Wall clock time and date at job start Tue Mar 31 2020 20:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46878 * 2 1 4 4 H 1.08997 * 109.47057 * 54.76204 * 3 2 1 5 5 C 1.50701 * 109.47396 * 174.76792 * 3 2 1 6 6 O 1.21275 * 120.00607 * 100.57513 * 5 3 2 7 7 N 1.34778 * 119.99725 * 280.58140 * 5 3 2 8 8 C 1.47022 * 125.64839 * 355.02502 * 7 5 3 9 9 C 1.54319 * 107.27365 * 181.11179 * 8 7 5 10 10 C 1.55156 * 102.94314 * 22.18792 * 9 8 7 11 11 H 1.08997 * 111.00127 * 82.61591 * 10 9 8 12 12 C 1.52999 * 111.00636 * 206.42771 * 10 9 8 13 13 C 1.52994 * 109.47150 * 293.54721 * 12 10 9 14 14 N 1.46501 * 109.47511 * 179.97438 * 13 12 10 15 15 C 1.36931 * 120.00681 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99628 * 0.02562 * 15 14 13 17 17 C 1.38807 * 120.00282 * 180.02562 * 15 14 13 18 18 N 1.31619 * 120.00293 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 120.00068 * 180.27432 * 17 15 14 20 20 H 1.48498 * 109.47423 * 179.72384 * 19 17 15 21 21 H 1.48498 * 109.47275 * 299.72730 * 19 17 15 22 22 H 1.48512 * 109.46851 * 59.72509 * 19 17 15 23 23 C 1.47420 * 125.65019 * 175.08179 * 7 5 3 24 24 N 1.46508 * 109.46692 * 294.76245 * 3 2 1 25 25 C 1.46767 * 124.34462 * 120.00426 * 24 3 2 26 26 C 1.54480 * 105.47044 * 197.01595 * 25 24 3 27 27 C 1.54635 * 101.76289 * 334.58026 * 26 25 24 28 28 C 1.34412 * 124.35128 * 299.69980 * 24 3 2 29 29 O 1.21279 * 124.94398 * 359.57191 * 28 24 3 30 30 H 1.08996 * 109.47304 * 60.00341 * 1 2 3 31 31 H 1.09009 * 109.46586 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47015 * 299.99833 * 1 2 3 33 33 H 1.09007 * 109.47525 * 239.99882 * 2 1 3 34 34 H 1.08996 * 109.47304 * 119.99659 * 2 1 3 35 35 H 1.09001 * 109.88420 * 61.68619 * 8 7 5 36 36 H 1.09010 * 110.01051 * 300.59641 * 8 7 5 37 37 H 1.09005 * 110.71519 * 263.82930 * 9 8 7 38 38 H 1.09002 * 110.72476 * 140.55472 * 9 8 7 39 39 H 1.08997 * 109.47255 * 173.54695 * 12 10 9 40 40 H 1.09002 * 109.47301 * 53.54992 * 12 10 9 41 41 H 1.09004 * 109.47360 * 59.99683 * 13 12 10 42 42 H 1.08998 * 109.47591 * 299.99949 * 13 12 10 43 43 H 0.97005 * 119.99575 * 0.02562 * 14 13 12 44 44 H 0.96996 * 120.00097 * 179.97438 * 18 17 15 45 45 H 1.09005 * 110.36700 * 36.98139 * 23 7 5 46 46 H 1.08992 * 110.36795 * 274.66109 * 23 7 5 47 47 H 1.09000 * 110.24368 * 316.00925 * 25 24 3 48 48 H 1.08994 * 110.24592 * 77.92433 * 25 24 3 49 49 H 1.08998 * 110.97118 * 92.69891 * 26 25 24 50 50 H 1.09004 * 110.96560 * 216.42749 * 26 25 24 51 51 H 1.08997 * 110.48039 * 143.48053 * 27 26 25 52 52 H 1.08996 * 110.48788 * 265.98739 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6020 1.9827 0.8393 5 6 3.5414 1.4447 0.1296 6 8 4.2346 1.6068 -0.8522 7 7 4.1138 1.2662 1.3366 8 6 3.3988 1.1623 2.6171 9 6 4.4617 0.9929 3.7230 10 6 5.7409 1.5778 3.0680 11 1 5.7636 2.6639 3.1568 12 6 7.0006 0.9547 3.6727 13 6 7.1263 1.3780 5.1376 14 7 8.3322 0.7809 5.7168 15 6 8.6543 1.0211 7.0258 16 1 8.0190 1.6505 7.6314 17 6 9.7971 0.4558 7.5744 18 7 10.5710 -0.3117 6.8366 19 14 10.2324 0.7773 9.3624 20 1 11.4869 0.0595 9.7033 21 1 10.4239 2.2351 9.5708 22 1 9.1322 0.2929 10.2345 23 6 5.5606 1.1442 1.5918 24 7 1.6572 2.0957 -1.2543 25 6 0.8126 3.2930 -1.3403 26 6 0.3300 3.3524 -2.8066 27 6 1.4503 2.5777 -3.5388 28 6 2.0391 1.6790 -2.4738 29 8 2.7502 0.7204 -2.6891 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.7371 0.2962 2.6030 36 1 2.8195 2.0683 2.7954 37 1 4.6003 -0.0605 3.9665 38 1 4.1883 1.5624 4.6112 39 1 7.8759 1.2954 3.1197 40 1 6.9333 -0.1316 3.6129 41 1 6.2510 1.0373 5.6906 42 1 7.1936 2.4643 5.1974 43 1 8.9029 0.2159 5.1727 44 1 11.3699 -0.7064 7.2198 45 1 6.1196 1.8065 0.9309 46 1 5.8837 0.1119 1.4576 47 1 -0.0393 3.2028 -0.6663 48 1 1.3933 4.1825 -1.0965 49 1 -0.6307 2.8506 -2.9217 50 1 0.2742 4.3830 -3.1573 51 1 1.0345 1.9859 -4.3542 52 1 2.2067 3.2662 -3.9155 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754942239.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:15 Heat of formation + Delta-G solvation = -84.354256 kcal Electronic energy + Delta-G solvation = -29851.574309 eV Core-core repulsion = 25849.984316 eV Total energy + Delta-G solvation = -4001.589993 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.96109 -40.67360 -38.83586 -37.40089 -36.83051 -35.87422 -34.49044 -32.59887 -31.97412 -30.60576 -29.44784 -28.43265 -27.72360 -25.65975 -24.13447 -23.27822 -23.09858 -22.69895 -21.27585 -21.14958 -19.62205 -19.11785 -18.51006 -17.88205 -17.23746 -16.95501 -16.68947 -16.41601 -16.17770 -15.81888 -15.38729 -15.27544 -15.23114 -14.97799 -14.58784 -14.48972 -14.27931 -14.16297 -13.94809 -13.81149 -13.48058 -13.37459 -13.32541 -13.08801 -12.90826 -12.85219 -12.74076 -12.43122 -12.36174 -12.23428 -12.16520 -12.00901 -11.95978 -11.79947 -11.64678 -11.55835 -11.50220 -11.04037 -10.90116 -10.61789 -9.71032 -9.66095 -8.99540 -7.94612 -5.24028 1.44713 1.47596 1.51240 1.56757 1.57485 1.83904 2.22108 2.56854 3.26752 3.38990 3.46836 3.58951 3.66571 3.68731 3.78449 3.85223 3.89752 4.07241 4.15953 4.18782 4.27636 4.33981 4.35147 4.42119 4.46381 4.58344 4.59511 4.68365 4.69298 4.74662 4.76884 4.82641 4.86354 4.87667 4.94570 5.04076 5.08988 5.10853 5.12778 5.20886 5.24070 5.29237 5.33195 5.37607 5.45635 5.50032 5.58401 6.19244 6.27581 6.45392 7.04570 7.30934 7.33130 8.10716 8.32302 9.29009 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.029207 B = 0.001860 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.438491 B =15054.108699 C =15295.181847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.130 4.130 3 C 0.153 3.847 4 H 0.148 0.852 5 C 0.503 3.497 6 O -0.570 6.570 7 N -0.618 5.618 8 C 0.096 3.904 9 C -0.123 4.123 10 C -0.081 4.081 11 H 0.090 0.910 12 C -0.104 4.104 13 C 0.155 3.845 14 N -0.752 5.752 15 C -0.246 4.246 16 H 0.079 0.921 17 C -0.081 4.081 18 N -0.972 5.972 19 Si 0.977 3.023 20 H -0.297 1.297 21 H -0.277 1.277 22 H -0.275 1.275 23 C 0.111 3.889 24 N -0.611 5.611 25 C 0.095 3.905 26 C -0.115 4.115 27 C -0.154 4.154 28 C 0.503 3.497 29 O -0.569 6.569 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.083 0.917 33 H 0.042 0.958 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.076 0.924 38 H 0.102 0.898 39 H 0.053 0.947 40 H 0.061 0.939 41 H 0.033 0.967 42 H 0.019 0.981 43 H 0.372 0.628 44 H 0.251 0.749 45 H 0.056 0.944 46 H 0.059 0.941 47 H 0.111 0.889 48 H 0.073 0.927 49 H 0.099 0.901 50 H 0.114 0.886 51 H 0.106 0.894 52 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.824 9.053 -16.199 36.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.168 4.168 3 C 0.046 3.954 4 H 0.165 0.835 5 C 0.291 3.709 6 O -0.448 6.448 7 N -0.352 5.352 8 C -0.025 4.025 9 C -0.161 4.161 10 C -0.101 4.101 11 H 0.109 0.891 12 C -0.142 4.142 13 C 0.029 3.971 14 N -0.394 5.394 15 C -0.377 4.377 16 H 0.097 0.903 17 C -0.273 4.273 18 N -0.623 5.623 19 Si 0.805 3.195 20 H -0.223 1.223 21 H -0.203 1.203 22 H -0.201 1.201 23 C -0.012 4.012 24 N -0.346 5.346 25 C -0.026 4.026 26 C -0.152 4.152 27 C -0.195 4.195 28 C 0.292 3.708 29 O -0.447 6.447 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.061 0.939 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.116 0.884 37 H 0.095 0.905 38 H 0.121 0.879 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.051 0.949 42 H 0.037 0.963 43 H 0.203 0.797 44 H 0.059 0.941 45 H 0.075 0.925 46 H 0.077 0.923 47 H 0.129 0.871 48 H 0.092 0.908 49 H 0.118 0.882 50 H 0.133 0.867 51 H 0.124 0.876 52 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -31.181 8.711 -16.684 36.420 hybrid contribution 1.736 -0.495 0.492 1.871 sum -29.444 8.215 -16.192 34.593 Atomic orbital electron populations 1.21659 0.91888 1.02711 1.03041 1.21791 0.99047 0.93273 1.02718 1.20941 0.88850 0.96911 0.88689 0.83508 1.21407 0.92142 0.75983 0.81359 1.90746 1.65718 1.50257 1.38126 1.48618 1.07908 1.71581 1.07090 1.22403 0.95441 1.03827 0.80848 1.22748 0.92756 1.02583 0.97989 1.22140 0.94849 1.00902 0.92229 0.89125 1.21499 0.97144 1.00422 0.95129 1.20790 0.88646 0.95367 0.92272 1.42663 1.27227 1.59315 1.10230 1.19642 1.05452 1.23810 0.88828 0.90296 1.25651 0.98198 1.00807 1.02648 1.69824 1.16667 1.38381 1.37448 0.85162 0.76933 0.77587 0.79780 1.22341 1.20315 1.20053 1.22179 0.81775 1.00614 0.96649 1.48222 1.51560 1.30237 1.04543 1.22463 0.94600 0.85789 0.99713 1.22616 0.97608 1.02899 0.92097 1.22372 1.00497 0.99181 0.97409 1.21629 0.78826 0.84434 0.85867 1.90690 1.38348 1.31038 1.84640 0.92739 0.92055 0.89781 0.93932 0.89546 0.89147 0.88354 0.90518 0.87923 0.92858 0.92069 0.94867 0.96331 0.79711 0.94059 0.92528 0.92277 0.87066 0.90824 0.88236 0.86726 0.87582 0.88055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.80 71.98 0.71 -0.60 16 2 C -0.13 -2.15 5.34 30.59 0.16 -1.99 16 3 C 0.15 2.61 2.11 44.25 0.09 2.70 16 4 H 0.15 1.25 7.40 -2.39 -0.02 1.24 16 5 C 0.50 13.46 6.99 87.66 0.61 14.07 16 6 O -0.57 -21.73 14.29 17.62 0.25 -21.48 16 7 N -0.62 -14.03 3.33 -811.80 -2.70 -16.73 16 8 C 0.10 1.33 6.20 86.73 0.54 1.87 16 9 C -0.12 -2.16 5.59 31.78 0.18 -1.98 16 10 C -0.08 -1.92 3.07 -9.40 -0.03 -1.94 16 11 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 12 C -0.10 -3.23 4.84 30.59 0.15 -3.08 16 13 C 0.16 5.94 6.11 86.38 0.53 6.47 16 14 N -0.75 -38.64 5.60 -343.46 -1.92 -40.56 16 15 C -0.25 -13.78 9.99 84.03 0.84 -12.94 16 16 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 17 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 18 N -0.97 -60.54 13.06 21.65 0.28 -60.26 16 19 Si 0.98 46.18 29.55 68.60 2.03 48.21 16 20 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 21 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 22 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 23 C 0.11 2.93 6.40 86.86 0.56 3.49 16 24 N -0.61 -10.44 2.22 -798.19 -1.77 -12.21 16 25 C 0.10 0.64 7.30 86.83 0.63 1.28 16 26 C -0.11 -0.49 7.18 31.65 0.23 -0.26 16 27 C -0.15 -2.06 6.86 30.59 0.21 -1.85 16 28 C 0.50 12.19 6.74 87.90 0.59 12.78 16 29 O -0.57 -20.59 14.69 17.61 0.26 -20.33 16 30 H 0.05 0.55 7.76 -2.39 -0.02 0.53 16 31 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.04 1.09 6.66 -2.38 -0.02 1.08 16 34 H 0.09 1.25 6.90 -2.39 -0.02 1.24 16 35 H 0.09 0.92 6.92 -2.39 -0.02 0.90 16 36 H 0.10 0.82 7.96 -2.38 -0.02 0.80 16 37 H 0.08 1.46 8.01 -2.38 -0.02 1.45 16 38 H 0.10 1.53 8.13 -2.39 -0.02 1.51 16 39 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.06 1.96 8.11 -2.39 -0.02 1.94 16 41 H 0.03 1.20 7.51 -2.38 -0.02 1.19 16 42 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.37 20.53 7.67 -92.70 -0.71 19.82 16 44 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 45 H 0.06 1.71 7.99 -2.38 -0.02 1.69 16 46 H 0.06 1.67 8.03 -2.39 -0.02 1.65 16 47 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 48 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 49 H 0.10 0.14 8.14 -2.39 -0.02 0.12 16 50 H 0.11 0.00 8.14 -2.38 -0.02 -0.02 16 51 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 52 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -87.50 408.87 3.07 -84.43 By element: Atomic # 1 Polarization: 24.99 SS G_CDS: 0.18 Total: 25.17 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: 6.46 Total: 13.77 kcal Atomic # 7 Polarization: -123.65 SS G_CDS: -6.11 Total: -129.76 kcal Atomic # 8 Polarization: -42.33 SS G_CDS: 0.51 Total: -41.82 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -87.50 3.07 -84.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754942239.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.075 kcal (2) G-P(sol) polarization free energy of solvation -87.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds