Wall clock time and date at job start Tue Mar 31 2020 20:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46727 * 2 1 4 4 H 1.09004 * 109.47581 * 54.99840 * 3 2 1 5 5 N 1.46499 * 109.47380 * 294.99490 * 3 2 1 6 6 C 1.34780 * 119.99567 * 85.00501 * 5 3 2 7 7 C 1.50702 * 119.99727 * 180.02562 * 6 5 3 8 8 O 1.21281 * 119.99995 * 359.97438 * 6 5 3 9 9 C 1.50703 * 109.47013 * 174.99721 * 3 2 1 10 10 O 1.21279 * 120.00336 * 119.99976 * 9 3 2 11 11 N 1.34783 * 119.99886 * 299.99922 * 9 3 2 12 12 C 1.47480 * 125.66244 * 0.02826 * 11 9 3 13 13 C 1.55019 * 104.90041 * 203.99388 * 12 11 9 14 14 C 1.54505 * 101.53370 * 323.61783 * 13 12 11 15 15 C 1.47176 * 125.66093 * 179.97438 * 11 9 3 16 16 C 1.52272 * 110.20802 * 276.41367 * 14 13 12 17 17 C 1.53316 * 109.41566 * 177.78033 * 16 14 13 18 18 N 1.46929 * 108.70970 * 53.50876 * 17 16 14 19 19 C 1.36941 * 120.55732 * 125.78189 * 18 17 16 20 20 H 1.07997 * 119.99802 * 207.93202 * 19 18 17 21 21 C 1.38807 * 119.99966 * 28.20573 * 19 18 17 22 22 N 1.31617 * 120.00255 * 17.05076 * 21 19 18 23 23 Si 1.86801 * 119.99970 * 197.05062 * 21 19 18 24 24 H 1.48498 * 109.47339 * 89.99688 * 23 21 19 25 25 H 1.48494 * 109.47276 * 210.00273 * 23 21 19 26 26 H 1.48506 * 109.46977 * 330.00205 * 23 21 19 27 27 C 1.46919 * 118.88190 * 306.05385 * 18 17 16 28 28 C 1.52278 * 110.21318 * 153.22285 * 14 13 12 29 29 H 1.09003 * 109.46742 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47617 * 299.99931 * 1 2 3 31 31 H 1.09002 * 109.47139 * 60.00550 * 1 2 3 32 32 H 1.08996 * 109.47126 * 240.00255 * 2 1 3 33 33 H 1.08994 * 109.46811 * 119.99564 * 2 1 3 34 34 H 0.96991 * 120.00195 * 265.00229 * 5 3 2 35 35 H 1.09002 * 109.47310 * 59.99554 * 7 6 5 36 36 H 1.09000 * 109.47251 * 179.97438 * 7 6 5 37 37 H 1.09000 * 109.47042 * 299.99679 * 7 6 5 38 38 H 1.09006 * 110.35337 * 322.84922 * 12 11 9 39 39 H 1.08996 * 110.35561 * 85.02881 * 12 11 9 40 40 H 1.08997 * 111.01405 * 205.55490 * 13 12 11 41 41 H 1.09002 * 111.01416 * 81.67948 * 13 12 11 42 42 H 1.09008 * 109.90724 * 59.14962 * 15 11 9 43 43 H 1.09002 * 110.06908 * 297.97735 * 15 11 9 44 44 H 1.09003 * 109.48289 * 57.79248 * 16 14 13 45 45 H 1.09005 * 109.48293 * 297.76251 * 16 14 13 46 46 H 1.08995 * 109.59512 * 293.74040 * 17 16 14 47 47 H 1.09003 * 109.59500 * 173.27407 * 17 16 14 48 48 H 0.96998 * 120.00312 * 179.97438 * 22 21 19 49 49 H 1.09001 * 109.60141 * 173.71122 * 27 18 17 50 50 H 1.09003 * 109.60071 * 294.18469 * 27 18 17 51 51 H 1.08993 * 109.48049 * 302.19960 * 28 14 13 52 52 H 1.08999 * 109.47847 * 62.23206 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 7 1.6524 2.0975 -1.2518 6 6 0.4351 2.6644 -1.3670 7 6 0.0363 3.3377 -2.6549 8 8 -0.3396 2.6319 -0.4344 9 6 3.5418 1.4444 0.1239 10 8 4.2216 1.9436 -0.7476 11 7 4.1297 0.8912 1.2033 12 6 3.4275 0.2522 2.3319 13 6 4.4152 0.3498 3.5226 14 6 5.7732 0.1432 2.8153 15 6 5.5789 0.8237 1.4509 16 6 6.0533 -1.3430 2.6381 17 6 7.3767 -1.5261 1.8860 18 7 8.4254 -0.7729 2.5872 19 6 9.5804 -1.3924 2.9840 20 1 10.1239 -1.0236 3.8413 21 6 10.0557 -2.4908 2.2809 22 7 9.6121 -2.7370 1.0664 23 14 11.3250 -3.6195 3.0583 24 1 10.6342 -4.7054 3.7991 25 1 12.1788 -4.2100 1.9965 26 1 12.1712 -2.8402 3.9975 27 6 8.2114 0.6546 2.8609 28 6 6.8850 0.8250 3.6014 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 2.2719 2.1232 -1.9977 35 1 0.0674 2.6130 -3.4685 36 1 -0.9748 3.7337 -2.5599 37 1 0.7276 4.1530 -2.8679 38 1 2.5064 0.7893 2.5583 39 1 3.2105 -0.7908 2.1017 40 1 4.2295 -0.4401 4.2503 41 1 4.3649 1.3319 3.9928 42 1 5.9987 1.8294 1.4746 43 1 6.0646 0.2373 0.6709 44 1 5.2447 -1.7998 2.0675 45 1 6.1222 -1.8191 3.6162 46 1 7.2741 -1.1492 0.8685 47 1 7.6401 -2.5836 1.8618 48 1 9.9445 -3.5043 0.5750 49 1 9.0248 1.0344 3.4791 50 1 8.1753 1.2057 1.9211 51 1 6.6588 1.8861 3.7052 52 1 6.9624 0.3713 4.5894 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754561606.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:15 Heat of formation + Delta-G solvation = -52.604102 kcal Electronic energy + Delta-G solvation = -31118.091591 eV Core-core repulsion = 27117.878388 eV Total energy + Delta-G solvation = -4000.213203 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.90975 -39.86040 -38.48362 -35.98454 -35.53534 -33.38453 -32.63198 -31.15317 -30.05569 -29.98752 -29.37907 -27.91667 -25.98638 -24.51199 -23.20699 -22.29563 -21.98414 -20.73655 -20.70259 -19.73581 -18.25343 -17.64829 -16.92142 -16.53442 -16.25020 -15.95388 -15.75843 -15.07329 -14.91823 -14.35994 -14.21153 -14.01843 -13.81975 -13.66502 -13.27917 -13.21551 -13.04825 -12.92024 -12.80348 -12.67482 -12.47807 -12.28576 -12.06512 -11.99934 -11.69814 -11.63431 -11.39611 -11.24638 -10.98201 -10.93987 -10.75562 -10.49941 -10.22987 -10.20471 -10.11892 -9.92014 -9.85676 -9.54778 -9.44306 -9.27777 -8.63138 -8.46079 -6.67805 -5.80054 -3.22542 2.35998 2.49046 2.65226 3.21331 3.36473 3.43687 3.44774 4.18908 4.48173 4.54654 4.59716 4.65764 4.77816 4.81120 4.93209 4.99157 5.08158 5.14843 5.27138 5.30079 5.33181 5.38895 5.41964 5.53850 5.58679 5.62711 5.68277 5.76274 5.86184 5.88052 5.94087 6.02051 6.06878 6.09154 6.16869 6.21167 6.24391 6.28237 6.44206 6.56700 6.61983 6.71425 6.81237 6.95179 7.26526 7.32609 7.46525 7.63571 7.78439 7.95394 8.04353 8.43789 9.20116 9.83500 10.39817 11.28324 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022824 B = 0.002559 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.507453 B =10937.131328 C =11084.151112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.138 4.138 3 C 0.132 3.868 4 H 0.112 0.888 5 N -0.712 5.712 6 C 0.513 3.487 7 C -0.174 4.174 8 O -0.544 6.544 9 C 0.522 3.478 10 O -0.539 6.539 11 N -0.607 5.607 12 C 0.095 3.905 13 C -0.128 4.128 14 C -0.055 4.055 15 C 0.117 3.883 16 C -0.127 4.127 17 C 0.170 3.830 18 N -0.591 5.591 19 C -0.252 4.252 20 H 0.066 0.934 21 C 0.002 3.998 22 N -0.902 5.902 23 Si 0.902 3.098 24 H -0.288 1.288 25 H -0.292 1.292 26 H -0.279 1.279 27 C 0.143 3.857 28 C -0.118 4.118 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.411 0.589 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.081 0.919 44 H 0.049 0.951 45 H 0.060 0.940 46 H 0.019 0.981 47 H 0.088 0.912 48 H 0.254 0.746 49 H 0.054 0.946 50 H 0.018 0.982 51 H 0.052 0.948 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.078 7.744 -1.784 20.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.177 4.177 3 C 0.024 3.976 4 H 0.129 0.871 5 N -0.366 5.366 6 C 0.301 3.699 7 C -0.233 4.233 8 O -0.422 6.422 9 C 0.309 3.691 10 O -0.417 6.417 11 N -0.341 5.341 12 C -0.028 4.028 13 C -0.166 4.166 14 C -0.056 4.056 15 C -0.004 4.004 16 C -0.166 4.166 17 C 0.044 3.956 18 N -0.313 5.313 19 C -0.382 4.382 20 H 0.083 0.917 21 C -0.197 4.197 22 N -0.547 5.547 23 Si 0.732 3.268 24 H -0.215 1.215 25 H -0.218 1.218 26 H -0.205 1.205 27 C 0.016 3.984 28 C -0.157 4.157 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.248 0.752 35 H 0.107 0.893 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.092 0.908 42 H 0.085 0.915 43 H 0.099 0.901 44 H 0.067 0.933 45 H 0.079 0.921 46 H 0.037 0.963 47 H 0.106 0.894 48 H 0.064 0.936 49 H 0.073 0.927 50 H 0.036 0.964 51 H 0.071 0.929 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -19.217 7.904 -1.778 20.855 hybrid contribution 1.016 -0.654 -0.027 1.208 sum -18.201 7.250 -1.805 19.675 Atomic orbital electron populations 1.21782 0.93975 1.00982 1.03085 1.22068 0.97696 0.94121 1.03799 1.20779 0.91470 0.95712 0.89670 0.87079 1.45821 1.17150 1.57544 1.16129 1.20765 0.81022 0.77802 0.90349 1.21910 1.04275 1.01917 0.95209 1.90727 1.51210 1.59111 1.41114 1.20165 0.89637 0.78145 0.81118 1.90707 1.65214 1.46012 1.39720 1.48512 1.08644 1.56858 1.20068 1.22555 0.95960 0.97955 0.86281 1.22908 0.94641 1.02617 0.96425 1.20982 0.94167 0.97350 0.93107 1.22192 0.79023 1.01072 0.98126 1.22112 1.00391 0.92551 1.01590 1.20833 0.83943 0.99005 0.91798 1.44020 1.16467 1.03098 1.67742 1.19195 1.00764 1.10736 1.07460 0.91677 1.25040 0.98533 1.01201 0.94890 1.70030 1.46205 1.29142 1.09294 0.86296 0.81045 0.81104 0.78359 1.21484 1.21808 1.20460 1.20858 0.93891 0.87195 0.96425 1.21843 0.96317 0.98137 0.99419 0.93051 0.91981 0.92493 0.91136 0.89778 0.75242 0.89323 0.88885 0.89237 0.90771 0.90661 0.89708 0.90819 0.91545 0.90065 0.93276 0.92136 0.96301 0.89360 0.93642 0.92739 0.96431 0.92907 0.91723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.51 37.16 0.32 -1.05 16 2 C -0.14 -1.36 5.47 -26.73 -0.15 -1.50 16 3 C 0.13 1.47 2.02 -69.08 -0.14 1.34 16 4 H 0.11 1.27 7.29 -51.93 -0.38 0.89 16 5 N -0.71 -7.28 4.90 -54.93 -0.27 -7.55 16 6 C 0.51 5.15 6.51 -10.98 -0.07 5.08 16 7 C -0.17 -1.06 10.32 36.01 0.37 -0.69 16 8 O -0.54 -7.15 14.22 5.56 0.08 -7.07 16 9 C 0.52 7.31 7.28 -10.98 -0.08 7.23 16 10 O -0.54 -9.29 16.17 5.56 0.09 -9.20 16 11 N -0.61 -8.21 3.33 -170.66 -0.57 -8.77 16 12 C 0.10 1.00 4.82 -2.44 -0.01 0.99 16 13 C -0.13 -1.44 5.99 -24.87 -0.15 -1.59 16 14 C -0.06 -0.82 0.53 -154.10 -0.08 -0.91 16 15 C 0.12 1.87 5.07 -3.31 -0.02 1.85 16 16 C -0.13 -2.20 4.78 -26.94 -0.13 -2.33 16 17 C 0.17 3.86 5.03 -3.65 -0.02 3.84 16 18 N -0.59 -14.23 2.99 -172.45 -0.52 -14.75 16 19 C -0.25 -6.75 9.57 -15.06 -0.14 -6.89 16 20 H 0.07 1.72 7.89 -52.49 -0.41 1.31 16 21 C 0.00 0.05 4.91 -17.43 -0.09 -0.03 16 22 N -0.90 -25.86 11.19 55.49 0.62 -25.24 16 23 Si 0.90 21.42 29.59 -169.99 -5.03 16.39 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 C 0.14 2.87 6.21 -3.89 -0.02 2.85 16 28 C -0.12 -1.87 4.69 -27.17 -0.13 -2.00 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.64 7.85 -51.93 -0.41 0.24 16 31 H 0.06 0.61 5.65 -51.93 -0.29 0.31 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.76 4.88 -51.93 -0.25 0.51 16 34 H 0.41 3.97 7.79 -40.82 -0.32 3.65 16 35 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.09 0.55 8.12 -51.93 -0.42 0.13 16 37 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.64 7.42 -51.93 -0.39 0.25 16 39 H 0.08 0.74 6.59 -51.93 -0.34 0.40 16 40 H 0.08 0.87 8.01 -51.93 -0.42 0.45 16 41 H 0.07 0.78 8.01 -51.93 -0.42 0.36 16 42 H 0.07 1.11 7.58 -51.92 -0.39 0.71 16 43 H 0.08 1.53 6.07 -51.93 -0.31 1.22 16 44 H 0.05 0.78 7.49 -51.93 -0.39 0.39 16 45 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 46 H 0.02 0.46 6.52 -51.93 -0.34 0.12 16 47 H 0.09 2.29 6.03 -51.93 -0.31 1.97 16 48 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 49 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 50 H 0.02 0.37 7.47 -51.93 -0.39 -0.02 16 51 H 0.05 0.74 8.10 -51.93 -0.42 0.32 16 52 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 389.26 15.07 5.87 5.87 Total: -1.00 -32.16 389.26 -8.95 -41.11 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -8.69 Total: 3.04 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: -0.54 Total: 6.17 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: -0.73 Total: -56.31 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: 0.17 Total: -16.27 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.16 -8.95 -41.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754561606.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.490 kcal (2) G-P(sol) polarization free energy of solvation -32.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds