Wall clock time and date at job start Tue Mar 31 2020 20:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47316 * 2 1 4 4 H 1.09002 * 109.46896 * 305.60043 * 3 2 1 5 5 C 1.53001 * 109.47028 * 65.59724 * 3 2 1 6 6 N 1.46497 * 109.46929 * 175.00127 * 5 3 2 7 7 C 1.34785 * 119.99683 * 179.97438 * 6 5 3 8 8 O 1.21278 * 120.00062 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99749 * 180.02562 * 7 6 5 10 10 C 1.52997 * 109.46720 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.35926 * 305.27450 * 10 9 7 12 12 C 1.50067 * 109.36299 * 65.00113 * 10 9 7 13 13 C 1.29442 * 124.07669 * 137.21575 * 12 10 9 14 14 C 1.50069 * 124.07741 * 359.51792 * 13 12 10 15 15 C 1.53019 * 110.14630 * 17.12434 * 14 13 12 16 16 C 1.53400 * 108.61470 * 310.45952 * 15 14 13 17 17 N 1.46893 * 109.47261 * 185.59659 * 3 2 1 18 18 C 1.46902 * 110.99714 * 85.71455 * 17 3 2 19 19 C 1.50708 * 109.47206 * 176.52561 * 18 17 3 20 20 O 1.21300 * 119.99697 * 359.97438 * 19 18 17 21 21 N 1.34770 * 120.00152 * 180.02562 * 19 18 17 22 22 C 1.37099 * 120.00001 * 179.97438 * 21 19 18 23 23 H 1.07998 * 119.99930 * 359.97438 * 22 21 19 24 24 C 1.38947 * 119.99883 * 179.97438 * 22 21 19 25 25 N 1.31405 * 120.00391 * 359.97438 * 24 22 21 26 26 Si 1.86809 * 119.99742 * 179.97438 * 24 22 21 27 27 H 1.48492 * 109.47057 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.46687 * 120.00302 * 26 24 22 29 29 H 1.48500 * 109.46936 * 240.00029 * 26 24 22 30 30 H 1.08998 * 109.47275 * 63.10753 * 1 2 3 31 31 H 1.08998 * 109.46857 * 183.10494 * 1 2 3 32 32 H 1.08997 * 109.46836 * 303.10125 * 1 2 3 33 33 H 1.09000 * 109.46904 * 239.99824 * 2 1 3 34 34 H 1.09007 * 109.46895 * 120.00101 * 2 1 3 35 35 H 1.09000 * 109.46889 * 55.00215 * 5 3 2 36 36 H 1.08998 * 109.47007 * 295.00501 * 5 3 2 37 37 H 0.96993 * 120.00443 * 0.02562 * 6 5 3 38 38 H 1.08994 * 109.46909 * 60.00278 * 9 7 6 39 39 H 1.09000 * 109.46991 * 300.00222 * 9 7 6 40 40 H 1.08000 * 117.95847 * 317.20335 * 12 10 9 41 41 H 1.07998 * 117.95952 * 179.52871 * 13 12 10 42 42 H 1.08996 * 109.35314 * 256.91750 * 14 13 12 43 43 H 1.08993 * 109.24946 * 137.26297 * 14 13 12 44 44 H 1.09002 * 109.64245 * 70.24993 * 15 14 13 45 45 H 1.08997 * 109.64288 * 190.67178 * 15 14 13 46 46 H 1.08995 * 109.63963 * 187.22942 * 16 15 14 47 47 H 1.08999 * 109.64239 * 307.85882 * 16 15 14 48 48 H 1.00900 * 111.00184 * 209.66046 * 17 3 2 49 49 H 1.08998 * 109.46875 * 296.51958 * 18 17 3 50 50 H 1.08994 * 109.47629 * 56.52377 * 18 17 3 51 51 H 0.97001 * 120.00361 * 359.97438 * 21 19 18 52 52 H 0.97003 * 120.00734 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5971 1.9844 -0.8356 5 6 1.6482 2.1220 1.3136 6 7 2.2376 3.4622 1.3649 7 6 2.0251 4.2512 2.4369 8 8 1.3464 3.8514 3.3591 9 6 2.6309 5.6300 2.4894 10 6 2.2391 6.3094 3.8031 11 1 1.1538 6.3020 3.9040 12 6 2.8506 5.5617 4.9516 13 6 3.4124 6.1298 5.9700 14 6 3.5400 7.6154 6.1396 15 6 2.5720 8.3382 5.2004 16 6 2.7366 7.7609 3.7887 17 7 3.5028 1.4447 -0.1351 18 6 3.9010 1.3875 -1.5479 19 6 5.4019 1.4774 -1.6508 20 8 6.0736 1.5796 -0.6460 21 7 5.9976 1.4453 -2.8593 22 6 7.3629 1.5277 -2.9529 23 1 7.9610 1.6187 -2.0583 24 6 7.9771 1.4941 -4.1989 25 7 7.2494 1.3828 -5.2874 26 14 9.8374 1.6070 -4.3264 27 1 10.4206 1.7242 -2.9659 28 1 10.3633 0.3850 -4.9864 29 1 10.2069 2.8008 -5.1286 30 1 -0.3634 0.4648 -0.9165 31 1 -0.3633 -1.0261 0.0557 32 1 -0.3633 0.5612 0.8609 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.0161 1.5309 2.1523 36 1 0.5626 2.1999 1.3727 37 1 2.7800 3.7820 0.6273 38 1 2.2629 6.2207 1.6506 39 1 3.7166 5.5524 2.4305 40 1 2.8198 4.4824 4.9269 41 1 3.8145 5.4952 6.7458 42 1 4.5612 7.9189 5.9093 43 1 3.3083 7.8805 7.1711 44 1 1.5480 8.1857 5.5415 45 1 2.7996 9.4041 5.1892 46 1 2.1500 8.3481 3.0822 47 1 3.7885 7.7834 3.5041 48 1 3.9070 2.2482 0.3222 49 1 3.5628 0.4470 -1.9829 50 1 3.4494 2.2203 -2.0868 51 1 5.4604 1.3640 -3.6629 52 1 7.6781 1.3597 -6.1572 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753479574.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:25 Heat of formation + Delta-G solvation = -82.795623 kcal Electronic energy + Delta-G solvation = -29033.639784 eV Core-core repulsion = 25032.117378 eV Total energy + Delta-G solvation = -4001.522406 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.25149 -38.79925 -38.24606 -37.19209 -34.15933 -33.88922 -32.88639 -32.61454 -31.25356 -31.17331 -28.95589 -27.34113 -25.88538 -24.22087 -23.63562 -22.58711 -22.24401 -20.59040 -20.12830 -19.34259 -18.12504 -17.97360 -17.25170 -16.64933 -16.11385 -15.99865 -15.67944 -15.21849 -14.98364 -14.60080 -14.47858 -14.35485 -13.98378 -13.87152 -13.55511 -13.54249 -13.26160 -13.08019 -12.87625 -12.58311 -12.43993 -12.39799 -12.29084 -11.95883 -11.72301 -11.67700 -11.57660 -11.39333 -11.17333 -11.10350 -11.08200 -10.75839 -10.59448 -10.37682 -10.33001 -10.26665 -9.79987 -9.56796 -9.17973 -9.08581 -8.50537 -8.18576 -8.01283 -6.46359 -3.87328 2.23262 2.55849 3.04573 3.13125 3.24277 3.31389 3.84246 4.00505 4.23537 4.41147 4.48571 4.54599 4.61474 4.75647 4.88199 4.94017 5.05199 5.10085 5.14601 5.18754 5.20818 5.23376 5.26644 5.35538 5.41226 5.44032 5.48839 5.50812 5.55271 5.67877 5.68886 5.71318 5.72083 5.83106 5.85718 5.89089 6.00653 6.10397 6.12816 6.14382 6.16522 6.25826 6.37231 6.61703 6.87426 7.12076 7.32887 7.51143 7.55160 8.01509 8.11107 8.55679 9.13140 9.48885 9.99752 10.71270 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009149 B = 0.002411 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3059.834503 B =11608.670361 C =14054.083269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.111 4.111 3 C 0.075 3.925 4 H 0.049 0.951 5 C 0.117 3.883 6 N -0.733 5.733 7 C 0.515 3.485 8 O -0.539 6.539 9 C -0.137 4.137 10 C -0.041 4.041 11 H 0.086 0.914 12 C -0.135 4.135 13 C -0.169 4.169 14 C -0.090 4.090 15 C -0.120 4.120 16 C -0.117 4.117 17 N -0.665 5.665 18 C 0.049 3.951 19 C 0.438 3.562 20 O -0.584 6.584 21 N -0.562 5.562 22 C -0.299 4.299 23 H 0.104 0.896 24 C 0.022 3.978 25 N -0.901 5.901 26 Si 0.929 3.071 27 H -0.268 1.268 28 H -0.281 1.281 29 H -0.281 1.281 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.399 0.601 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.111 0.889 41 H 0.100 0.900 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.063 0.937 45 H 0.064 0.936 46 H 0.066 0.934 47 H 0.067 0.933 48 H 0.349 0.651 49 H 0.088 0.912 50 H 0.044 0.956 51 H 0.392 0.608 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.426 9.655 12.980 21.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.149 4.149 3 C -0.035 4.035 4 H 0.067 0.933 5 C -0.006 4.006 6 N -0.386 5.386 7 C 0.302 3.698 8 O -0.416 6.416 9 C -0.177 4.177 10 C -0.060 4.060 11 H 0.104 0.896 12 C -0.153 4.153 13 C -0.188 4.188 14 C -0.127 4.127 15 C -0.157 4.157 16 C -0.155 4.155 17 N -0.300 5.300 18 C -0.083 4.083 19 C 0.224 3.776 20 O -0.468 6.468 21 N -0.199 5.199 22 C -0.429 4.429 23 H 0.122 0.878 24 C -0.179 4.179 25 N -0.542 5.542 26 Si 0.756 3.244 27 H -0.192 1.192 28 H -0.207 1.207 29 H -0.207 1.207 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.234 0.766 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.129 0.871 41 H 0.118 0.882 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.085 0.915 47 H 0.086 0.914 48 H 0.170 0.830 49 H 0.106 0.894 50 H 0.062 0.938 51 H 0.225 0.775 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.326 8.747 14.225 22.002 hybrid contribution 0.710 0.796 -1.478 1.823 sum -13.616 9.542 12.747 20.951 Atomic orbital electron populations 1.21854 0.95911 1.01848 1.01709 1.21483 0.94696 0.95266 1.03479 1.21853 0.88996 0.96870 0.95773 0.93290 1.21634 0.98387 0.82299 0.98322 1.46131 1.54124 1.16691 1.21696 1.20677 0.80351 0.87122 0.81617 1.90689 1.39312 1.75207 1.36376 1.21757 1.02904 0.93263 0.99815 1.19889 1.00836 0.93417 0.91817 0.89558 1.22162 0.97827 1.00420 0.94862 1.22021 1.01712 0.96169 0.98850 1.20437 0.99727 0.92959 0.99578 1.21584 0.99837 0.99174 0.95114 1.21765 1.01769 0.94809 0.97152 1.60112 1.06566 1.49684 1.13636 1.21765 0.95681 1.01628 0.89251 1.19800 0.88609 0.84745 0.84486 1.90535 1.65242 1.55281 1.35739 1.41870 1.07824 1.63742 1.06415 1.19751 0.81821 1.47122 0.94190 0.87848 1.25269 1.00608 0.97249 0.94795 1.69613 1.36216 1.50247 0.98136 0.85803 0.82229 0.77762 0.78583 1.19186 1.20709 1.20741 0.92855 0.92491 0.92580 0.91184 0.90956 0.90479 0.90723 0.76592 0.88617 0.88353 0.87132 0.88188 0.91080 0.91443 0.91799 0.91755 0.91506 0.91391 0.82961 0.89416 0.93841 0.77451 0.91877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.75 37.16 0.36 -1.01 16 2 C -0.11 -1.21 5.65 -26.73 -0.15 -1.36 16 3 C 0.08 0.87 2.27 -67.72 -0.15 0.72 16 4 H 0.05 0.53 7.73 -51.93 -0.40 0.13 16 5 C 0.12 1.33 4.95 -4.04 -0.02 1.31 16 6 N -0.73 -7.97 4.98 -60.29 -0.30 -8.27 16 7 C 0.52 6.05 7.46 -10.98 -0.08 5.97 16 8 O -0.54 -7.99 14.29 5.56 0.08 -7.91 16 9 C -0.14 -1.24 5.13 -27.88 -0.14 -1.38 16 10 C -0.04 -0.39 2.12 -91.85 -0.19 -0.59 16 11 H 0.09 0.90 7.94 -51.93 -0.41 0.49 16 12 C -0.13 -1.49 8.42 -35.90 -0.30 -1.79 16 13 C -0.17 -1.69 9.80 -35.90 -0.35 -2.04 16 14 C -0.09 -0.72 6.12 -28.18 -0.17 -0.90 16 15 C -0.12 -0.89 5.99 -26.51 -0.16 -1.05 16 16 C -0.12 -0.91 5.34 -26.29 -0.14 -1.05 16 17 N -0.66 -10.08 5.99 -107.99 -0.65 -10.72 16 18 C 0.05 0.82 6.00 -4.97 -0.03 0.79 16 19 C 0.44 9.98 7.81 -10.98 -0.09 9.89 16 20 O -0.58 -15.41 15.70 5.54 0.09 -15.32 16 21 N -0.56 -13.85 5.29 -10.96 -0.06 -13.91 16 22 C -0.30 -8.19 9.68 -14.93 -0.14 -8.33 16 23 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 25 N -0.90 -24.07 13.05 55.50 0.72 -23.35 16 26 Si 0.93 20.72 29.55 -169.99 -5.02 15.70 16 27 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 28 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 29 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.48 6.56 -51.93 -0.34 0.14 16 33 H 0.07 0.81 7.45 -51.93 -0.39 0.43 16 34 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 0.80 6.76 -51.93 -0.35 0.45 16 37 H 0.40 3.92 7.39 -40.82 -0.30 3.62 16 38 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.11 1.45 6.53 -52.49 -0.34 1.10 16 41 H 0.10 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.49 8.12 -51.93 -0.42 0.07 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 48 H 0.35 5.47 6.28 -39.29 -0.25 5.23 16 49 H 0.09 1.37 7.48 -51.93 -0.39 0.98 16 50 H 0.04 0.64 7.97 -51.93 -0.41 0.22 16 51 H 0.39 9.23 7.90 -40.82 -0.32 8.91 16 52 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 413.32 15.07 6.23 6.23 Total: -1.00 -31.91 413.32 -9.69 -41.60 By element: Atomic # 1 Polarization: 25.20 SS G_CDS: -8.91 Total: 16.29 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -1.86 Total: -0.33 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: -0.28 Total: -56.25 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: 0.17 Total: -23.24 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -31.91 -9.69 -41.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753479574.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.196 kcal (2) G-P(sol) polarization free energy of solvation -31.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds