Wall clock time and date at job start Tue Mar 31 2020 19:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46855 * 2 1 4 4 H 1.08998 * 115.54865 * 29.28076 * 3 2 1 5 5 C 1.52994 * 117.49717 * 243.60727 * 3 2 1 6 6 C 1.52996 * 60.00068 * 252.51641 * 5 3 2 7 7 H 1.09000 * 117.49946 * 107.49911 * 6 5 3 8 8 C 1.50703 * 117.49518 * 252.51248 * 6 5 3 9 9 O 1.21276 * 120.00032 * 68.62856 * 8 6 5 10 10 N 1.34776 * 119.99801 * 248.61771 * 8 6 5 11 11 C 1.46503 * 119.99654 * 175.87219 * 10 8 6 12 12 C 1.53005 * 109.47059 * 175.38496 * 11 10 8 13 13 C 1.53005 * 109.47037 * 55.38880 * 11 10 8 14 14 N 1.46901 * 109.46709 * 59.99704 * 13 11 10 15 15 C 1.46906 * 110.99255 * 180.02562 * 14 13 11 16 16 C 1.50705 * 109.46807 * 179.97438 * 15 14 13 17 17 O 1.21294 * 119.99801 * 0.02562 * 16 15 14 18 18 N 1.34779 * 120.00165 * 179.97438 * 16 15 14 19 19 C 1.37091 * 120.00366 * 180.02562 * 18 16 15 20 20 H 1.08000 * 120.00030 * 359.97438 * 19 18 16 21 21 C 1.38947 * 120.00490 * 180.02562 * 19 18 16 22 22 N 1.31413 * 119.99444 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00508 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46962 * 89.99792 * 23 21 19 25 25 H 1.48499 * 109.47318 * 209.99907 * 23 21 19 26 26 H 1.48501 * 109.46878 * 330.00318 * 23 21 19 27 27 C 1.53001 * 109.47491 * 295.38656 * 11 10 8 28 28 C 1.52997 * 117.49758 * 1.80526 * 27 11 10 29 29 C 1.52996 * 117.49567 * 293.14647 * 27 11 10 30 30 H 1.09005 * 109.47329 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47471 * 59.99794 * 1 2 3 32 32 H 1.09005 * 109.47364 * 299.99459 * 1 2 3 33 33 H 1.08998 * 109.47471 * 120.00206 * 2 1 3 34 34 H 1.09002 * 109.46476 * 240.00381 * 2 1 3 35 35 H 1.09004 * 117.50056 * 0.02562 * 5 3 2 36 36 H 1.09003 * 117.49775 * 145.02412 * 5 3 2 37 37 H 0.96999 * 120.00429 * 355.87767 * 10 8 6 38 38 H 1.08997 * 109.46896 * 60.00111 * 12 11 10 39 39 H 1.09000 * 109.47400 * 180.02562 * 12 11 10 40 40 H 1.09004 * 109.47057 * 300.00324 * 12 11 10 41 41 H 1.09000 * 109.47094 * 179.97438 * 13 11 10 42 42 H 1.08997 * 109.47034 * 299.99996 * 13 11 10 43 43 H 1.00898 * 111.00718 * 56.05154 * 14 13 11 44 44 H 1.08996 * 109.47618 * 299.99904 * 15 14 13 45 45 H 1.09000 * 109.47095 * 60.00217 * 15 14 13 46 46 H 0.97006 * 119.99508 * 0.02562 * 18 16 15 47 47 H 0.97009 * 119.99567 * 179.97438 * 22 21 19 48 48 H 1.08997 * 115.54478 * 147.47910 * 27 11 10 49 49 H 1.09001 * 117.49754 * 0.02562 * 28 27 11 50 50 H 1.09003 * 117.49910 * 145.01688 * 28 27 11 51 51 H 1.09003 * 117.49638 * 214.97683 * 29 27 11 52 52 H 1.08996 * 117.50117 * 359.97438 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.3879 2.1717 0.4810 5 6 2.8441 1.9075 -1.2157 6 6 3.5500 1.6579 0.1186 7 1 4.1803 0.7720 0.1965 8 6 4.0226 2.8621 0.8917 9 8 3.2154 3.6167 1.3916 10 7 5.3421 3.1003 1.0277 11 6 5.8010 4.3179 1.7009 12 6 7.3259 4.2892 1.8230 13 6 5.1790 4.3943 3.0967 14 7 5.5857 3.2192 3.8789 15 6 5.0052 3.2584 5.2279 16 6 5.4430 2.0395 5.9986 17 8 6.1676 1.2193 5.4757 18 7 5.0302 1.8615 7.2692 19 6 5.4288 0.7530 7.9705 20 1 6.0733 0.0222 7.5048 21 6 5.0028 0.5691 9.2802 22 7 4.2182 1.4581 9.8468 23 14 5.5454 -0.9416 10.2356 24 1 6.8122 -0.6458 10.9518 25 1 4.4951 -1.3091 11.2190 26 1 5.7603 -2.0709 9.2956 27 6 5.3776 5.5417 0.8861 28 6 4.5619 5.2964 -0.3848 29 6 6.0249 5.7348 -0.4866 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 0.5138 0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.8932 -0.5138 -0.8901 35 1 3.0096 1.1858 -2.0157 36 1 2.7215 2.9427 -1.5343 37 1 5.9879 2.4656 0.6799 38 1 7.7691 4.2347 0.8287 39 1 7.6674 5.1949 2.3243 40 1 7.6276 3.4173 2.4035 41 1 5.5208 5.2999 3.5977 42 1 4.0927 4.4146 3.0097 43 1 6.5909 3.1420 3.9196 44 1 5.3451 4.1563 5.7438 45 1 3.9177 3.2706 5.1553 46 1 4.4510 2.5177 7.6874 47 1 3.9205 1.3295 10.7611 48 1 5.1499 6.4363 1.4656 49 1 4.3265 4.2632 -0.6402 50 1 3.7976 6.0300 -0.6417 51 1 6.2226 6.7567 -0.8105 52 1 6.7527 4.9903 -0.8091 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753524366.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:35 Heat of formation + Delta-G solvation = -44.357210 kcal Electronic energy + Delta-G solvation = -30226.608113 eV Core-core repulsion = 26226.752522 eV Total energy + Delta-G solvation = -3999.855591 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.72896 -40.16346 -39.27433 -37.44385 -36.77834 -35.88249 -34.63364 -33.29316 -32.96183 -31.77093 -28.84630 -27.15311 -25.90148 -25.27206 -24.55830 -23.14603 -22.95548 -21.63650 -21.18580 -20.91434 -20.22968 -19.91264 -18.24696 -18.04581 -17.34648 -17.12388 -16.46057 -16.29440 -15.97844 -15.80856 -15.72793 -15.34432 -15.16707 -15.00514 -14.83634 -14.50162 -14.16785 -13.88836 -13.48959 -13.42986 -13.41143 -13.30139 -13.11289 -13.05495 -12.95953 -12.78848 -12.46155 -12.42101 -12.18514 -12.13312 -12.09934 -12.02938 -11.90951 -11.52214 -11.22965 -11.15665 -11.03846 -10.88380 -10.40383 -10.33836 -10.03944 -9.85562 -9.29999 -8.48102 -5.97499 1.36908 1.40329 1.53839 1.70002 2.01755 2.25669 2.28691 2.80539 2.91981 3.01491 3.18638 3.49552 3.68860 3.78990 3.84393 3.88202 3.92099 3.99404 4.19585 4.25971 4.28165 4.31400 4.35489 4.38607 4.48044 4.49009 4.53390 4.58548 4.62246 4.75876 4.79700 4.84388 4.89443 4.95224 5.01762 5.05865 5.07576 5.15138 5.23143 5.25176 5.27549 5.29127 5.31135 5.38788 5.49195 5.73606 5.85337 6.06256 6.46481 6.57224 6.76418 7.09806 7.48894 7.52868 8.07395 8.69540 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009972 B = 0.002949 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2807.106439 B = 9492.602051 C =11554.688251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.127 4.127 4 H 0.091 0.909 5 C -0.125 4.125 6 C -0.202 4.202 7 H 0.131 0.869 8 C 0.551 3.449 9 O -0.569 6.569 10 N -0.700 5.700 11 C 0.215 3.785 12 C -0.153 4.153 13 C 0.047 3.953 14 N -0.667 5.667 15 C 0.066 3.934 16 C 0.442 3.558 17 O -0.618 6.618 18 N -0.573 5.573 19 C -0.334 4.334 20 H 0.081 0.919 21 C -0.015 4.015 22 N -0.922 5.922 23 Si 0.996 3.004 24 H -0.269 1.269 25 H -0.271 1.271 26 H -0.272 1.272 27 C -0.162 4.162 28 C -0.175 4.175 29 C -0.153 4.153 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.042 0.958 33 H 0.054 0.946 34 H 0.084 0.916 35 H 0.128 0.872 36 H 0.095 0.905 37 H 0.408 0.592 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.059 0.941 41 H 0.039 0.961 42 H 0.079 0.921 43 H 0.343 0.657 44 H 0.063 0.937 45 H 0.086 0.914 46 H 0.395 0.605 47 H 0.278 0.722 48 H 0.104 0.896 49 H 0.089 0.911 50 H 0.083 0.917 51 H 0.104 0.896 52 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.304 6.441 -24.490 25.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.130 4.130 3 C -0.146 4.146 4 H 0.109 0.891 5 C -0.162 4.162 6 C -0.223 4.223 7 H 0.149 0.851 8 C 0.339 3.661 9 O -0.449 6.449 10 N -0.350 5.350 11 C 0.129 3.871 12 C -0.211 4.211 13 C -0.082 4.082 14 N -0.300 5.300 15 C -0.066 4.066 16 C 0.229 3.771 17 O -0.504 6.504 18 N -0.210 5.210 19 C -0.464 4.464 20 H 0.099 0.901 21 C -0.214 4.214 22 N -0.563 5.563 23 Si 0.819 3.181 24 H -0.194 1.194 25 H -0.196 1.196 26 H -0.196 1.196 27 C -0.182 4.182 28 C -0.213 4.213 29 C -0.190 4.190 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.102 0.898 35 H 0.146 0.854 36 H 0.113 0.887 37 H 0.243 0.757 38 H 0.104 0.896 39 H 0.099 0.901 40 H 0.078 0.922 41 H 0.057 0.943 42 H 0.097 0.903 43 H 0.164 0.836 44 H 0.081 0.919 45 H 0.104 0.896 46 H 0.228 0.772 47 H 0.087 0.913 48 H 0.122 0.878 49 H 0.108 0.892 50 H 0.101 0.899 51 H 0.123 0.877 52 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.345 6.051 -24.537 25.274 hybrid contribution 0.459 0.190 1.641 1.714 sum 0.114 6.241 -22.896 23.732 Atomic orbital electron populations 1.21730 0.94901 1.02140 1.01790 1.21150 0.96570 0.92883 1.02412 1.22391 0.91193 0.98900 1.02143 0.89085 1.23166 0.99872 1.03323 0.89869 1.22392 0.98050 0.98917 1.02936 0.85120 1.19684 0.82431 0.85117 0.78875 1.90603 1.55003 1.49980 1.49331 1.45772 1.06673 1.23694 1.58868 1.19702 0.94635 0.83404 0.89379 1.22073 0.91778 1.03255 1.03972 1.22490 1.02317 0.90352 0.93061 1.59978 1.15696 1.41928 1.12439 1.21462 1.00711 0.94569 0.89902 1.20708 0.84376 0.89557 0.82471 1.90465 1.42087 1.48058 1.69828 1.41940 1.45146 1.22470 1.11479 1.19690 1.29640 1.01271 0.95756 0.90129 1.26099 0.96244 1.01755 0.97312 1.69692 1.34617 1.36674 1.15302 0.84892 0.78204 0.77372 0.77651 1.19406 1.19582 1.19639 1.22490 1.06335 0.98730 0.90606 1.22980 0.94816 1.02062 1.01400 1.23049 0.95160 1.03150 0.97666 0.91697 0.91750 0.93903 0.92750 0.89763 0.85378 0.88701 0.75664 0.89557 0.90143 0.92167 0.94250 0.90257 0.83623 0.91922 0.89608 0.77181 0.91281 0.87829 0.89232 0.89857 0.87731 0.87734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.87 71.98 0.71 -1.80 16 2 C -0.09 -1.69 6.22 30.60 0.19 -1.50 16 3 C -0.13 -2.70 5.25 -10.79 -0.06 -2.76 16 4 H 0.09 2.42 7.60 -2.39 -0.02 2.40 16 5 C -0.13 -1.98 9.74 30.59 0.30 -1.68 16 6 C -0.20 -4.25 5.91 -11.54 -0.07 -4.32 16 7 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 8 C 0.55 14.41 4.64 87.66 0.41 14.82 16 9 O -0.57 -18.93 12.53 -3.02 -0.04 -18.97 16 10 N -0.70 -15.28 4.35 -422.90 -1.84 -17.12 16 11 C 0.22 4.66 0.66 3.61 0.00 4.66 16 12 C -0.15 -2.62 8.02 71.98 0.58 -2.05 16 13 C 0.05 1.35 4.33 86.30 0.37 1.72 16 14 N -0.67 -22.78 5.93 -517.91 -3.07 -25.85 16 15 C 0.07 2.56 6.17 85.56 0.53 3.08 16 16 C 0.44 22.09 7.82 87.66 0.69 22.78 16 17 O -0.62 -34.93 15.78 -3.07 -0.05 -34.98 16 18 N -0.57 -30.78 5.29 -306.98 -1.62 -32.40 16 19 C -0.33 -19.48 9.68 84.04 0.81 -18.67 16 20 H 0.08 4.96 7.16 -2.91 -0.02 4.94 16 21 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 22 N -0.92 -51.16 13.05 21.66 0.28 -50.88 16 23 Si 1.00 43.65 29.55 68.60 2.03 45.68 16 24 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 25 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 26 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 27 C -0.16 -3.19 4.86 -10.80 -0.05 -3.24 16 28 C -0.18 -3.45 8.53 30.62 0.26 -3.18 16 29 C -0.15 -2.23 9.68 30.62 0.30 -1.94 16 30 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.08 1.17 7.88 -2.39 -0.02 1.15 16 35 H 0.13 1.34 8.03 -2.39 -0.02 1.32 16 36 H 0.09 1.56 7.66 -2.39 -0.02 1.54 16 37 H 0.41 7.22 8.48 -92.71 -0.79 6.44 16 38 H 0.09 1.09 6.89 -2.39 -0.02 1.08 16 39 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.06 1.21 6.57 -2.39 -0.02 1.19 16 41 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.08 2.73 5.72 -2.39 -0.01 2.71 16 43 H 0.34 11.60 6.47 -89.70 -0.58 11.02 16 44 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 45 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 46 H 0.39 20.39 7.90 -92.70 -0.73 19.66 16 47 H 0.28 14.38 8.31 -92.70 -0.77 13.61 16 48 H 0.10 2.11 8.06 -2.39 -0.02 2.09 16 49 H 0.09 1.87 4.53 -2.39 -0.01 1.86 16 50 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 51 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 52 H 0.10 1.29 7.17 -2.39 -0.02 1.27 16 Total: -1.00 -72.19 412.67 -0.03 -72.22 By element: Atomic # 1 Polarization: 57.86 SS G_CDS: -1.15 Total: 56.71 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: 5.43 Total: 5.60 kcal Atomic # 7 Polarization: -120.00 SS G_CDS: -6.25 Total: -126.25 kcal Atomic # 8 Polarization: -53.87 SS G_CDS: -0.09 Total: -53.95 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -72.19 -0.03 -72.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753524366.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.865 kcal (2) G-P(sol) polarization free energy of solvation -72.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds