Wall clock time and date at job start Tue Mar 31 2020 20:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46878 * 2 1 4 4 H 1.08997 * 109.47057 * 54.76204 * 3 2 1 5 5 C 1.50701 * 109.47396 * 174.76792 * 3 2 1 6 6 O 1.21275 * 120.00607 * 100.57513 * 5 3 2 7 7 N 1.34778 * 119.99725 * 280.58140 * 5 3 2 8 8 C 1.47022 * 125.64839 * 355.02502 * 7 5 3 9 9 C 1.54319 * 107.27365 * 181.11179 * 8 7 5 10 10 C 1.55156 * 102.94314 * 22.18792 * 9 8 7 11 11 H 1.08997 * 111.00127 * 82.61591 * 10 9 8 12 12 C 1.52999 * 111.00636 * 206.42771 * 10 9 8 13 13 C 1.52994 * 109.47150 * 293.54721 * 12 10 9 14 14 N 1.46501 * 109.47511 * 179.97438 * 13 12 10 15 15 C 1.36931 * 120.00681 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99628 * 0.02562 * 15 14 13 17 17 C 1.38807 * 120.00282 * 180.02562 * 15 14 13 18 18 N 1.31619 * 120.00293 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 120.00068 * 180.27432 * 17 15 14 20 20 H 1.48498 * 109.47423 * 179.72384 * 19 17 15 21 21 H 1.48498 * 109.47275 * 299.72730 * 19 17 15 22 22 H 1.48512 * 109.46851 * 59.72509 * 19 17 15 23 23 C 1.47420 * 125.65019 * 175.08179 * 7 5 3 24 24 N 1.46508 * 109.46692 * 294.76245 * 3 2 1 25 25 C 1.46767 * 124.34462 * 120.00426 * 24 3 2 26 26 C 1.54480 * 105.47044 * 197.01595 * 25 24 3 27 27 C 1.54635 * 101.76289 * 334.58026 * 26 25 24 28 28 C 1.34412 * 124.35128 * 299.69980 * 24 3 2 29 29 O 1.21279 * 124.94398 * 359.57191 * 28 24 3 30 30 H 1.08996 * 109.47304 * 60.00341 * 1 2 3 31 31 H 1.09009 * 109.46586 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47015 * 299.99833 * 1 2 3 33 33 H 1.09007 * 109.47525 * 239.99882 * 2 1 3 34 34 H 1.08996 * 109.47304 * 119.99659 * 2 1 3 35 35 H 1.09001 * 109.88420 * 61.68619 * 8 7 5 36 36 H 1.09010 * 110.01051 * 300.59641 * 8 7 5 37 37 H 1.09005 * 110.71519 * 263.82930 * 9 8 7 38 38 H 1.09002 * 110.72476 * 140.55472 * 9 8 7 39 39 H 1.08997 * 109.47255 * 173.54695 * 12 10 9 40 40 H 1.09002 * 109.47301 * 53.54992 * 12 10 9 41 41 H 1.09004 * 109.47360 * 59.99683 * 13 12 10 42 42 H 1.08998 * 109.47591 * 299.99949 * 13 12 10 43 43 H 0.97005 * 119.99575 * 0.02562 * 14 13 12 44 44 H 0.96996 * 120.00097 * 179.97438 * 18 17 15 45 45 H 1.09005 * 110.36700 * 36.98139 * 23 7 5 46 46 H 1.08992 * 110.36795 * 274.66109 * 23 7 5 47 47 H 1.09000 * 110.24368 * 316.00925 * 25 24 3 48 48 H 1.08994 * 110.24592 * 77.92433 * 25 24 3 49 49 H 1.08998 * 110.97118 * 92.69891 * 26 25 24 50 50 H 1.09004 * 110.96560 * 216.42749 * 26 25 24 51 51 H 1.08997 * 110.48039 * 143.48053 * 27 26 25 52 52 H 1.08996 * 110.48788 * 265.98739 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6020 1.9827 0.8393 5 6 3.5414 1.4447 0.1296 6 8 4.2346 1.6068 -0.8522 7 7 4.1138 1.2662 1.3366 8 6 3.3988 1.1623 2.6171 9 6 4.4617 0.9929 3.7230 10 6 5.7409 1.5778 3.0680 11 1 5.7636 2.6639 3.1568 12 6 7.0006 0.9547 3.6727 13 6 7.1263 1.3780 5.1376 14 7 8.3322 0.7809 5.7168 15 6 8.6543 1.0211 7.0258 16 1 8.0190 1.6505 7.6314 17 6 9.7971 0.4558 7.5744 18 7 10.5710 -0.3117 6.8366 19 14 10.2324 0.7773 9.3624 20 1 11.4869 0.0595 9.7033 21 1 10.4239 2.2351 9.5708 22 1 9.1322 0.2929 10.2345 23 6 5.5606 1.1442 1.5918 24 7 1.6572 2.0957 -1.2543 25 6 0.8126 3.2930 -1.3403 26 6 0.3300 3.3524 -2.8066 27 6 1.4503 2.5777 -3.5388 28 6 2.0391 1.6790 -2.4738 29 8 2.7502 0.7204 -2.6891 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.7371 0.2962 2.6030 36 1 2.8195 2.0683 2.7954 37 1 4.6003 -0.0605 3.9665 38 1 4.1883 1.5624 4.6112 39 1 7.8759 1.2954 3.1197 40 1 6.9333 -0.1316 3.6129 41 1 6.2510 1.0373 5.6906 42 1 7.1936 2.4643 5.1974 43 1 8.9029 0.2159 5.1727 44 1 11.3699 -0.7064 7.2198 45 1 6.1196 1.8065 0.9309 46 1 5.8837 0.1119 1.4576 47 1 -0.0393 3.2028 -0.6663 48 1 1.3933 4.1825 -1.0965 49 1 -0.6307 2.8506 -2.9217 50 1 0.2742 4.3830 -3.1573 51 1 1.0345 1.9859 -4.3542 52 1 2.2067 3.2662 -3.9155 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754942239.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:16 Heat of formation + Delta-G solvation = -60.234601 kcal Electronic energy + Delta-G solvation = -29850.528402 eV Core-core repulsion = 25849.984316 eV Total energy + Delta-G solvation = -4000.544086 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.16447 -39.78545 -37.76223 -36.56185 -35.26286 -35.05523 -32.94222 -31.42690 -30.89823 -29.59278 -28.29357 -27.86894 -26.65427 -23.97134 -23.11280 -22.55839 -22.28863 -21.60479 -20.26692 -20.13085 -18.77041 -17.70300 -17.14876 -17.03412 -16.56357 -15.98480 -15.65650 -15.31567 -14.82852 -14.63734 -14.61521 -14.07517 -13.94049 -13.75753 -13.52415 -13.45129 -13.33806 -13.31002 -13.17336 -12.94395 -12.76679 -12.55354 -12.30804 -12.08886 -11.95253 -11.63631 -11.61367 -11.52418 -11.33999 -11.23839 -11.05528 -10.80376 -10.65694 -10.47608 -10.32324 -10.10097 -10.01625 -9.77027 -9.67850 -8.91729 -8.85677 -8.73353 -6.90929 -5.75148 -3.04042 2.29855 2.50157 2.57208 3.03223 3.44375 3.48419 3.49937 3.97477 4.05565 4.19804 4.37550 4.45811 4.50277 4.51266 4.58611 4.64003 4.70821 4.80209 4.88683 5.00531 5.03425 5.08029 5.14740 5.22746 5.27021 5.31189 5.39360 5.41489 5.53334 5.54701 5.55762 5.62152 5.68603 5.69370 5.82201 5.84414 5.86380 5.91255 6.08384 6.12139 6.22595 6.26861 6.36985 6.41084 6.84598 6.88418 6.89461 7.37738 7.69706 7.98166 8.13889 8.43880 9.54514 10.13499 10.47621 11.47722 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.029207 B = 0.001860 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.438491 B =15054.108699 C =15295.181847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.134 4.134 3 C 0.151 3.849 4 H 0.107 0.893 5 C 0.513 3.487 6 O -0.512 6.512 7 N -0.619 5.619 8 C 0.097 3.903 9 C -0.126 4.126 10 C -0.093 4.093 11 H 0.084 0.916 12 C -0.116 4.116 13 C 0.155 3.845 14 N -0.735 5.735 15 C -0.240 4.240 16 H 0.069 0.931 17 C -0.015 4.015 18 N -0.934 5.934 19 Si 0.908 3.092 20 H -0.291 1.291 21 H -0.286 1.286 22 H -0.286 1.286 23 C 0.111 3.889 24 N -0.612 5.612 25 C 0.104 3.896 26 C -0.130 4.130 27 C -0.155 4.155 28 C 0.523 3.477 29 O -0.504 6.504 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.019 0.981 42 H 0.016 0.984 43 H 0.384 0.616 44 H 0.256 0.744 45 H 0.077 0.923 46 H 0.070 0.930 47 H 0.079 0.921 48 H 0.070 0.930 49 H 0.082 0.918 50 H 0.090 0.910 51 H 0.100 0.900 52 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.907 7.087 -17.874 33.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.173 4.173 3 C 0.044 3.956 4 H 0.124 0.876 5 C 0.299 3.701 6 O -0.386 6.386 7 N -0.355 5.355 8 C -0.026 4.026 9 C -0.164 4.164 10 C -0.113 4.113 11 H 0.102 0.898 12 C -0.154 4.154 13 C 0.028 3.972 14 N -0.379 5.379 15 C -0.371 4.371 16 H 0.087 0.913 17 C -0.211 4.211 18 N -0.582 5.582 19 Si 0.739 3.261 20 H -0.217 1.217 21 H -0.213 1.213 22 H -0.213 1.213 23 C -0.011 4.011 24 N -0.348 5.348 25 C -0.019 4.019 26 C -0.167 4.167 27 C -0.196 4.196 28 C 0.310 3.690 29 O -0.377 6.377 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.037 0.963 42 H 0.034 0.966 43 H 0.217 0.783 44 H 0.065 0.935 45 H 0.095 0.905 46 H 0.088 0.912 47 H 0.097 0.903 48 H 0.088 0.912 49 H 0.101 0.899 50 H 0.109 0.891 51 H 0.118 0.882 52 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -27.168 6.683 -18.403 33.488 hybrid contribution 0.517 0.100 1.043 1.168 sum -26.651 6.783 -17.360 32.521 Atomic orbital electron populations 1.21700 0.94443 1.02174 1.01819 1.21842 0.97009 0.93992 1.04455 1.20791 0.91797 0.95882 0.87139 0.87558 1.20528 0.90415 0.77181 0.81946 1.90771 1.64131 1.47550 1.36174 1.48511 1.08348 1.72546 1.06059 1.22162 0.95855 1.01186 0.83427 1.22735 0.93812 1.02857 0.97016 1.22323 0.95290 1.00789 0.92877 0.89780 1.21667 0.95740 1.00597 0.97408 1.20616 0.90558 0.95718 0.90326 1.42375 1.25603 1.59140 1.10776 1.19180 1.05611 1.24698 0.87645 0.91271 1.24759 0.97845 1.00306 0.98217 1.69650 1.16193 1.36774 1.35613 0.86257 0.77453 0.77549 0.84848 1.21677 1.21291 1.21279 1.22340 0.80533 1.01735 0.96533 1.47998 1.51998 1.29517 1.05324 1.22099 0.94213 0.87550 0.98064 1.22566 0.98506 1.01936 0.93730 1.22326 0.99418 0.99628 0.98191 1.20724 0.79565 0.84775 0.83937 1.90737 1.35410 1.28103 1.83424 0.92589 0.92128 0.92552 0.89659 0.90246 0.91388 0.91544 0.89963 0.89550 0.91529 0.91560 0.96278 0.96586 0.78300 0.93455 0.90479 0.91160 0.90287 0.91186 0.89938 0.89137 0.88188 0.87913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 9.80 37.16 0.36 -0.53 16 2 C -0.13 -1.19 5.34 -26.73 -0.14 -1.33 16 3 C 0.15 1.42 2.11 -69.08 -0.15 1.27 16 4 H 0.11 0.70 7.40 -51.93 -0.38 0.31 16 5 C 0.51 6.85 6.99 -10.98 -0.08 6.77 16 6 O -0.51 -9.18 14.29 -16.02 -0.23 -9.41 16 7 N -0.62 -7.30 3.33 -170.52 -0.57 -7.87 16 8 C 0.10 0.83 6.20 -3.07 -0.02 0.81 16 9 C -0.13 -1.28 5.59 -24.90 -0.14 -1.42 16 10 C -0.09 -1.14 3.07 -88.47 -0.27 -1.41 16 11 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 12 C -0.12 -1.80 4.84 -26.73 -0.13 -1.93 16 13 C 0.16 3.04 6.11 -4.04 -0.02 3.01 16 14 N -0.73 -18.79 5.60 -59.91 -0.34 -19.12 16 15 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 16 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 17 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 18 N -0.93 -28.56 13.06 55.49 0.72 -27.83 16 19 Si 0.91 22.50 29.55 -169.99 -5.02 17.47 16 20 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 C 0.11 1.43 6.40 -2.53 -0.02 1.41 16 24 N -0.61 -5.63 2.22 -166.15 -0.37 -6.00 16 25 C 0.10 0.53 7.30 -3.12 -0.02 0.50 16 26 C -0.13 -0.49 7.18 -25.09 -0.18 -0.67 16 27 C -0.16 -1.08 6.86 -26.74 -0.18 -1.27 16 28 C 0.52 6.13 6.74 -10.86 -0.07 6.06 16 29 O -0.50 -8.37 14.69 -16.02 -0.24 -8.61 16 30 H 0.06 0.36 7.76 -51.93 -0.40 -0.04 16 31 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.08 1.03 6.66 -51.92 -0.35 0.69 16 34 H 0.08 0.64 6.90 -51.93 -0.36 0.28 16 35 H 0.07 0.49 6.92 -51.93 -0.36 0.13 16 36 H 0.07 0.46 7.96 -51.92 -0.41 0.04 16 37 H 0.08 0.88 8.01 -51.93 -0.42 0.46 16 38 H 0.09 0.82 8.13 -51.93 -0.42 0.39 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.07 1.05 8.11 -51.93 -0.42 0.62 16 41 H 0.02 0.37 7.51 -51.93 -0.39 -0.02 16 42 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.38 10.33 7.67 -40.82 -0.31 10.02 16 44 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 45 H 0.08 1.09 7.99 -51.93 -0.41 0.67 16 46 H 0.07 0.94 8.03 -51.93 -0.42 0.52 16 47 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 48 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 49 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 50 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 51 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 52 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 408.87 15.07 6.16 6.16 Total: -1.00 -37.45 408.87 -10.44 -47.88 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -9.26 Total: 3.51 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -1.31 Total: 3.81 kcal Atomic # 7 Polarization: -60.27 SS G_CDS: -0.55 Total: -60.82 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -0.46 Total: -18.02 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -37.45 -10.44 -47.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754942239.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.352 kcal (2) G-P(sol) polarization free energy of solvation -37.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds