Wall clock time and date at job start Tue Mar 31 2020 19:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46602 * 2 1 4 4 H 1.08998 * 115.55686 * 29.27630 * 3 2 1 5 5 C 1.53003 * 117.49571 * 243.60469 * 3 2 1 6 6 C 1.52997 * 60.00268 * 252.51348 * 5 3 2 7 7 H 1.08999 * 117.50214 * 107.48634 * 6 5 3 8 8 C 1.50700 * 117.49915 * 252.51582 * 6 5 3 9 9 O 1.21275 * 120.00403 * 68.61336 * 8 6 5 10 10 N 1.34776 * 119.99486 * 248.61881 * 8 6 5 11 11 C 1.46508 * 120.00001 * 174.98944 * 10 8 6 12 12 C 1.53000 * 109.46876 * 304.31448 * 11 10 8 13 13 C 1.53002 * 109.46610 * 64.30776 * 11 10 8 14 14 N 1.46901 * 109.47127 * 60.00583 * 13 11 10 15 15 C 1.46891 * 110.99915 * 179.97438 * 14 13 11 16 16 C 1.50706 * 109.47173 * 179.97438 * 15 14 13 17 17 O 1.21294 * 119.99413 * 0.02562 * 16 15 14 18 18 N 1.34779 * 120.00028 * 180.02562 * 16 15 14 19 19 C 1.37102 * 119.99566 * 180.02562 * 18 16 15 20 20 H 1.07997 * 120.00060 * 359.97438 * 19 18 16 21 21 C 1.38948 * 119.99590 * 180.02562 * 19 18 16 22 22 N 1.31414 * 120.00234 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99928 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47057 * 90.00070 * 23 21 19 25 25 H 1.48496 * 109.46967 * 209.99842 * 23 21 19 26 26 H 1.48499 * 109.46763 * 329.99938 * 23 21 19 27 27 C 1.52995 * 109.47352 * 184.31207 * 11 10 8 28 28 C 1.52998 * 117.49857 * 132.83467 * 27 11 10 29 29 C 1.53002 * 117.49804 * 64.20788 * 27 11 10 30 30 H 1.08999 * 109.47242 * 299.99991 * 1 2 3 31 31 H 1.09007 * 109.46897 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47291 * 60.00423 * 1 2 3 33 33 H 1.08996 * 109.46857 * 119.99265 * 2 1 3 34 34 H 1.08999 * 109.47242 * 240.00009 * 2 1 3 35 35 H 1.08997 * 117.50012 * 0.02562 * 5 3 2 36 36 H 1.08996 * 117.50063 * 145.02222 * 5 3 2 37 37 H 0.97000 * 120.00412 * 354.99096 * 10 8 6 38 38 H 1.09003 * 109.47275 * 59.99880 * 12 11 10 39 39 H 1.09000 * 109.46758 * 179.97438 * 12 11 10 40 40 H 1.09003 * 109.47346 * 299.99670 * 12 11 10 41 41 H 1.09007 * 109.46425 * 180.02562 * 13 11 10 42 42 H 1.08994 * 109.47307 * 299.99923 * 13 11 10 43 43 H 1.00895 * 110.99652 * 303.95039 * 14 13 11 44 44 H 1.09003 * 109.47718 * 299.99829 * 15 14 13 45 45 H 1.09000 * 109.47269 * 60.00149 * 15 14 13 46 46 H 0.97000 * 120.00132 * 359.97438 * 18 16 15 47 47 H 0.97000 * 119.99879 * 180.02562 * 22 21 19 48 48 H 1.09001 * 115.55148 * 278.53889 * 27 11 10 49 49 H 1.09004 * 117.49763 * 359.97438 * 28 27 11 50 50 H 1.08999 * 117.50234 * 145.01997 * 28 27 11 51 51 H 1.08996 * 117.49705 * 214.97537 * 29 27 11 52 52 H 1.08992 * 117.49792 * 0.02562 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.3879 2.1718 0.4809 5 6 2.8442 1.9075 -1.2157 6 6 3.5501 1.6580 0.1186 7 1 4.1802 0.7721 0.1967 8 6 4.0224 2.8623 0.8917 9 8 3.2153 3.6170 1.3914 10 7 5.3420 3.1005 1.0277 11 6 5.8010 4.3275 1.6837 12 6 5.1960 5.5413 0.9757 13 6 5.3589 4.3186 3.1484 14 7 5.9398 3.1531 3.8283 15 6 5.5363 3.1121 5.2401 16 6 6.1495 1.9055 5.9029 17 8 6.8537 1.1540 5.2621 18 7 5.9153 1.6614 7.2076 19 6 6.4736 0.5640 7.8106 20 1 7.1006 -0.1051 7.2401 21 6 6.2317 0.3121 9.1555 22 7 5.4683 1.1261 9.8495 23 14 6.9918 -1.1835 9.9770 24 1 8.3171 -0.8194 10.5393 25 1 6.1027 -1.6533 11.0697 26 1 7.1596 -2.2667 8.9751 27 6 7.3274 4.4037 1.6121 28 6 7.9484 5.7293 1.1671 29 6 7.9646 4.5228 0.2262 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 3.0097 1.1859 -2.0156 36 1 2.7215 2.9426 -1.5344 37 1 5.9878 2.4597 0.6913 38 1 4.1085 5.4870 1.0267 39 1 5.5372 6.4541 1.4641 40 1 5.5109 5.5476 -0.0678 41 1 5.7000 5.2317 3.6364 42 1 4.2715 4.2644 3.1994 43 1 5.6903 2.2974 3.3556 44 1 5.8793 4.0166 5.7425 45 1 4.4501 3.0496 5.3059 46 1 5.3524 2.2626 7.7200 47 1 5.2998 0.9504 10.7885 48 1 7.8629 3.8241 2.3641 49 1 7.2695 6.5469 0.9249 50 1 8.8926 6.0220 1.6263 51 1 8.9194 4.0219 0.0665 52 1 7.2963 4.5472 -0.6345 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753524367.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:39 Heat of formation + Delta-G solvation = -30.085585 kcal Electronic energy + Delta-G solvation = -29914.637357 eV Core-core repulsion = 25915.400630 eV Total energy + Delta-G solvation = -3999.236727 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.68511 -38.80767 -38.10461 -36.97366 -35.25231 -34.00441 -33.54829 -32.30283 -31.19386 -30.64012 -27.58057 -25.53506 -24.75145 -24.02120 -23.48056 -22.73446 -22.35081 -20.79039 -19.95077 -19.41462 -19.03465 -17.84797 -17.59233 -16.32280 -16.18394 -15.46840 -15.36433 -15.25372 -14.89015 -14.66992 -14.43163 -14.32700 -14.23091 -13.93257 -13.46183 -13.18908 -12.92076 -12.74497 -12.58479 -12.51801 -12.38700 -12.32883 -11.75473 -11.57978 -11.53630 -11.52344 -11.38823 -11.28771 -11.25742 -11.15106 -11.00579 -10.50361 -10.43183 -10.37803 -10.25645 -10.19399 -10.15912 -9.61560 -9.47792 -9.12379 -8.36895 -7.95544 -7.89038 -6.38576 -3.79383 2.42341 2.93034 3.19571 3.27764 3.33611 3.61879 3.82461 3.95621 4.13834 4.34449 4.39414 4.51575 4.54510 4.59748 4.76978 4.91923 4.94418 4.98391 5.06815 5.11612 5.18843 5.21254 5.23071 5.30849 5.38368 5.43492 5.51310 5.57198 5.66791 5.68866 5.73104 5.75781 5.76394 5.79919 5.87259 5.92097 5.92856 6.00370 6.02645 6.07449 6.14457 6.17296 6.32271 6.39536 6.54495 7.29752 7.51557 7.57746 7.75602 8.09717 8.20759 8.64970 9.20904 9.58284 10.09826 10.79279 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008530 B = 0.002993 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3281.680142 B = 9351.552585 C =11739.393374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.097 4.097 3 C -0.115 4.115 4 H 0.117 0.883 5 C -0.149 4.149 6 C -0.192 4.192 7 H 0.123 0.877 8 C 0.545 3.455 9 O -0.538 6.538 10 N -0.714 5.714 11 C 0.214 3.786 12 C -0.167 4.167 13 C 0.049 3.951 14 N -0.662 5.662 15 C 0.050 3.950 16 C 0.443 3.557 17 O -0.585 6.585 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C -0.148 4.148 28 C -0.175 4.175 29 C -0.182 4.182 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.403 0.597 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.056 0.944 41 H 0.076 0.924 42 H 0.051 0.949 43 H 0.345 0.655 44 H 0.085 0.915 45 H 0.041 0.959 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.130 0.870 49 H 0.098 0.902 50 H 0.094 0.906 51 H 0.094 0.906 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.371 6.214 -22.633 23.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.134 4.134 3 C -0.134 4.134 4 H 0.135 0.865 5 C -0.186 4.186 6 C -0.213 4.213 7 H 0.141 0.859 8 C 0.332 3.668 9 O -0.415 6.415 10 N -0.365 5.365 11 C 0.128 3.872 12 C -0.226 4.226 13 C -0.082 4.082 14 N -0.294 5.294 15 C -0.083 4.083 16 C 0.229 3.771 17 O -0.469 6.469 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.166 4.166 28 C -0.212 4.212 29 C -0.219 4.219 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.120 0.880 36 H 0.115 0.885 37 H 0.238 0.762 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.075 0.925 41 H 0.095 0.905 42 H 0.069 0.931 43 H 0.164 0.836 44 H 0.103 0.897 45 H 0.059 0.941 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.148 0.852 49 H 0.117 0.883 50 H 0.113 0.887 51 H 0.112 0.888 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.933 6.559 -22.365 23.636 hybrid contribution -0.419 -0.914 0.711 1.231 sum -4.352 5.646 -21.653 22.796 Atomic orbital electron populations 1.21736 0.95193 1.01675 1.02062 1.21170 0.96293 0.93641 1.02303 1.22463 0.91429 0.98756 1.00760 0.86464 1.23071 1.02338 1.02894 0.90331 1.22338 0.97933 0.99206 1.01847 0.85881 1.19624 0.82256 0.85455 0.79479 1.90638 1.54145 1.48651 1.48078 1.46061 1.06784 1.23308 1.60339 1.19785 0.91596 0.84107 0.91681 1.22319 1.03350 0.96986 0.99913 1.22336 0.98323 0.95111 0.92411 1.60083 1.62365 1.05591 1.01391 1.21661 0.97624 0.99024 0.89944 1.19821 0.86107 0.87987 0.83206 1.90501 1.42046 1.50310 1.64037 1.41867 1.44960 1.25154 1.08133 1.19694 1.27365 1.02683 0.93086 0.87974 1.25260 0.97179 0.99063 0.96482 1.69618 1.37658 1.37628 1.09437 0.85863 0.78604 0.81110 0.78735 1.20414 1.20950 1.19449 1.22533 0.93408 1.01956 0.98714 1.23084 1.02698 0.91806 1.03601 1.22944 1.02517 1.02797 0.93613 0.92427 0.92602 0.92665 0.91154 0.91719 0.87953 0.88509 0.76209 0.90209 0.91344 0.92502 0.90548 0.93098 0.83552 0.89677 0.94062 0.77465 0.91902 0.85244 0.88330 0.88713 0.88792 0.89074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.87 37.16 0.37 -0.79 16 2 C -0.10 -0.80 6.22 -26.73 -0.17 -0.97 16 3 C -0.12 -1.10 5.25 -90.61 -0.48 -1.58 16 4 H 0.12 1.33 7.60 -51.93 -0.39 0.94 16 5 C -0.15 -1.19 9.88 -26.73 -0.26 -1.46 16 6 C -0.19 -1.88 5.91 -91.77 -0.54 -2.42 16 7 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 8 C 0.55 6.66 7.02 -10.99 -0.08 6.58 16 9 O -0.54 -8.21 12.49 5.56 0.07 -8.14 16 10 N -0.71 -7.77 4.30 -47.60 -0.20 -7.98 16 11 C 0.21 2.46 0.65 -131.82 -0.09 2.37 16 12 C -0.17 -1.78 6.98 37.16 0.26 -1.52 16 13 C 0.05 0.69 4.50 -3.82 -0.02 0.67 16 14 N -0.66 -11.22 5.32 -115.06 -0.61 -11.83 16 15 C 0.05 0.95 6.17 -4.98 -0.03 0.92 16 16 C 0.44 10.79 7.82 -10.98 -0.09 10.71 16 17 O -0.58 -16.05 15.78 5.55 0.09 -15.97 16 18 N -0.56 -14.72 5.29 -10.96 -0.06 -14.78 16 19 C -0.30 -8.49 9.68 -14.93 -0.14 -8.63 16 20 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -25.01 13.05 55.50 0.72 -24.28 16 23 Si 0.93 21.33 29.55 -169.99 -5.02 16.31 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 27 C -0.15 -1.61 4.98 -90.62 -0.45 -2.06 16 28 C -0.17 -1.61 9.64 -26.73 -0.26 -1.86 16 29 C -0.18 -1.60 9.82 -26.72 -0.26 -1.86 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.39 8.14 -51.92 -0.42 -0.04 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.46 7.88 -51.93 -0.41 0.05 16 35 H 0.10 0.64 8.03 -51.93 -0.42 0.22 16 36 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.40 3.80 8.48 -40.82 -0.35 3.46 16 38 H 0.08 1.01 6.03 -51.93 -0.31 0.69 16 39 H 0.07 0.66 6.78 -51.93 -0.35 0.31 16 40 H 0.06 0.54 6.98 -51.93 -0.36 0.18 16 41 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.05 0.82 6.32 -51.93 -0.33 0.49 16 43 H 0.35 6.20 7.74 -39.29 -0.30 5.89 16 44 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 45 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.39 9.85 7.90 -40.82 -0.32 9.53 16 47 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 48 H 0.13 1.75 7.54 -51.93 -0.39 1.36 16 49 H 0.10 0.83 5.88 -51.93 -0.31 0.53 16 50 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 51 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 52 H 0.09 0.75 7.34 -51.93 -0.38 0.37 16 LS Contribution 416.51 15.07 6.28 6.28 Total: -1.00 -32.09 416.51 -9.86 -41.95 By element: Atomic # 1 Polarization: 28.62 SS G_CDS: -8.79 Total: 19.83 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -2.33 Total: -1.39 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: -0.15 Total: -58.87 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: 0.16 Total: -24.10 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -32.09 -9.86 -41.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753524367.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.860 kcal (2) G-P(sol) polarization free energy of solvation -32.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds