Wall clock time and date at job start Tue Mar 31 2020 20:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47248 * 2 1 4 4 H 1.09005 * 109.47502 * 305.00025 * 3 2 1 5 5 N 1.46502 * 109.47156 * 64.99762 * 3 2 1 6 6 C 1.34771 * 120.00084 * 275.00262 * 5 3 2 7 7 C 1.50704 * 119.99785 * 180.02562 * 6 5 3 8 8 O 1.21279 * 120.00443 * 359.97438 * 6 5 3 9 9 C 1.50698 * 109.47553 * 185.00085 * 3 2 1 10 10 O 1.21272 * 120.00340 * 240.00194 * 9 3 2 11 11 N 1.34776 * 119.99945 * 59.99591 * 9 3 2 12 12 C 1.47485 * 125.66156 * 359.69502 * 11 9 3 13 13 C 1.55242 * 104.79064 * 155.92506 * 12 11 9 14 14 C 1.54507 * 101.43903 * 36.67094 * 13 12 11 15 15 C 1.47170 * 125.66555 * 180.02562 * 11 9 3 16 16 C 1.52272 * 110.20852 * 83.41816 * 14 13 12 17 17 C 1.53310 * 109.42464 * 182.20101 * 16 14 13 18 18 N 1.46927 * 108.70631 * 306.49634 * 17 16 14 19 19 C 1.36942 * 120.56251 * 234.21003 * 18 17 16 20 20 H 1.07992 * 120.00143 * 152.08204 * 19 18 17 21 21 C 1.38811 * 119.99808 * 332.07804 * 19 18 17 22 22 N 1.31625 * 120.00277 * 342.48914 * 21 19 18 23 23 Si 1.86802 * 119.99817 * 162.48422 * 21 19 18 24 24 H 1.48502 * 109.47038 * 94.33685 * 23 21 19 25 25 H 1.48502 * 109.47010 * 214.33551 * 23 21 19 26 26 H 1.48499 * 109.47362 * 334.33301 * 23 21 19 27 27 C 1.46931 * 118.87730 * 54.23062 * 18 17 16 28 28 C 1.52270 * 110.21007 * 206.60914 * 14 13 12 29 29 H 1.09003 * 109.47363 * 300.00381 * 1 2 3 30 30 H 1.09004 * 109.47536 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47359 * 60.00052 * 1 2 3 32 32 H 1.08996 * 109.46993 * 120.00088 * 2 1 3 33 33 H 1.09006 * 109.46978 * 240.00270 * 2 1 3 34 34 H 0.97002 * 119.99686 * 95.00222 * 5 3 2 35 35 H 1.08992 * 109.47152 * 359.97438 * 7 6 5 36 36 H 1.09006 * 109.47289 * 120.00221 * 7 6 5 37 37 H 1.09003 * 109.46705 * 239.99565 * 7 6 5 38 38 H 1.08991 * 110.35935 * 274.87928 * 12 11 9 39 39 H 1.09001 * 110.35249 * 37.16612 * 12 11 9 40 40 H 1.08992 * 111.20733 * 278.56892 * 13 12 11 41 41 H 1.09008 * 110.90934 * 154.63716 * 13 12 11 42 42 H 1.09005 * 109.90866 * 300.83968 * 15 11 9 43 43 H 1.09002 * 109.90790 * 61.90914 * 15 11 9 44 44 H 1.09006 * 109.48216 * 302.18813 * 16 14 13 45 45 H 1.08995 * 109.48178 * 62.21566 * 16 14 13 46 46 H 1.08999 * 109.60331 * 186.72677 * 17 16 14 47 47 H 1.09005 * 109.59726 * 66.25796 * 17 16 14 48 48 H 0.96998 * 119.99486 * 180.02562 * 22 21 19 49 49 H 1.08994 * 109.60374 * 185.99441 * 27 18 17 50 50 H 1.09003 * 109.72931 * 65.59618 * 27 18 17 51 51 H 1.08999 * 109.48138 * 297.76890 * 28 14 13 52 52 H 1.08999 * 109.48194 * 57.79928 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 7 1.6524 2.0975 1.2518 6 6 0.4352 2.6644 1.3669 7 6 0.0367 3.3387 2.6545 8 8 -0.3393 2.6327 0.4341 9 6 3.5419 1.4443 -0.1238 10 8 4.2216 1.9435 0.7476 11 7 4.1297 0.8911 -1.2031 12 6 3.4278 0.2469 -2.3289 13 6 4.4154 0.3491 -3.5224 14 6 5.7734 0.1427 -2.8149 15 6 5.5789 0.8235 -1.4507 16 6 6.0535 -1.3435 -2.6373 17 6 7.3770 -1.5267 -1.8856 18 7 8.4256 -0.7737 -2.5873 19 6 9.5805 -1.3932 -2.9842 20 1 10.1239 -1.0245 -3.8416 21 6 10.0529 -2.4950 -2.2844 22 7 9.6132 -2.7403 -1.0683 23 14 11.3125 -3.6298 -3.0688 24 1 12.6776 -3.2121 -2.6598 25 1 11.0673 -5.0249 -2.6230 26 1 11.1939 -3.5546 -4.5471 27 6 8.2141 0.6554 -2.8555 28 6 6.8851 0.8242 -3.6011 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 2.2719 2.1231 1.9978 35 1 0.8553 3.2672 3.3705 36 1 -0.1868 4.3879 2.4611 37 1 -0.8469 2.8483 3.0630 38 1 3.2167 -0.7969 -2.0968 39 1 2.5044 0.7801 -2.5549 40 1 4.3650 1.3310 -3.9929 41 1 4.2296 -0.4411 -4.2499 42 1 5.9987 1.8292 -1.4748 43 1 6.0622 0.2385 -0.6682 44 1 5.2449 -1.8001 -2.0663 45 1 6.1220 -1.8199 -3.6152 46 1 7.6404 -2.5841 -1.8611 47 1 7.2748 -1.1494 -0.8680 48 1 9.9437 -3.5101 -0.5793 49 1 9.0294 1.0366 -3.4704 50 1 8.1779 1.2049 -1.9148 51 1 6.9626 0.3703 -4.5891 52 1 6.6589 1.8854 -3.7053 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754561607.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:17 Heat of formation + Delta-G solvation = -73.309169 kcal Electronic energy + Delta-G solvation = -31118.674259 eV Core-core repulsion = 27117.563216 eV Total energy + Delta-G solvation = -4001.111042 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.96372 -40.86519 -39.66481 -37.46582 -36.46450 -34.86565 -33.62109 -32.72046 -31.64276 -30.65482 -30.58480 -29.01578 -27.36761 -25.95718 -24.48591 -23.85311 -22.90555 -22.16968 -21.53849 -20.75761 -19.74754 -18.70557 -18.30575 -17.72207 -17.27932 -16.97442 -16.81967 -16.66404 -16.05042 -15.72673 -15.45041 -15.26552 -15.04428 -14.85528 -14.67361 -14.46192 -14.35658 -13.89362 -13.78546 -13.68738 -13.35804 -13.32113 -13.10908 -12.99597 -12.92956 -12.88299 -12.75902 -12.57119 -12.44688 -12.33663 -12.17241 -11.93006 -11.82927 -11.80668 -11.46494 -11.07187 -11.04063 -10.95756 -10.92545 -10.51414 -10.16136 -9.74247 -8.65285 -7.86565 -5.31601 1.38675 1.46025 1.47585 1.56259 1.57646 1.73453 2.35422 2.51686 3.20518 3.28497 3.59667 3.63566 3.73105 3.80452 3.82370 3.91821 3.99583 4.21466 4.24696 4.33068 4.43859 4.45859 4.53720 4.54729 4.59960 4.66631 4.68288 4.70851 4.75193 4.83038 4.88352 4.94615 4.99176 5.03852 5.05749 5.08688 5.11982 5.13730 5.27501 5.30230 5.36043 5.39289 5.41945 5.43654 5.53318 5.66170 5.80080 6.39994 6.40283 6.49481 6.92188 7.16080 7.19547 7.88212 8.39244 9.19285 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022828 B = 0.002559 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.274703 B =10937.270854 C =11080.981302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.133 4.133 3 C 0.140 3.860 4 H 0.115 0.885 5 N -0.712 5.712 6 C 0.510 3.490 7 C -0.165 4.165 8 O -0.578 6.578 9 C 0.519 3.481 10 O -0.580 6.580 11 N -0.606 5.606 12 C 0.090 3.910 13 C -0.114 4.114 14 C -0.053 4.053 15 C 0.125 3.875 16 C -0.111 4.111 17 C 0.177 3.823 18 N -0.608 5.608 19 C -0.259 4.259 20 H 0.067 0.933 21 C -0.053 4.053 22 N -0.937 5.937 23 Si 0.965 3.035 24 H -0.289 1.289 25 H -0.293 1.293 26 H -0.267 1.267 27 C 0.137 3.863 28 C -0.105 4.105 29 H 0.045 0.955 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.097 0.903 34 H 0.413 0.587 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.088 0.912 39 H 0.104 0.896 40 H 0.090 0.910 41 H 0.106 0.894 42 H 0.055 0.945 43 H 0.041 0.959 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.051 0.949 47 H -0.012 1.012 48 H 0.248 0.752 49 H 0.052 0.948 50 H 0.004 0.996 51 H 0.071 0.929 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.388 8.127 -0.015 22.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.171 4.171 3 C 0.031 3.969 4 H 0.132 0.868 5 N -0.366 5.366 6 C 0.299 3.701 7 C -0.224 4.224 8 O -0.458 6.458 9 C 0.307 3.693 10 O -0.460 6.460 11 N -0.339 5.339 12 C -0.031 4.031 13 C -0.152 4.152 14 C -0.053 4.053 15 C 0.002 3.998 16 C -0.149 4.149 17 C 0.052 3.948 18 N -0.332 5.332 19 C -0.389 4.389 20 H 0.085 0.915 21 C -0.248 4.248 22 N -0.583 5.583 23 Si 0.794 3.206 24 H -0.216 1.216 25 H -0.219 1.219 26 H -0.192 1.192 27 C 0.012 3.988 28 C -0.144 4.144 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.115 0.885 34 H 0.250 0.750 35 H 0.113 0.887 36 H 0.122 0.878 37 H 0.126 0.874 38 H 0.106 0.894 39 H 0.122 0.878 40 H 0.109 0.891 41 H 0.124 0.876 42 H 0.074 0.926 43 H 0.059 0.941 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.069 0.931 47 H 0.006 0.994 48 H 0.057 0.943 49 H 0.071 0.929 50 H 0.022 0.978 51 H 0.090 0.910 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -21.559 8.292 -0.057 23.099 hybrid contribution 1.771 -0.704 0.657 2.016 sum -19.788 7.588 0.600 21.202 Atomic orbital electron populations 1.21697 0.93550 1.01529 1.02269 1.22051 0.97821 0.93072 1.04173 1.20737 0.88976 0.96788 0.90371 0.86785 1.46013 1.17395 1.57353 1.15851 1.21436 0.80318 0.77119 0.91181 1.21880 1.04744 1.02558 0.93219 1.90707 1.52024 1.60586 1.42449 1.20727 0.90746 0.77283 0.80508 1.90684 1.66351 1.47802 1.41162 1.48577 1.07778 1.56551 1.20976 1.22888 0.96636 0.98819 0.84745 1.22925 0.91249 1.04421 0.96618 1.20879 0.96431 0.95088 0.92949 1.21901 0.80547 0.99744 0.97595 1.21867 0.97376 0.94795 1.00911 1.20612 0.86586 0.96388 0.91239 1.44316 1.16302 1.04736 1.67802 1.19525 1.01504 1.10651 1.07267 0.91522 1.25795 1.00856 1.02811 0.95349 1.70210 1.47926 1.29435 1.10734 0.85293 0.78685 0.78094 0.78562 1.21600 1.21942 1.19169 1.21104 0.96608 0.84844 0.96288 1.21778 0.93772 1.00054 0.98812 0.93607 0.91758 0.92482 0.91677 0.88521 0.74980 0.88745 0.87781 0.87429 0.89400 0.87808 0.89112 0.87585 0.92647 0.94090 0.91622 0.91651 0.93050 0.99426 0.94260 0.92930 0.97842 0.91020 0.90227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 8.52 71.98 0.61 -1.70 16 2 C -0.13 -2.34 5.46 30.59 0.17 -2.18 16 3 C 0.14 2.92 2.02 44.24 0.09 3.01 16 4 H 0.11 2.37 7.29 -2.38 -0.02 2.35 16 5 N -0.71 -13.93 4.90 -446.10 -2.19 -16.12 16 6 C 0.51 9.58 6.51 87.66 0.57 10.15 16 7 C -0.16 -1.71 10.39 71.24 0.74 -0.97 16 8 O -0.58 -14.44 14.24 -3.03 -0.04 -14.49 16 9 C 0.52 14.19 7.28 87.66 0.64 14.83 16 10 O -0.58 -20.37 16.17 -3.01 -0.05 -20.41 16 11 N -0.61 -15.54 3.33 -811.84 -2.70 -18.24 16 12 C 0.09 1.57 4.82 86.96 0.42 1.99 16 13 C -0.11 -2.09 6.00 31.88 0.19 -1.90 16 14 C -0.05 -1.47 0.53 -51.92 -0.03 -1.50 16 15 C 0.12 3.97 5.05 86.49 0.44 4.40 16 16 C -0.11 -3.73 4.78 30.46 0.15 -3.58 16 17 C 0.18 8.38 5.03 86.40 0.43 8.81 16 18 N -0.61 -30.07 2.98 -698.60 -2.08 -32.16 16 19 C -0.26 -14.16 9.57 84.03 0.80 -13.35 16 20 H 0.07 3.54 7.89 -2.91 -0.02 3.52 16 21 C -0.05 -2.97 4.90 84.86 0.42 -2.55 16 22 N -0.94 -55.96 11.20 21.65 0.24 -55.72 16 23 Si 0.97 44.79 29.59 68.60 2.03 46.82 16 24 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 25 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 26 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 27 C 0.14 5.57 6.24 86.41 0.54 6.11 16 28 C -0.11 -3.15 4.70 30.46 0.14 -3.00 16 29 H 0.04 0.90 5.65 -2.39 -0.01 0.89 16 30 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.06 1.06 7.85 -2.39 -0.02 1.04 16 32 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.10 1.45 4.87 -2.38 -0.01 1.44 16 34 H 0.41 7.80 7.63 -92.71 -0.71 7.10 16 35 H 0.09 0.66 7.91 -2.39 -0.02 0.64 16 36 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 37 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.09 1.37 6.59 -2.39 -0.02 1.35 16 39 H 0.10 1.29 7.40 -2.39 -0.02 1.27 16 40 H 0.09 1.45 8.01 -2.39 -0.02 1.43 16 41 H 0.11 1.59 8.01 -2.38 -0.02 1.57 16 42 H 0.06 1.86 7.59 -2.38 -0.02 1.85 16 43 H 0.04 1.63 6.08 -2.39 -0.01 1.62 16 44 H 0.07 1.98 7.47 -2.38 -0.02 1.97 16 45 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 46 H 0.05 2.79 6.02 -2.39 -0.01 2.77 16 47 H -0.01 -0.64 6.53 -2.38 -0.02 -0.66 16 48 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 49 H 0.05 2.10 7.93 -2.39 -0.02 2.09 16 50 H 0.00 0.16 7.47 -2.39 -0.02 0.14 16 51 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 52 H 0.08 1.99 8.10 -2.39 -0.02 1.97 16 Total: -1.00 -73.96 388.99 1.74 -72.21 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: 0.22 Total: 19.53 kcal Atomic # 6 Polarization: 12.24 SS G_CDS: 6.32 Total: 18.56 kcal Atomic # 7 Polarization: -115.50 SS G_CDS: -6.73 Total: -122.23 kcal Atomic # 8 Polarization: -34.81 SS G_CDS: -0.09 Total: -34.90 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -73.96 1.74 -72.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754561607.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.094 kcal (2) G-P(sol) polarization free energy of solvation -73.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds