Wall clock time and date at job start Tue Mar 31 2020 20:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47248 * 2 1 4 4 H 1.09005 * 109.47502 * 305.00025 * 3 2 1 5 5 N 1.46502 * 109.47156 * 64.99762 * 3 2 1 6 6 C 1.34771 * 120.00084 * 275.00262 * 5 3 2 7 7 C 1.50704 * 119.99785 * 180.02562 * 6 5 3 8 8 O 1.21279 * 120.00443 * 359.97438 * 6 5 3 9 9 C 1.50698 * 109.47553 * 185.00085 * 3 2 1 10 10 O 1.21272 * 120.00340 * 240.00194 * 9 3 2 11 11 N 1.34776 * 119.99945 * 59.99591 * 9 3 2 12 12 C 1.47485 * 125.66156 * 359.69502 * 11 9 3 13 13 C 1.55242 * 104.79064 * 155.92506 * 12 11 9 14 14 C 1.54507 * 101.43903 * 36.67094 * 13 12 11 15 15 C 1.47170 * 125.66555 * 180.02562 * 11 9 3 16 16 C 1.52272 * 110.20852 * 83.41816 * 14 13 12 17 17 C 1.53310 * 109.42464 * 182.20101 * 16 14 13 18 18 N 1.46927 * 108.70631 * 306.49634 * 17 16 14 19 19 C 1.36942 * 120.56251 * 234.21003 * 18 17 16 20 20 H 1.07992 * 120.00143 * 152.08204 * 19 18 17 21 21 C 1.38811 * 119.99808 * 332.07804 * 19 18 17 22 22 N 1.31625 * 120.00277 * 342.48914 * 21 19 18 23 23 Si 1.86802 * 119.99817 * 162.48422 * 21 19 18 24 24 H 1.48502 * 109.47038 * 94.33685 * 23 21 19 25 25 H 1.48502 * 109.47010 * 214.33551 * 23 21 19 26 26 H 1.48499 * 109.47362 * 334.33301 * 23 21 19 27 27 C 1.46931 * 118.87730 * 54.23062 * 18 17 16 28 28 C 1.52270 * 110.21007 * 206.60914 * 14 13 12 29 29 H 1.09003 * 109.47363 * 300.00381 * 1 2 3 30 30 H 1.09004 * 109.47536 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47359 * 60.00052 * 1 2 3 32 32 H 1.08996 * 109.46993 * 120.00088 * 2 1 3 33 33 H 1.09006 * 109.46978 * 240.00270 * 2 1 3 34 34 H 0.97002 * 119.99686 * 95.00222 * 5 3 2 35 35 H 1.08992 * 109.47152 * 359.97438 * 7 6 5 36 36 H 1.09006 * 109.47289 * 120.00221 * 7 6 5 37 37 H 1.09003 * 109.46705 * 239.99565 * 7 6 5 38 38 H 1.08991 * 110.35935 * 274.87928 * 12 11 9 39 39 H 1.09001 * 110.35249 * 37.16612 * 12 11 9 40 40 H 1.08992 * 111.20733 * 278.56892 * 13 12 11 41 41 H 1.09008 * 110.90934 * 154.63716 * 13 12 11 42 42 H 1.09005 * 109.90866 * 300.83968 * 15 11 9 43 43 H 1.09002 * 109.90790 * 61.90914 * 15 11 9 44 44 H 1.09006 * 109.48216 * 302.18813 * 16 14 13 45 45 H 1.08995 * 109.48178 * 62.21566 * 16 14 13 46 46 H 1.08999 * 109.60331 * 186.72677 * 17 16 14 47 47 H 1.09005 * 109.59726 * 66.25796 * 17 16 14 48 48 H 0.96998 * 119.99486 * 180.02562 * 22 21 19 49 49 H 1.08994 * 109.60374 * 185.99441 * 27 18 17 50 50 H 1.09003 * 109.72931 * 65.59618 * 27 18 17 51 51 H 1.08999 * 109.48138 * 297.76890 * 28 14 13 52 52 H 1.08999 * 109.48194 * 57.79928 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 7 1.6524 2.0975 1.2518 6 6 0.4352 2.6644 1.3669 7 6 0.0367 3.3387 2.6545 8 8 -0.3393 2.6327 0.4341 9 6 3.5419 1.4443 -0.1238 10 8 4.2216 1.9435 0.7476 11 7 4.1297 0.8911 -1.2031 12 6 3.4278 0.2469 -2.3289 13 6 4.4154 0.3491 -3.5224 14 6 5.7734 0.1427 -2.8149 15 6 5.5789 0.8235 -1.4507 16 6 6.0535 -1.3435 -2.6373 17 6 7.3770 -1.5267 -1.8856 18 7 8.4256 -0.7737 -2.5873 19 6 9.5805 -1.3932 -2.9842 20 1 10.1239 -1.0245 -3.8416 21 6 10.0529 -2.4950 -2.2844 22 7 9.6132 -2.7403 -1.0683 23 14 11.3125 -3.6298 -3.0688 24 1 12.6776 -3.2121 -2.6598 25 1 11.0673 -5.0249 -2.6230 26 1 11.1939 -3.5546 -4.5471 27 6 8.2141 0.6554 -2.8555 28 6 6.8851 0.8242 -3.6011 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 2.2719 2.1231 1.9978 35 1 0.8553 3.2672 3.3705 36 1 -0.1868 4.3879 2.4611 37 1 -0.8469 2.8483 3.0630 38 1 3.2167 -0.7969 -2.0968 39 1 2.5044 0.7801 -2.5549 40 1 4.3650 1.3310 -3.9929 41 1 4.2296 -0.4411 -4.2499 42 1 5.9987 1.8292 -1.4748 43 1 6.0622 0.2385 -0.6682 44 1 5.2449 -1.8001 -2.0663 45 1 6.1220 -1.8199 -3.6152 46 1 7.6404 -2.5841 -1.8611 47 1 7.2748 -1.1494 -0.8680 48 1 9.9437 -3.5101 -0.5793 49 1 9.0294 1.0366 -3.4704 50 1 8.1779 1.2049 -1.9148 51 1 6.9626 0.3703 -4.5891 52 1 6.6589 1.8854 -3.7053 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754561607.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:19 Heat of formation + Delta-G solvation = -51.873177 kcal Electronic energy + Delta-G solvation = -31117.744724 eV Core-core repulsion = 27117.563216 eV Total energy + Delta-G solvation = -4000.181508 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.90943 -39.85699 -38.47792 -35.97482 -35.53527 -33.38692 -32.63667 -31.14433 -30.03751 -29.99018 -29.36668 -27.91238 -25.97915 -24.51255 -23.20885 -22.30010 -21.98214 -20.74208 -20.70570 -19.73497 -18.25499 -17.64084 -16.93311 -16.52811 -16.24683 -15.95613 -15.75471 -15.07104 -14.91109 -14.36554 -14.21227 -14.01934 -13.81722 -13.67653 -13.27129 -13.20802 -13.04902 -12.94596 -12.79503 -12.67673 -12.46360 -12.28110 -12.05790 -12.00010 -11.69353 -11.63185 -11.38782 -11.24867 -10.98352 -10.95071 -10.72089 -10.50257 -10.25872 -10.20430 -10.12147 -9.91981 -9.85649 -9.55148 -9.43759 -9.28063 -8.63086 -8.45732 -6.67429 -5.80303 -3.22257 2.35743 2.49047 2.65587 3.21584 3.35863 3.43486 3.45519 4.18894 4.48307 4.55509 4.59411 4.65937 4.77861 4.80932 4.90296 4.96177 5.10965 5.14718 5.26992 5.30190 5.33401 5.38914 5.42023 5.51555 5.58667 5.62704 5.68486 5.76173 5.85924 5.88135 5.94279 6.02174 6.07016 6.08960 6.16654 6.21129 6.24221 6.27526 6.44324 6.56819 6.62132 6.71510 6.81335 6.95285 7.26601 7.32450 7.46590 7.63438 7.78428 7.95208 8.04361 8.43712 9.19966 9.83615 10.39996 11.28039 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022828 B = 0.002559 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.274703 B =10937.270854 C =11080.981302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.138 4.138 3 C 0.132 3.868 4 H 0.112 0.888 5 N -0.711 5.711 6 C 0.513 3.487 7 C -0.170 4.170 8 O -0.545 6.545 9 C 0.522 3.478 10 O -0.539 6.539 11 N -0.608 5.608 12 C 0.095 3.905 13 C -0.128 4.128 14 C -0.055 4.055 15 C 0.117 3.883 16 C -0.127 4.127 17 C 0.170 3.830 18 N -0.590 5.590 19 C -0.252 4.252 20 H 0.065 0.935 21 C 0.002 3.998 22 N -0.902 5.902 23 Si 0.900 3.100 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.279 1.279 27 C 0.143 3.857 28 C -0.118 4.118 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.411 0.589 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.084 0.916 42 H 0.066 0.934 43 H 0.081 0.919 44 H 0.048 0.952 45 H 0.060 0.940 46 H 0.088 0.912 47 H 0.019 0.981 48 H 0.253 0.747 49 H 0.054 0.946 50 H 0.018 0.982 51 H 0.064 0.936 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.146 7.718 1.765 20.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.177 4.177 3 C 0.023 3.977 4 H 0.129 0.871 5 N -0.365 5.365 6 C 0.301 3.699 7 C -0.230 4.230 8 O -0.423 6.423 9 C 0.309 3.691 10 O -0.417 6.417 11 N -0.341 5.341 12 C -0.028 4.028 13 C -0.166 4.166 14 C -0.056 4.056 15 C -0.004 4.004 16 C -0.166 4.166 17 C 0.044 3.956 18 N -0.313 5.313 19 C -0.381 4.381 20 H 0.083 0.917 21 C -0.197 4.197 22 N -0.546 5.546 23 Si 0.730 3.270 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.205 1.205 27 C 0.016 3.984 28 C -0.157 4.157 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.248 0.752 35 H 0.096 0.904 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.103 0.897 42 H 0.085 0.915 43 H 0.099 0.901 44 H 0.067 0.933 45 H 0.079 0.921 46 H 0.106 0.894 47 H 0.037 0.963 48 H 0.063 0.937 49 H 0.073 0.927 50 H 0.036 0.964 51 H 0.083 0.917 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.293 7.868 1.753 20.909 hybrid contribution 1.021 -0.646 0.041 1.209 sum -18.272 7.221 1.794 19.729 Atomic orbital electron populations 1.21781 0.93976 1.00981 1.03078 1.22069 0.97697 0.94113 1.03804 1.20787 0.91487 0.95728 0.89709 0.87067 1.45911 1.17101 1.57385 1.16107 1.20763 0.81041 0.77793 0.90331 1.21838 1.03648 1.02517 0.94975 1.90726 1.51261 1.59311 1.41009 1.20158 0.89632 0.78168 0.81105 1.90706 1.65214 1.46043 1.39695 1.48516 1.08670 1.56724 1.20192 1.22603 0.95974 0.97880 0.86312 1.22949 0.94631 1.02610 0.96397 1.20978 0.94178 0.97345 0.93099 1.22194 0.79007 1.01074 0.98114 1.22107 1.00368 0.92557 1.01586 1.20831 0.83969 0.99005 0.91781 1.44036 1.16496 1.02984 1.67799 1.19173 1.00864 1.10568 1.07536 0.91727 1.25036 0.98535 1.01184 0.94917 1.70039 1.46216 1.29061 1.09321 0.86315 0.81261 0.80451 0.78952 1.21488 1.21592 1.20456 1.20949 0.93867 0.87173 0.96400 1.21918 0.96303 0.98098 0.99388 0.92499 0.93045 0.91985 0.91132 0.89774 0.75231 0.90404 0.88646 0.88706 0.90632 0.90757 0.90791 0.89732 0.91540 0.90100 0.93284 0.92128 0.89362 0.96322 0.93660 0.92746 0.96405 0.91703 0.92949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.52 37.16 0.32 -1.05 16 2 C -0.14 -1.36 5.46 -26.73 -0.15 -1.50 16 3 C 0.13 1.47 2.02 -69.08 -0.14 1.33 16 4 H 0.11 1.27 7.29 -51.93 -0.38 0.89 16 5 N -0.71 -7.29 4.90 -54.93 -0.27 -7.56 16 6 C 0.51 5.16 6.51 -10.99 -0.07 5.08 16 7 C -0.17 -1.04 10.39 36.01 0.37 -0.67 16 8 O -0.55 -7.16 14.24 5.56 0.08 -7.08 16 9 C 0.52 7.32 7.28 -10.99 -0.08 7.24 16 10 O -0.54 -9.30 16.17 5.56 0.09 -9.21 16 11 N -0.61 -8.21 3.33 -170.53 -0.57 -8.78 16 12 C 0.09 1.00 4.82 -2.32 -0.01 0.99 16 13 C -0.13 -1.44 6.00 -24.75 -0.15 -1.59 16 14 C -0.06 -0.82 0.53 -154.10 -0.08 -0.90 16 15 C 0.12 1.87 5.05 -3.31 -0.02 1.85 16 16 C -0.13 -2.20 4.78 -26.94 -0.13 -2.33 16 17 C 0.17 3.86 5.03 -3.65 -0.02 3.84 16 18 N -0.59 -14.23 2.98 -172.16 -0.51 -14.75 16 19 C -0.25 -6.75 9.57 -15.06 -0.14 -6.89 16 20 H 0.07 1.71 7.89 -52.49 -0.41 1.29 16 21 C 0.00 0.05 4.90 -17.43 -0.09 -0.04 16 22 N -0.90 -25.85 11.20 55.49 0.62 -25.22 16 23 Si 0.90 21.38 29.59 -169.99 -5.03 16.35 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 C 0.14 2.87 6.24 -3.64 -0.02 2.85 16 28 C -0.12 -1.88 4.70 -26.94 -0.13 -2.00 16 29 H 0.06 0.60 5.65 -51.93 -0.29 0.31 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.64 7.85 -51.93 -0.41 0.24 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.76 4.87 -51.93 -0.25 0.51 16 34 H 0.41 3.98 7.63 -40.82 -0.31 3.67 16 35 H 0.08 0.35 7.91 -51.93 -0.41 -0.06 16 36 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.74 6.59 -51.93 -0.34 0.40 16 39 H 0.07 0.64 7.40 -51.93 -0.38 0.25 16 40 H 0.07 0.78 8.01 -51.93 -0.42 0.37 16 41 H 0.08 0.87 8.01 -51.92 -0.42 0.45 16 42 H 0.07 1.11 7.59 -51.93 -0.39 0.71 16 43 H 0.08 1.53 6.08 -51.93 -0.32 1.21 16 44 H 0.05 0.77 7.47 -51.93 -0.39 0.39 16 45 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 46 H 0.09 2.28 6.02 -51.93 -0.31 1.97 16 47 H 0.02 0.46 6.53 -51.93 -0.34 0.12 16 48 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 49 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 50 H 0.02 0.37 7.47 -51.93 -0.39 -0.01 16 51 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 52 H 0.05 0.73 8.10 -51.93 -0.42 0.31 16 LS Contribution 388.99 15.07 5.86 5.86 Total: -1.00 -32.20 388.99 -8.93 -41.12 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -8.67 Total: 3.06 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: -0.53 Total: 6.20 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: -0.73 Total: -56.31 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: 0.17 Total: -16.29 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.20 -8.93 -41.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754561607.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.749 kcal (2) G-P(sol) polarization free energy of solvation -32.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds