.09000 * 109.47067 * 304.99673 * 5 3 2 36 36 H 0.96999 * 120.00245 * 0.02562 * 6 5 3 37 37 H 1.08998 * 109.47081 * 180.52480 * 10 9 7 38 38 H 1.09002 * 109.47114 * 300.52816 * 10 9 7 39 39 H 1.09004 * 109.47071 * 60.52179 * 10 9 7 40 40 H 1.09000 * 109.36070 * 49.96049 * 11 9 7 41 41 H 1.09002 * 109.36028 * 169.67857 * 11 9 7 42 42 H 1.08000 * 117.96480 * 162.89230 * 12 11 9 43 43 H 1.08003 * 117.96705 * 180.44874 * 13 12 11 44 44 H 1.08996 * 109.36218 * 222.66461 * 14 13 12 45 45 H 1.08996 * 109.35401 * 103.07907 * 14 13 12 46 46 H 1.09011 * 109.64064 * 289.74529 * 15 14 13 47 47 H 1.09006 * 109.64051 * 169.12430 * 15 14 13 48 48 H 1.00897 * 111.00114 * 293.39585 * 16 3 2 49 49 H 1.09005 * 109.47121 * 294.40332 * 17 16 3 50 50 H 1.09005 * 109.46943 * 54.39744 * 17 16 3 51 51 H 0.96993 * 120.00129 * 359.97438 * 20 18 17 52 52 H 0.96994 * 119.99750 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6009 1.9831 -0.8386 5 6 3.5641 1.4446 -0.1337 6 7 4.0630 2.8168 -0.0141 7 6 5.3851 3.0632 -0.1015 8 8 6.1619 2.1489 -0.2788 9 6 5.8984 4.4748 0.0221 10 6 5.3930 5.3150 -1.1525 11 6 7.4285 4.4671 0.0283 12 6 7.9372 3.8766 1.3107 13 6 7.2201 3.7358 2.3790 14 6 5.7768 4.1342 2.4815 15 6 5.4109 5.0869 1.3413 16 7 1.6580 2.0970 1.2584 17 6 2.1806 1.3585 2.4157 18 6 1.8884 2.1293 3.6773 19 8 1.3029 3.1898 3.6180 20 7 2.2787 1.6407 4.8712 21 6 2.0133 2.3423 6.0188 22 1 1.4919 3.2865 5.9661 23 6 2.4152 1.8383 7.2498 24 7 3.0493 0.6890 7.3140 25 14 2.0543 2.7945 8.8133 26 1 0.7347 2.3797 9.3537 27 1 3.1107 2.5158 9.8190 28 1 2.0304 4.2480 8.5103 29 1 -0.3633 -1.0271 0.0318 30 1 -0.3634 0.5411 0.8736 31 1 -0.3634 0.4860 -0.9055 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.8440 1.0397 -1.1063 35 1 3.9989 0.8299 0.6545 36 1 3.4417 3.5481 0.1280 37 1 5.7749 6.3319 -1.0626 38 1 5.7409 4.8776 -2.0884 39 1 4.3032 5.3340 -1.1433 40 1 7.7903 3.8735 -0.8113 41 1 7.7954 5.4890 -0.0672 42 1 8.9658 3.5491 1.3445 43 1 7.6895 3.3046 3.2509 44 1 5.6060 4.6311 3.4364 45 1 5.1513 3.2436 2.4229 46 1 5.8955 6.0506 1.4993 47 1 4.3294 5.2186 1.3068 48 1 0.6567 2.2048 1.3205 49 1 1.7026 0.3803 2.4686 50 1 3.2579 1.2310 2.3091 51 1 2.7473 0.7928 4.9185 52 1 3.3294 0.3371 8.1733 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753473006.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:45 Heat of formation + Delta-G solvation = -96.924890 kcal Electronic energy + Delta-G solvation = -31284.285496 eV Core-core repulsion = 27282.150399 eV Total energy + Delta-G solvation = -4002.135097 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.69689 -40.33781 -38.98301 -38.02953 -35.93852 -35.18124 -33.80865 -33.29114 -32.76656 -31.71697 -29.70465 -28.10601 -27.49804 -26.09416 -24.89270 -24.05853 -23.17078 -21.73082 -20.86589 -20.47255 -19.87366 -19.04351 -18.30867 -17.24930 -17.15758 -17.11313 -16.51934 -16.38296 -16.13916 -15.86952 -15.72047 -15.28099 -15.02778 -14.94152 -14.76871 -14.58915 -14.24825 -14.02726 -13.64709 -13.59160 -13.51552 -13.42158 -13.18491 -13.07420 -12.94511 -12.89047 -12.82988 -12.69445 -12.43648 -12.40559 -12.26486 -12.13619 -11.83351 -11.67543 -11.48133 -11.34123 -11.09849 -10.58063 -10.31890 -9.99693 -9.99274 -9.80049 -9.33026 -8.45408 -5.93729 1.37298 1.40835 1.41815 1.53446 1.78319 2.07504 2.27701 2.34292 2.95388 3.22146 3.53432 3.58749 3.70950 3.74020 3.76898 4.02155 4.14048 4.16315 4.23835 4.28239 4.35719 4.40192 4.42058 4.46202 4.52141 4.54516 4.58637 4.72452 4.76987 4.79693 4.83414 4.90434 4.92929 4.94772 5.01432 5.10908 5.13452 5.22230 5.24994 5.26412 5.33160 5.37176 5.41648 5.57922 5.72856 5.88866 6.06276 6.09314 6.42116 6.60753 6.71035 7.14091 7.38847 7.58092 8.12712 8.72154 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008785 B = 0.004162 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3186.388326 B = 6726.301935 C = 8938.359086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.157 4.157 3 C 0.085 3.915 4 H 0.114 0.886 5 C 0.127 3.873 6 N -0.707 5.707 7 C 0.521 3.479 8 O -0.583 6.583 9 C -0.077 4.077 10 C -0.134 4.134 11 C -0.066 4.066 12 C -0.140 4.140 13 C -0.178 4.178 14 C -0.093 4.093 15 C -0.098 4.098 16 N -0.661 5.661 17 C 0.065 3.935 18 C 0.444 3.556 19 O -0.613 6.613 20 N -0.577 5.577 21 C -0.327 4.327 22 H 0.081 0.919 23 C -0.014 4.014 24 N -0.923 5.923 25 Si 0.990 3.010 26 H -0.270 1.270 27 H -0.274 1.274 28 H -0.271 1.271 29 H 0.061 0.939 30 H 0.041 0.959 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.056 0.944 34 H 0.077 0.923 35 H 0.042 0.958 36 H 0.413 0.587 37 H 0.088 0.912 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.106 0.894 42 H 0.109 0.891 43 H 0.091 0.909 44 H 0.061 0.939 45 H 0.045 0.955 46 H 0.092 0.908 47 H 0.074 0.926 48 H 0.352 0.648 49 H 0.063 0.937 50 H 0.085 0.915 51 H 0.392 0.608 52 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.029 4.247 -18.871 19.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.196 4.196 3 C -0.025 4.025 4 H 0.131 0.869 5 C 0.003 3.997 6 N -0.358 5.358 7 C 0.309 3.691 8 O -0.463 6.463 9 C -0.080 4.080 10 C -0.191 4.191 11 C -0.103 4.103 12 C -0.158 4.158 13 C -0.196 4.196 14 C -0.130 4.130 15 C -0.136 4.136 16 N -0.294 5.294 17 C -0.068 4.068 18 C 0.231 3.769 19 O -0.499 6.499 20 N -0.214 5.214 21 C -0.457 4.457 22 H 0.099 0.901 23 C -0.214 4.214 24 N -0.565 5.565 25 Si 0.814 3.186 26 H -0.196 1.196 27 H -0.199 1.199 28 H -0.196 1.196 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.090 0.910 32 H 0.104 0.896 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.061 0.939 36 H 0.250 0.750 37 H 0.107 0.893 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.124 0.876 42 H 0.127 0.873 43 H 0.109 0.891 44 H 0.080 0.920 45 H 0.064 0.936 46 H 0.111 0.889 47 H 0.093 0.907 48 H 0.172 0.828 49 H 0.081 0.919 50 H 0.103 0.897 51 H 0.225 0.775 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.759 4.645 -18.889 19.812 hybrid contribution -0.596 -1.148 1.631 2.082 sum 3.163 3.496 -17.258 17.890 Atomic orbital electron populations 1.21735 0.94682 1.02285 1.02025 1.22174 0.97128 0.97086 1.03250 1.21947 0.93486 0.94392 0.92716 0.86853 1.21388 0.93511 0.83649 1.01181 1.45808 1.07264 1.10129 1.72607 1.20846 0.82138 0.91485 0.74665 1.90639 1.56900 1.47625 1.51133 1.20921 0.97158 0.91678 0.98204 1.21827 1.01975 1.00131 0.95199 1.20405 0.92126 1.02065 0.95739 1.22105 0.99813 0.99348 0.94560 1.21991 0.96078 1.02646 0.98881 1.20383 0.93924 0.99031 0.99686 1.21654 1.01657 0.98801 0.91473 1.60138 1.19169 1.50359 0.99698 1.21479 1.01227 0.95130 0.88949 1.20763 0.83277 0.87551 0.85319 1.90481 1.46843 1.25310 1.87279 1.41954 1.52018 1.22063 1.05332 1.19643 1.36267 1.04954 0.84821 0.90089 1.26017 0.96235 0.97194 1.01907 1.69685 1.39560 1.19629 1.27589 0.84965 0.78196 0.78314 0.77130 1.19577 1.19912 1.19572 0.92029 0.94002 0.91018 0.89557 0.92503 0.90477 0.93934 0.75040 0.89289 0.91800 0.91184 0.90622 0.87614 0.87350 0.89132 0.91998 0.93636 0.88926 0.90723 0.82757 0.91918 0.89701 0.77509 0.91500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.73 71.98 0.70 -1.82 16 2 C -0.16 -2.80 5.13 30.59 0.16 -2.64 16 3 C 0.08 1.67 2.69 44.92 0.12 1.79 16 4 H 0.11 1.78 8.14 -2.38 -0.02 1.77 16 5 C 0.13 2.98 4.75 86.38 0.41 3.39 16 6 N -0.71 -17.35 5.17 -463.07 -2.39 -19.74 16 7 C 0.52 14.42 4.74 87.66 0.42 14.83 16 8 O -0.58 -20.34 15.30 -3.03 -0.05 -20.39 16 9 C -0.08 -1.66 0.65 -52.79 -0.03 -1.70 16 10 C -0.13 -1.99 8.46 71.98 0.61 -1.38 16 11 C -0.07 -1.43 4.54 29.65 0.13 -1.29 16 12 C -0.14 -3.67 9.06 27.04 0.24 -3.42 16 13 C -0.18 -5.35 9.61 27.04 0.26 -5.09 16 14 C -0.09 -2.91 5.59 29.66 0.17 -2.75 16 15 C -0.10 -2.32 4.72 30.73 0.15 -2.18 16 16 N -0.66 -17.92 5.33 -495.56 -2.64 -20.56 16 17 C 0.06 2.17 5.32 85.56 0.45 2.63 16 18 C 0.44 20.58 7.83 87.66 0.69 21.27 16 19 O -0.61 -32.31 15.90 -3.05 -0.05 -32.36 16 20 N -0.58 -29.66 5.29 -306.99 -1.62 -31.28 16 21 C -0.33 -18.52 9.68 84.04 0.81 -17.70 16 22 H 0.08 4.85 7.16 -2.92 -0.02 4.83 16 23 C -0.01 -0.76 5.50 84.93 0.47 -0.30 16 24 N -0.92 -50.73 13.05 21.67 0.28 -50.45 16 25 Si 0.99 43.24 29.55 68.60 2.03 45.26 16 26 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 27 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 28 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.04 0.83 6.86 -2.39 -0.02 0.82 16 31 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.06 1.20 6.20 -2.38 -0.01 1.18 16 34 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.04 1.21 6.60 -2.39 -0.02 1.19 16 36 H 0.41 9.52 7.30 -92.71 -0.68 8.85 16 37 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.07 0.96 7.97 -2.38 -0.02 0.94 16 40 H 0.08 1.72 7.68 -2.39 -0.02 1.70 16 41 H 0.11 1.67 8.10 -2.39 -0.02 1.65 16 42 H 0.11 2.59 8.06 -2.91 -0.02 2.56 16 43 H 0.09 2.79 8.06 -2.91 -0.02 2.77 16 44 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.05 1.68 7.36 -2.39 -0.02 1.66 16 46 H 0.09 1.85 8.13 -2.38 -0.02 1.83 16 47 H 0.07 1.77 7.59 -2.38 -0.02 1.75 16 48 H 0.35 9.77 7.29 -89.70 -0.65 9.11 16 49 H 0.06 1.93 6.47 -2.38 -0.02 1.92 16 50 H 0.08 2.92 6.21 -2.38 -0.01 2.91 16 51 H 0.39 19.71 7.90 -92.71 -0.73 18.98 16 52 H 0.28 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -69.97 407.29 0.18 -69.79 By element: Atomic # 1 Polarization: 57.20 SS G_CDS: -1.12 Total: 56.07 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: 5.75 Total: 3.65 kcal Atomic # 7 Polarization: -115.66 SS G_CDS: -6.38 Total: -122.03 kcal Atomic # 8 Polarization: -52.65 SS G_CDS: -0.09 Total: -52.75 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -69.97 0.18 -69.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753473006.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.135 kcal (2) G-P(sol) polarization free energy of solvation -69.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds