Wall clock time and date at job start Tue Mar 31 2020 19:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46602 * 2 1 4 4 H 1.08998 * 115.55686 * 29.27630 * 3 2 1 5 5 C 1.53003 * 117.49571 * 243.60469 * 3 2 1 6 6 C 1.52997 * 60.00268 * 252.51348 * 5 3 2 7 7 H 1.08999 * 117.50214 * 107.48634 * 6 5 3 8 8 C 1.50700 * 117.49915 * 252.51582 * 6 5 3 9 9 O 1.21275 * 120.00403 * 68.61336 * 8 6 5 10 10 N 1.34776 * 119.99486 * 248.61881 * 8 6 5 11 11 C 1.46508 * 120.00001 * 174.98944 * 10 8 6 12 12 C 1.53000 * 109.46876 * 304.31448 * 11 10 8 13 13 C 1.53002 * 109.46610 * 64.30776 * 11 10 8 14 14 N 1.46901 * 109.47127 * 60.00583 * 13 11 10 15 15 C 1.46891 * 110.99915 * 179.97438 * 14 13 11 16 16 C 1.50706 * 109.47173 * 179.97438 * 15 14 13 17 17 O 1.21294 * 119.99413 * 0.02562 * 16 15 14 18 18 N 1.34779 * 120.00028 * 180.02562 * 16 15 14 19 19 C 1.37102 * 119.99566 * 180.02562 * 18 16 15 20 20 H 1.07997 * 120.00060 * 359.97438 * 19 18 16 21 21 C 1.38948 * 119.99590 * 180.02562 * 19 18 16 22 22 N 1.31414 * 120.00234 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99928 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47057 * 90.00070 * 23 21 19 25 25 H 1.48496 * 109.46967 * 209.99842 * 23 21 19 26 26 H 1.48499 * 109.46763 * 329.99938 * 23 21 19 27 27 C 1.52995 * 109.47352 * 184.31207 * 11 10 8 28 28 C 1.52998 * 117.49857 * 132.83467 * 27 11 10 29 29 C 1.53002 * 117.49804 * 64.20788 * 27 11 10 30 30 H 1.08999 * 109.47242 * 299.99991 * 1 2 3 31 31 H 1.09007 * 109.46897 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47291 * 60.00423 * 1 2 3 33 33 H 1.08996 * 109.46857 * 119.99265 * 2 1 3 34 34 H 1.08999 * 109.47242 * 240.00009 * 2 1 3 35 35 H 1.08997 * 117.50012 * 0.02562 * 5 3 2 36 36 H 1.08996 * 117.50063 * 145.02222 * 5 3 2 37 37 H 0.97000 * 120.00412 * 354.99096 * 10 8 6 38 38 H 1.09003 * 109.47275 * 59.99880 * 12 11 10 39 39 H 1.09000 * 109.46758 * 179.97438 * 12 11 10 40 40 H 1.09003 * 109.47346 * 299.99670 * 12 11 10 41 41 H 1.09007 * 109.46425 * 180.02562 * 13 11 10 42 42 H 1.08994 * 109.47307 * 299.99923 * 13 11 10 43 43 H 1.00895 * 110.99652 * 303.95039 * 14 13 11 44 44 H 1.09003 * 109.47718 * 299.99829 * 15 14 13 45 45 H 1.09000 * 109.47269 * 60.00149 * 15 14 13 46 46 H 0.97000 * 120.00132 * 359.97438 * 18 16 15 47 47 H 0.97000 * 119.99879 * 180.02562 * 22 21 19 48 48 H 1.09001 * 115.55148 * 278.53889 * 27 11 10 49 49 H 1.09004 * 117.49763 * 359.97438 * 28 27 11 50 50 H 1.08999 * 117.50234 * 145.01997 * 28 27 11 51 51 H 1.08996 * 117.49705 * 214.97537 * 29 27 11 52 52 H 1.08992 * 117.49792 * 0.02562 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.3879 2.1718 0.4809 5 6 2.8442 1.9075 -1.2157 6 6 3.5501 1.6580 0.1186 7 1 4.1802 0.7721 0.1967 8 6 4.0224 2.8623 0.8917 9 8 3.2153 3.6170 1.3914 10 7 5.3420 3.1005 1.0277 11 6 5.8010 4.3275 1.6837 12 6 5.1960 5.5413 0.9757 13 6 5.3589 4.3186 3.1484 14 7 5.9398 3.1531 3.8283 15 6 5.5363 3.1121 5.2401 16 6 6.1495 1.9055 5.9029 17 8 6.8537 1.1540 5.2621 18 7 5.9153 1.6614 7.2076 19 6 6.4736 0.5640 7.8106 20 1 7.1006 -0.1051 7.2401 21 6 6.2317 0.3121 9.1555 22 7 5.4683 1.1261 9.8495 23 14 6.9918 -1.1835 9.9770 24 1 8.3171 -0.8194 10.5393 25 1 6.1027 -1.6533 11.0697 26 1 7.1596 -2.2667 8.9751 27 6 7.3274 4.4037 1.6121 28 6 7.9484 5.7293 1.1671 29 6 7.9646 4.5228 0.2262 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 3.0097 1.1859 -2.0156 36 1 2.7215 2.9426 -1.5344 37 1 5.9878 2.4597 0.6913 38 1 4.1085 5.4870 1.0267 39 1 5.5372 6.4541 1.4641 40 1 5.5109 5.5476 -0.0678 41 1 5.7000 5.2317 3.6364 42 1 4.2715 4.2644 3.1994 43 1 5.6903 2.2974 3.3556 44 1 5.8793 4.0166 5.7425 45 1 4.4501 3.0496 5.3059 46 1 5.3524 2.2626 7.7200 47 1 5.2998 0.9504 10.7885 48 1 7.8629 3.8241 2.3641 49 1 7.2695 6.5469 0.9249 50 1 8.8926 6.0220 1.6263 51 1 8.9194 4.0219 0.0665 52 1 7.2963 4.5472 -0.6345 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753524367.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:38 Heat of formation + Delta-G solvation = -51.203525 kcal Electronic energy + Delta-G solvation = -29915.553100 eV Core-core repulsion = 25915.400630 eV Total energy + Delta-G solvation = -4000.152470 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.62942 -40.17209 -39.53909 -37.79419 -36.59883 -35.84141 -34.79222 -33.28986 -32.99313 -31.63088 -29.04713 -26.93481 -26.00871 -24.90075 -24.54014 -23.82129 -23.09616 -21.50519 -21.16898 -20.82019 -20.19551 -19.89780 -18.46465 -17.93867 -17.13879 -16.96968 -16.53616 -16.32163 -16.23286 -15.91765 -15.69339 -15.42817 -15.36931 -15.16964 -14.94764 -14.40329 -14.25706 -13.84696 -13.52882 -13.47459 -13.38110 -13.27046 -13.12041 -13.03668 -12.98222 -12.81570 -12.46162 -12.40069 -12.22548 -12.12653 -12.06835 -12.03789 -11.94011 -11.52517 -11.29329 -11.17841 -11.02617 -10.94732 -10.55891 -10.41392 -10.04248 -10.03393 -9.32613 -8.48237 -5.97674 1.37002 1.40493 1.51526 1.53831 2.01328 2.07140 2.27670 2.86256 2.87743 3.05048 3.18415 3.45676 3.61604 3.69112 3.77960 3.86931 3.88212 4.10325 4.18304 4.22227 4.25383 4.27910 4.31644 4.42870 4.46793 4.51493 4.53046 4.61352 4.62766 4.74791 4.76836 4.80423 4.90151 4.92248 4.95784 5.01154 5.04591 5.13982 5.21421 5.26363 5.28540 5.33892 5.38769 5.47167 5.49540 5.60607 5.82945 6.04479 6.30598 6.56932 6.63695 7.09602 7.29000 7.52527 8.07042 8.69357 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008530 B = 0.002993 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3281.680142 B = 9351.552585 C =11739.393374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 C -0.127 4.127 4 H 0.093 0.907 5 C -0.124 4.124 6 C -0.202 4.202 7 H 0.136 0.864 8 C 0.539 3.461 9 O -0.573 6.573 10 N -0.707 5.707 11 C 0.219 3.781 12 C -0.159 4.159 13 C 0.052 3.948 14 N -0.661 5.661 15 C 0.063 3.937 16 C 0.441 3.559 17 O -0.618 6.618 18 N -0.573 5.573 19 C -0.334 4.334 20 H 0.081 0.919 21 C -0.014 4.014 22 N -0.922 5.922 23 Si 0.995 3.005 24 H -0.270 1.270 25 H -0.271 1.271 26 H -0.271 1.271 27 C -0.162 4.162 28 C -0.168 4.168 29 C -0.164 4.164 30 H 0.043 0.957 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.083 0.917 35 H 0.129 0.871 36 H 0.094 0.906 37 H 0.411 0.589 38 H 0.058 0.942 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.033 0.967 43 H 0.338 0.662 44 H 0.104 0.896 45 H 0.050 0.950 46 H 0.395 0.605 47 H 0.278 0.722 48 H 0.102 0.898 49 H 0.110 0.890 50 H 0.097 0.903 51 H 0.100 0.900 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.826 6.217 -24.061 25.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.130 4.130 3 C -0.145 4.145 4 H 0.111 0.889 5 C -0.162 4.162 6 C -0.223 4.223 7 H 0.154 0.846 8 C 0.327 3.673 9 O -0.453 6.453 10 N -0.358 5.358 11 C 0.133 3.867 12 C -0.217 4.217 13 C -0.078 4.078 14 N -0.293 5.293 15 C -0.070 4.070 16 C 0.228 3.772 17 O -0.505 6.505 18 N -0.210 5.210 19 C -0.464 4.464 20 H 0.099 0.901 21 C -0.214 4.214 22 N -0.562 5.562 23 Si 0.819 3.181 24 H -0.195 1.195 25 H -0.195 1.195 26 H -0.196 1.196 27 C -0.181 4.181 28 C -0.205 4.205 29 C -0.201 4.201 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.102 0.898 35 H 0.147 0.853 36 H 0.112 0.888 37 H 0.247 0.753 38 H 0.077 0.923 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.102 0.898 42 H 0.051 0.949 43 H 0.156 0.844 44 H 0.122 0.878 45 H 0.068 0.932 46 H 0.229 0.771 47 H 0.087 0.913 48 H 0.120 0.880 49 H 0.128 0.872 50 H 0.116 0.884 51 H 0.118 0.882 52 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.382 6.583 -23.801 24.925 hybrid contribution -0.596 -0.869 1.151 1.560 sum -3.978 5.714 -22.650 23.696 Atomic orbital electron populations 1.21735 0.94911 1.02166 1.01817 1.21160 0.96552 0.92744 1.02589 1.22432 0.90957 0.99051 1.02104 0.88919 1.23151 0.99718 1.03384 0.89905 1.22385 0.98169 0.98635 1.03093 0.84576 1.20080 0.82254 0.85753 0.79170 1.90625 1.55030 1.50065 1.49627 1.46048 1.06676 1.23325 1.59708 1.19703 0.92214 0.84842 0.89965 1.22238 1.01830 0.96842 1.00785 1.22384 0.97060 0.94038 0.94274 1.60120 1.62589 1.06175 1.00403 1.21535 0.97611 0.96932 0.90932 1.20695 0.85097 0.88775 0.82589 1.90469 1.43473 1.51884 1.64655 1.41937 1.45237 1.24949 1.08856 1.19692 1.28846 1.03854 0.93995 0.90128 1.26094 0.97138 1.01739 0.96394 1.69686 1.37841 1.38774 1.09942 0.84897 0.78152 0.77392 0.77707 1.19528 1.19534 1.19581 1.22271 0.92478 1.03540 0.99825 1.23178 1.02732 0.91559 1.03065 1.22994 1.02545 1.01928 0.92640 0.93762 0.91700 0.91864 0.92406 0.89809 0.85293 0.88799 0.75283 0.92297 0.90199 0.90982 0.89847 0.94910 0.84358 0.87808 0.93198 0.77135 0.91266 0.88020 0.87220 0.88442 0.88192 0.87942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.87 71.98 0.71 -1.51 16 2 C -0.09 -1.47 6.22 30.60 0.19 -1.28 16 3 C -0.13 -2.39 5.25 -10.79 -0.06 -2.45 16 4 H 0.09 2.22 7.60 -2.39 -0.02 2.20 16 5 C -0.12 -1.78 9.88 30.59 0.30 -1.47 16 6 C -0.20 -3.80 5.91 -11.54 -0.07 -3.87 16 7 H 0.14 2.18 8.14 -2.39 -0.02 2.16 16 8 C 0.54 13.20 7.02 87.66 0.62 13.81 16 9 O -0.57 -18.02 12.49 -3.02 -0.04 -18.05 16 10 N -0.71 -15.07 4.30 -422.92 -1.82 -16.89 16 11 C 0.22 4.89 0.65 3.60 0.00 4.89 16 12 C -0.16 -3.17 6.98 71.98 0.50 -2.67 16 13 C 0.05 1.49 4.50 86.30 0.39 1.88 16 14 N -0.66 -22.65 5.32 -517.93 -2.76 -25.40 16 15 C 0.06 2.39 6.17 85.56 0.53 2.92 16 16 C 0.44 21.95 7.82 87.66 0.69 22.64 16 17 O -0.62 -34.89 15.78 -3.07 -0.05 -34.94 16 18 N -0.57 -30.56 5.29 -306.97 -1.62 -32.18 16 19 C -0.33 -19.42 9.68 84.04 0.81 -18.61 16 20 H 0.08 4.95 7.16 -2.91 -0.02 4.93 16 21 C -0.01 -0.76 5.50 84.93 0.47 -0.30 16 22 N -0.92 -50.90 13.05 21.66 0.28 -50.61 16 23 Si 1.00 43.49 29.55 68.60 2.03 45.52 16 24 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 25 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 26 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 27 C -0.16 -3.36 4.98 -10.80 -0.05 -3.41 16 28 C -0.17 -2.74 9.64 30.60 0.29 -2.44 16 29 C -0.16 -2.52 9.82 30.60 0.30 -2.21 16 30 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.08 1.00 7.88 -2.39 -0.02 0.98 16 35 H 0.13 1.18 8.03 -2.39 -0.02 1.16 16 36 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.41 7.41 8.48 -92.71 -0.79 6.63 16 38 H 0.06 1.47 6.03 -2.39 -0.01 1.46 16 39 H 0.08 1.39 6.78 -2.39 -0.02 1.38 16 40 H 0.07 1.22 6.98 -2.39 -0.02 1.20 16 41 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 42 H 0.03 1.07 6.32 -2.39 -0.02 1.06 16 43 H 0.34 12.40 7.74 -89.70 -0.69 11.70 16 44 H 0.10 3.59 8.14 -2.39 -0.02 3.57 16 45 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.40 20.24 7.90 -92.71 -0.73 19.51 16 47 H 0.28 14.33 8.31 -92.71 -0.77 13.56 16 48 H 0.10 2.75 7.54 -2.39 -0.02 2.73 16 49 H 0.11 1.55 5.88 -2.38 -0.01 1.54 16 50 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 51 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 52 H 0.10 1.37 7.34 -2.39 -0.02 1.35 16 Total: -1.00 -70.45 416.51 0.38 -70.07 By element: Atomic # 1 Polarization: 57.85 SS G_CDS: -1.26 Total: 56.59 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: 5.62 Total: 5.91 kcal Atomic # 7 Polarization: -119.17 SS G_CDS: -5.92 Total: -125.09 kcal Atomic # 8 Polarization: -52.91 SS G_CDS: -0.09 Total: -53.00 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -70.45 0.38 -70.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753524367.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.864 kcal (2) G-P(sol) polarization free energy of solvation -70.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds