Wall clock time and date at job start Tue Mar 31 2020 20:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46727 * 2 1 4 4 H 1.09004 * 109.47581 * 54.99840 * 3 2 1 5 5 N 1.46499 * 109.47380 * 294.99490 * 3 2 1 6 6 C 1.34780 * 119.99567 * 85.00501 * 5 3 2 7 7 C 1.50702 * 119.99727 * 180.02562 * 6 5 3 8 8 O 1.21281 * 119.99995 * 359.97438 * 6 5 3 9 9 C 1.50703 * 109.47013 * 174.99721 * 3 2 1 10 10 O 1.21279 * 120.00336 * 119.99976 * 9 3 2 11 11 N 1.34783 * 119.99886 * 299.99922 * 9 3 2 12 12 C 1.47480 * 125.66244 * 0.02826 * 11 9 3 13 13 C 1.55019 * 104.90041 * 203.99388 * 12 11 9 14 14 C 1.54505 * 101.53370 * 323.61783 * 13 12 11 15 15 C 1.47176 * 125.66093 * 179.97438 * 11 9 3 16 16 C 1.52272 * 110.20802 * 276.41367 * 14 13 12 17 17 C 1.53316 * 109.41566 * 177.78033 * 16 14 13 18 18 N 1.46929 * 108.70970 * 53.50876 * 17 16 14 19 19 C 1.36941 * 120.55732 * 125.78189 * 18 17 16 20 20 H 1.07997 * 119.99802 * 207.93202 * 19 18 17 21 21 C 1.38807 * 119.99966 * 28.20573 * 19 18 17 22 22 N 1.31617 * 120.00255 * 17.05076 * 21 19 18 23 23 Si 1.86801 * 119.99970 * 197.05062 * 21 19 18 24 24 H 1.48498 * 109.47339 * 89.99688 * 23 21 19 25 25 H 1.48494 * 109.47276 * 210.00273 * 23 21 19 26 26 H 1.48506 * 109.46977 * 330.00205 * 23 21 19 27 27 C 1.46919 * 118.88190 * 306.05385 * 18 17 16 28 28 C 1.52278 * 110.21318 * 153.22285 * 14 13 12 29 29 H 1.09003 * 109.46742 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47617 * 299.99931 * 1 2 3 31 31 H 1.09002 * 109.47139 * 60.00550 * 1 2 3 32 32 H 1.08996 * 109.47126 * 240.00255 * 2 1 3 33 33 H 1.08994 * 109.46811 * 119.99564 * 2 1 3 34 34 H 0.96991 * 120.00195 * 265.00229 * 5 3 2 35 35 H 1.09002 * 109.47310 * 59.99554 * 7 6 5 36 36 H 1.09000 * 109.47251 * 179.97438 * 7 6 5 37 37 H 1.09000 * 109.47042 * 299.99679 * 7 6 5 38 38 H 1.09006 * 110.35337 * 322.84922 * 12 11 9 39 39 H 1.08996 * 110.35561 * 85.02881 * 12 11 9 40 40 H 1.08997 * 111.01405 * 205.55490 * 13 12 11 41 41 H 1.09002 * 111.01416 * 81.67948 * 13 12 11 42 42 H 1.09008 * 109.90724 * 59.14962 * 15 11 9 43 43 H 1.09002 * 110.06908 * 297.97735 * 15 11 9 44 44 H 1.09003 * 109.48289 * 57.79248 * 16 14 13 45 45 H 1.09005 * 109.48293 * 297.76251 * 16 14 13 46 46 H 1.08995 * 109.59512 * 293.74040 * 17 16 14 47 47 H 1.09003 * 109.59500 * 173.27407 * 17 16 14 48 48 H 0.96998 * 120.00312 * 179.97438 * 22 21 19 49 49 H 1.09001 * 109.60141 * 173.71122 * 27 18 17 50 50 H 1.09003 * 109.60071 * 294.18469 * 27 18 17 51 51 H 1.08993 * 109.48049 * 302.19960 * 28 14 13 52 52 H 1.08999 * 109.47847 * 62.23206 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 7 1.6524 2.0975 -1.2518 6 6 0.4351 2.6644 -1.3670 7 6 0.0363 3.3377 -2.6549 8 8 -0.3396 2.6319 -0.4344 9 6 3.5418 1.4444 0.1239 10 8 4.2216 1.9436 -0.7476 11 7 4.1297 0.8912 1.2033 12 6 3.4275 0.2522 2.3319 13 6 4.4152 0.3498 3.5226 14 6 5.7732 0.1432 2.8153 15 6 5.5789 0.8237 1.4509 16 6 6.0533 -1.3430 2.6381 17 6 7.3767 -1.5261 1.8860 18 7 8.4254 -0.7729 2.5872 19 6 9.5804 -1.3924 2.9840 20 1 10.1239 -1.0236 3.8413 21 6 10.0557 -2.4908 2.2809 22 7 9.6121 -2.7370 1.0664 23 14 11.3250 -3.6195 3.0583 24 1 10.6342 -4.7054 3.7991 25 1 12.1788 -4.2100 1.9965 26 1 12.1712 -2.8402 3.9975 27 6 8.2114 0.6546 2.8609 28 6 6.8850 0.8250 3.6014 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 2.2719 2.1232 -1.9977 35 1 0.0674 2.6130 -3.4685 36 1 -0.9748 3.7337 -2.5599 37 1 0.7276 4.1530 -2.8679 38 1 2.5064 0.7893 2.5583 39 1 3.2105 -0.7908 2.1017 40 1 4.2295 -0.4401 4.2503 41 1 4.3649 1.3319 3.9928 42 1 5.9987 1.8294 1.4746 43 1 6.0646 0.2373 0.6709 44 1 5.2447 -1.7998 2.0675 45 1 6.1222 -1.8191 3.6162 46 1 7.2741 -1.1492 0.8685 47 1 7.6401 -2.5836 1.8618 48 1 9.9445 -3.5043 0.5750 49 1 9.0248 1.0344 3.4791 50 1 8.1753 1.2057 1.9211 51 1 6.6588 1.8861 3.7052 52 1 6.9624 0.3713 4.5894 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754561606.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:14 Heat of formation + Delta-G solvation = -74.027709 kcal Electronic energy + Delta-G solvation = -31119.020588 eV Core-core repulsion = 27117.878388 eV Total energy + Delta-G solvation = -4001.142200 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.96480 -40.86842 -39.66849 -37.47296 -36.46350 -34.86901 -33.61390 -32.72268 -31.66274 -30.65821 -30.59289 -29.02051 -27.37248 -25.95887 -24.48350 -23.85100 -22.90685 -22.16765 -21.52721 -20.75712 -19.74757 -18.70926 -18.30267 -17.71633 -17.28577 -16.97587 -16.82544 -16.66290 -16.05116 -15.72521 -15.44999 -15.26307 -15.04007 -14.86365 -14.67631 -14.45289 -14.35032 -13.89552 -13.78905 -13.68210 -13.35369 -13.33163 -13.10879 -13.00571 -12.93050 -12.89175 -12.75460 -12.59034 -12.44707 -12.33887 -12.16284 -11.92184 -11.82513 -11.80854 -11.46321 -11.07189 -11.04027 -10.95802 -10.92349 -10.51716 -10.15611 -9.74111 -8.65600 -7.86400 -5.31891 1.38764 1.46880 1.47687 1.56624 1.56769 1.73406 2.35156 2.51573 3.20495 3.28461 3.59924 3.63562 3.73065 3.80320 3.82266 3.91606 3.99237 4.21526 4.24567 4.33007 4.44034 4.48108 4.54199 4.56428 4.60113 4.65801 4.68163 4.71278 4.75534 4.83153 4.88323 4.94722 4.99248 5.03854 5.06018 5.08930 5.12974 5.13809 5.27543 5.30511 5.36059 5.39220 5.42026 5.43734 5.53261 5.66073 5.80140 6.39975 6.40336 6.49517 6.92268 7.16166 7.19970 7.88128 8.39091 9.19468 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022824 B = 0.002559 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.507453 B =10937.131328 C =11084.151112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.133 4.133 3 C 0.141 3.859 4 H 0.114 0.886 5 N -0.713 5.713 6 C 0.510 3.490 7 C -0.167 4.167 8 O -0.577 6.577 9 C 0.519 3.481 10 O -0.580 6.580 11 N -0.606 5.606 12 C 0.090 3.910 13 C -0.115 4.115 14 C -0.053 4.053 15 C 0.125 3.875 16 C -0.111 4.111 17 C 0.177 3.823 18 N -0.608 5.608 19 C -0.259 4.259 20 H 0.067 0.933 21 C -0.053 4.053 22 N -0.937 5.937 23 Si 0.966 3.034 24 H -0.283 1.283 25 H -0.298 1.298 26 H -0.269 1.269 27 C 0.137 3.863 28 C -0.105 4.105 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.045 0.955 32 H 0.065 0.935 33 H 0.096 0.904 34 H 0.413 0.587 35 H 0.108 0.892 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.088 0.912 40 H 0.106 0.894 41 H 0.090 0.910 42 H 0.055 0.945 43 H 0.041 0.959 44 H 0.065 0.935 45 H 0.065 0.935 46 H -0.012 1.012 47 H 0.051 0.949 48 H 0.248 0.752 49 H 0.052 0.948 50 H 0.003 0.997 51 H 0.080 0.920 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.264 8.163 -0.026 22.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.171 4.171 3 C 0.032 3.968 4 H 0.132 0.868 5 N -0.367 5.367 6 C 0.299 3.701 7 C -0.226 4.226 8 O -0.457 6.457 9 C 0.307 3.693 10 O -0.460 6.460 11 N -0.339 5.339 12 C -0.031 4.031 13 C -0.152 4.152 14 C -0.053 4.053 15 C 0.002 3.998 16 C -0.150 4.150 17 C 0.052 3.948 18 N -0.332 5.332 19 C -0.389 4.389 20 H 0.085 0.915 21 C -0.248 4.248 22 N -0.583 5.583 23 Si 0.795 3.205 24 H -0.210 1.210 25 H -0.225 1.225 26 H -0.193 1.193 27 C 0.012 3.988 28 C -0.145 4.145 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.115 0.885 34 H 0.250 0.750 35 H 0.126 0.874 36 H 0.115 0.885 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.106 0.894 40 H 0.124 0.876 41 H 0.109 0.891 42 H 0.074 0.926 43 H 0.059 0.941 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.006 0.994 47 H 0.069 0.931 48 H 0.057 0.943 49 H 0.071 0.929 50 H 0.021 0.979 51 H 0.098 0.902 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -21.428 8.338 0.011 22.993 hybrid contribution 1.748 -0.719 -0.636 1.994 sum -19.680 7.620 -0.625 21.113 Atomic orbital electron populations 1.21697 0.93562 1.01521 1.02268 1.22049 0.97806 0.93086 1.04171 1.20728 0.88961 0.96765 0.90335 0.86809 1.45913 1.17431 1.57502 1.15872 1.21439 0.80306 0.77129 0.91194 1.21936 1.04675 1.02463 0.93573 1.90708 1.51989 1.60419 1.42555 1.20733 0.90747 0.77260 0.80521 1.90686 1.66347 1.47768 1.41180 1.48574 1.07751 1.56681 1.20860 1.22839 0.96611 0.98912 0.84715 1.22884 0.91265 1.04429 0.96643 1.20881 0.96423 0.95080 0.92963 1.21898 0.80560 0.99743 0.97608 1.21871 0.97399 0.94802 1.00900 1.20611 0.86562 0.96377 0.91265 1.44298 1.16282 1.04853 1.67748 1.19537 1.01407 1.10801 1.07170 0.91496 1.25798 1.00876 1.02818 0.95310 1.70202 1.47888 1.29529 1.10710 0.85278 0.78750 0.79183 0.77315 1.20995 1.22540 1.19330 1.21010 0.96625 0.84855 0.96303 1.21704 0.93796 1.00096 0.98856 0.91770 0.92489 0.93610 0.91662 0.88538 0.74970 0.87364 0.88512 0.87845 0.87827 0.89426 0.87572 0.89131 0.92643 0.94056 0.91627 0.91680 0.99390 0.93070 0.94265 0.92917 0.97862 0.90175 0.91029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 8.51 71.98 0.61 -1.71 16 2 C -0.13 -2.34 5.47 30.59 0.17 -2.17 16 3 C 0.14 2.93 2.02 44.25 0.09 3.02 16 4 H 0.11 2.36 7.29 -2.39 -0.02 2.34 16 5 N -0.71 -13.88 4.90 -446.09 -2.19 -16.06 16 6 C 0.51 9.57 6.51 87.66 0.57 10.14 16 7 C -0.17 -1.73 10.32 71.24 0.74 -0.99 16 8 O -0.58 -14.46 14.22 -3.03 -0.04 -14.50 16 9 C 0.52 14.16 7.28 87.66 0.64 14.80 16 10 O -0.58 -20.32 16.17 -3.03 -0.05 -20.37 16 11 N -0.61 -15.52 3.33 -812.24 -2.70 -18.22 16 12 C 0.09 1.57 4.82 86.88 0.42 1.99 16 13 C -0.11 -2.09 5.99 31.80 0.19 -1.90 16 14 C -0.05 -1.47 0.53 -51.91 -0.03 -1.50 16 15 C 0.12 3.96 5.07 86.49 0.44 4.39 16 16 C -0.11 -3.74 4.78 30.46 0.15 -3.60 16 17 C 0.18 8.38 5.03 86.40 0.43 8.82 16 18 N -0.61 -30.08 2.99 -699.52 -2.09 -32.17 16 19 C -0.26 -14.13 9.57 84.03 0.80 -13.33 16 20 H 0.07 3.56 7.89 -2.91 -0.02 3.53 16 21 C -0.05 -2.96 4.91 84.86 0.42 -2.54 16 22 N -0.94 -56.00 11.19 21.65 0.24 -55.76 16 23 Si 0.97 44.84 29.59 68.60 2.03 46.87 16 24 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 25 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 26 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 27 C 0.14 5.58 6.21 86.25 0.54 6.11 16 28 C -0.11 -3.15 4.69 30.31 0.14 -3.01 16 29 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.06 1.06 7.85 -2.39 -0.02 1.04 16 31 H 0.04 0.90 5.65 -2.39 -0.01 0.89 16 32 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.10 1.45 4.88 -2.39 -0.01 1.44 16 34 H 0.41 7.76 7.79 -92.71 -0.72 7.03 16 35 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.10 0.96 8.12 -2.39 -0.02 0.94 16 37 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.10 1.29 7.42 -2.38 -0.02 1.27 16 39 H 0.09 1.37 6.59 -2.39 -0.02 1.35 16 40 H 0.11 1.60 8.01 -2.39 -0.02 1.58 16 41 H 0.09 1.44 8.01 -2.39 -0.02 1.42 16 42 H 0.06 1.86 7.58 -2.38 -0.02 1.85 16 43 H 0.04 1.65 6.07 -2.39 -0.01 1.63 16 44 H 0.07 1.99 7.49 -2.39 -0.02 1.97 16 45 H 0.06 2.16 8.14 -2.38 -0.02 2.15 16 46 H -0.01 -0.62 6.52 -2.39 -0.02 -0.64 16 47 H 0.05 2.78 6.03 -2.39 -0.01 2.76 16 48 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 49 H 0.05 2.11 7.93 -2.39 -0.02 2.09 16 50 H 0.00 0.15 7.47 -2.39 -0.02 0.13 16 51 H 0.08 2.00 8.10 -2.39 -0.02 1.98 16 52 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -73.93 389.26 1.71 -72.22 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: 0.20 Total: 19.46 kcal Atomic # 6 Polarization: 12.22 SS G_CDS: 6.31 Total: 18.53 kcal Atomic # 7 Polarization: -115.47 SS G_CDS: -6.74 Total: -122.21 kcal Atomic # 8 Polarization: -34.78 SS G_CDS: -0.09 Total: -34.87 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -73.93 1.71 -72.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754561606.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.809 kcal (2) G-P(sol) polarization free energy of solvation -73.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds