Wall clock time and date at job start Tue Mar 31 2020 20:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46787 * 2 1 4 4 H 1.08997 * 109.47797 * 303.92876 * 3 2 1 5 5 C 1.50702 * 109.46860 * 183.92677 * 3 2 1 6 6 O 1.21286 * 120.00276 * 259.50164 * 5 3 2 7 7 N 1.34773 * 119.99898 * 79.50214 * 5 3 2 8 8 C 1.47026 * 125.64856 * 175.00347 * 7 5 3 9 9 C 1.54323 * 107.27127 * 181.01445 * 8 7 5 10 10 C 1.55161 * 102.94152 * 22.19285 * 9 8 7 11 11 H 1.09008 * 110.99918 * 82.60998 * 10 9 8 12 12 C 1.52994 * 111.00357 * 206.42071 * 10 9 8 13 13 C 1.52997 * 109.47610 * 293.54794 * 12 10 9 14 14 N 1.46499 * 109.47382 * 179.97438 * 13 12 10 15 15 C 1.36943 * 119.99940 * 180.02562 * 14 13 12 16 16 H 1.07994 * 120.00095 * 359.97438 * 15 14 13 17 17 C 1.38813 * 119.99665 * 180.02562 * 15 14 13 18 18 N 1.31610 * 120.00199 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99713 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47210 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47486 * 119.99355 * 19 17 15 22 22 H 1.48504 * 109.46837 * 239.99721 * 19 17 15 23 23 C 1.47427 * 125.65068 * 354.95427 * 7 5 3 24 24 N 1.46500 * 109.46943 * 63.93261 * 3 2 1 25 25 C 1.46770 * 124.34946 * 239.72103 * 24 3 2 26 26 C 1.54659 * 105.38206 * 162.85463 * 25 24 3 27 27 C 1.54620 * 101.68564 * 25.76552 * 26 25 24 28 28 C 1.34424 * 124.35291 * 60.02142 * 24 3 2 29 29 O 1.21286 * 124.93926 * 0.42673 * 28 24 3 30 30 H 1.09000 * 109.47360 * 59.99426 * 1 2 3 31 31 H 1.08997 * 109.46941 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46959 * 299.99428 * 1 2 3 33 33 H 1.09003 * 109.46959 * 240.00572 * 2 1 3 34 34 H 1.08992 * 109.47392 * 120.00227 * 2 1 3 35 35 H 1.09000 * 109.87808 * 61.60178 * 8 7 5 36 36 H 1.08998 * 110.01267 * 300.50859 * 8 7 5 37 37 H 1.08996 * 110.72067 * 263.83058 * 9 8 7 38 38 H 1.08996 * 110.71938 * 140.55785 * 9 8 7 39 39 H 1.09002 * 109.47053 * 53.55268 * 12 10 9 40 40 H 1.08997 * 109.47151 * 173.54625 * 12 10 9 41 41 H 1.09002 * 109.47300 * 300.00323 * 13 12 10 42 42 H 1.09001 * 109.46696 * 60.00118 * 13 12 10 43 43 H 0.97000 * 120.00191 * 0.02562 * 14 13 12 44 44 H 0.97006 * 119.99822 * 180.02562 * 18 17 15 45 45 H 1.09001 * 110.36343 * 37.07779 * 23 7 5 46 46 H 1.09001 * 110.36722 * 274.75687 * 23 7 5 47 47 H 1.09001 * 110.24534 * 281.98483 * 25 24 3 48 48 H 1.09005 * 110.24240 * 43.98102 * 25 24 3 49 49 H 1.09004 * 111.18905 * 267.59551 * 26 25 24 50 50 H 1.08999 * 110.85425 * 143.79660 * 26 25 24 51 51 H 1.09002 * 110.48678 * 216.31002 * 27 26 25 52 52 H 1.09006 * 110.59924 * 93.72289 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6203 1.9764 -0.8526 5 6 3.5438 1.4437 -0.0973 6 8 4.2159 1.6119 0.8982 7 7 4.1420 1.2578 -1.2906 8 6 5.5877 1.3381 -1.5462 9 6 5.8016 1.0808 -3.0527 10 6 4.4191 1.4298 -3.6646 11 1 4.3212 2.5042 -3.8210 12 6 4.1882 0.6654 -4.9696 13 6 5.1787 1.1533 -6.0287 14 7 4.9580 0.4208 -7.2781 15 6 5.7328 0.6889 -8.3750 16 1 6.5062 1.4406 -8.3191 17 6 5.5233 -0.0048 -9.5590 18 7 4.5804 -0.9204 -9.6272 19 14 6.5806 0.3604 -11.0550 20 1 7.5619 1.4235 -10.7201 21 1 7.3039 -0.8708 -11.4625 22 1 5.7161 0.8193 -12.1719 23 6 3.4553 0.9392 -2.5557 24 7 1.6304 2.1052 1.2407 25 6 0.7891 3.3064 1.2993 26 6 0.2703 3.3732 2.7548 27 6 1.3747 2.6047 3.5165 28 6 1.9817 1.6947 2.4716 29 8 2.6835 0.7345 2.7097 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 6.1099 0.5798 -0.9628 36 1 5.9585 2.3287 -1.2830 37 1 6.0505 0.0352 -3.2338 38 1 6.5759 1.7370 -3.4499 39 1 4.3363 -0.4007 -4.7973 40 1 3.1699 0.8392 -5.3172 41 1 5.0307 2.2194 -6.2010 42 1 6.1971 0.9794 -5.6811 43 1 4.2631 -0.2540 -7.3284 44 1 4.4342 -1.4054 -10.4545 45 1 2.5056 1.4707 -2.6160 46 1 3.2955 -0.1357 -2.6403 47 1 1.3795 4.1922 1.0653 48 1 -0.0470 3.2154 0.6058 49 1 -0.6926 2.8719 2.8533 50 1 0.2068 4.4061 3.0970 51 1 0.9418 2.0189 4.3275 52 1 2.1247 3.2946 3.9036 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754942241.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:22 Heat of formation + Delta-G solvation = -60.599480 kcal Electronic energy + Delta-G solvation = -29985.360799 eV Core-core repulsion = 25984.800890 eV Total energy + Delta-G solvation = -4000.559909 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.15464 -39.78851 -37.78681 -36.54378 -35.18249 -35.10587 -32.91531 -31.38658 -30.97322 -29.86665 -27.89246 -27.48837 -27.16663 -24.03004 -23.12608 -22.44907 -22.27361 -21.60910 -20.46388 -19.94013 -18.79015 -17.69714 -17.20151 -16.98525 -16.53258 -16.06799 -15.76433 -15.19593 -14.75269 -14.68068 -14.55353 -14.07218 -13.92810 -13.71641 -13.55029 -13.41642 -13.34136 -13.28649 -13.16665 -12.92610 -12.90220 -12.64106 -12.17724 -12.02305 -11.92570 -11.72953 -11.54391 -11.44750 -11.30272 -11.26228 -11.07390 -10.84900 -10.67969 -10.52387 -10.36322 -10.10669 -9.98597 -9.76041 -9.70284 -8.92748 -8.89239 -8.72374 -6.93729 -5.78554 -3.07125 2.29859 2.51622 2.58632 3.03488 3.41915 3.47608 3.49810 3.98571 4.07053 4.21223 4.39942 4.40564 4.50504 4.55523 4.59310 4.70253 4.70563 4.82574 4.92408 5.04510 5.09001 5.14025 5.17536 5.27137 5.28581 5.33463 5.36127 5.43418 5.49637 5.55434 5.55709 5.60709 5.70637 5.73213 5.75202 5.81900 5.91147 5.94620 6.05701 6.11377 6.21440 6.27039 6.32849 6.35039 6.80821 6.85523 6.90384 7.36353 7.68837 7.98138 8.14197 8.40700 9.51753 10.10124 10.44194 11.44481 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.025161 B = 0.001964 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.569034 B =14251.583248 C =14661.726106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.135 4.135 3 C 0.150 3.850 4 H 0.109 0.891 5 C 0.514 3.486 6 O -0.515 6.515 7 N -0.618 5.618 8 C 0.109 3.891 9 C -0.127 4.127 10 C -0.093 4.093 11 H 0.085 0.915 12 C -0.116 4.116 13 C 0.154 3.846 14 N -0.735 5.735 15 C -0.238 4.238 16 H 0.071 0.929 17 C -0.016 4.016 18 N -0.934 5.934 19 Si 0.907 3.093 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.292 1.292 23 C 0.100 3.900 24 N -0.611 5.611 25 C 0.103 3.897 26 C -0.129 4.129 27 C -0.155 4.155 28 C 0.523 3.477 29 O -0.505 6.505 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.017 0.983 42 H 0.020 0.980 43 H 0.383 0.617 44 H 0.254 0.746 45 H 0.075 0.925 46 H 0.074 0.926 47 H 0.070 0.930 48 H 0.080 0.920 49 H 0.083 0.917 50 H 0.090 0.910 51 H 0.099 0.901 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.046 8.766 25.117 29.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.174 4.174 3 C 0.043 3.957 4 H 0.126 0.874 5 C 0.300 3.700 6 O -0.389 6.389 7 N -0.354 5.354 8 C -0.013 4.013 9 C -0.165 4.165 10 C -0.113 4.113 11 H 0.104 0.896 12 C -0.154 4.154 13 C 0.027 3.973 14 N -0.379 5.379 15 C -0.370 4.370 16 H 0.089 0.911 17 C -0.212 4.212 18 N -0.582 5.582 19 Si 0.738 3.262 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.023 4.023 24 N -0.347 5.347 25 C -0.020 4.020 26 C -0.167 4.167 27 C -0.196 4.196 28 C 0.310 3.690 29 O -0.379 6.379 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.035 0.965 42 H 0.038 0.962 43 H 0.217 0.783 44 H 0.064 0.936 45 H 0.093 0.907 46 H 0.093 0.907 47 H 0.088 0.912 48 H 0.098 0.902 49 H 0.101 0.899 50 H 0.108 0.892 51 H 0.118 0.882 52 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -11.178 8.396 25.737 29.289 hybrid contribution 0.374 0.049 -1.124 1.185 sum -10.805 8.445 24.613 28.176 Atomic orbital electron populations 1.21697 0.94394 1.02230 1.01840 1.21854 0.97151 0.93923 1.04452 1.20804 0.91496 0.95886 0.87519 0.87357 1.20542 0.90312 0.77197 0.81930 1.90762 1.65588 1.48039 1.34527 1.48515 1.08326 1.70522 1.08021 1.21948 0.80898 1.01682 0.96767 1.22757 0.97949 1.03267 0.92487 1.22323 0.94027 1.00941 0.94001 0.89635 1.21673 1.00796 0.99718 0.93190 1.20623 0.95555 0.94831 0.86331 1.42379 1.42249 1.45712 1.07553 1.19278 1.11476 1.16678 0.89541 0.91148 1.24752 0.99219 0.99072 0.98110 1.69666 1.34388 1.27503 1.26692 0.86116 0.79546 0.77379 0.83155 1.20556 1.21853 1.21869 1.22538 0.96263 1.00818 0.82693 1.47995 1.52266 1.29191 1.05277 1.22146 0.94199 0.87403 0.98214 1.22597 0.98502 1.01938 0.93695 1.22326 0.99433 0.99546 0.98257 1.20730 0.79575 0.84862 0.83810 1.90730 1.36010 1.28197 1.82918 0.92446 0.92094 0.92655 0.90159 0.89720 0.91588 0.91686 0.90062 0.89592 0.91532 0.91519 0.96534 0.96216 0.78333 0.93566 0.90701 0.90732 0.91155 0.90193 0.89875 0.89171 0.88233 0.87937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.79 37.16 0.36 -0.66 16 2 C -0.14 -1.28 5.29 -26.73 -0.14 -1.42 16 3 C 0.15 1.47 2.06 -69.08 -0.14 1.33 16 4 H 0.11 0.79 6.95 -51.93 -0.36 0.43 16 5 C 0.51 6.86 6.99 -10.99 -0.08 6.78 16 6 O -0.52 -9.06 14.42 -15.91 -0.23 -9.29 16 7 N -0.62 -7.29 3.33 -170.52 -0.57 -7.85 16 8 C 0.11 1.29 6.87 -3.06 -0.02 1.26 16 9 C -0.13 -1.41 5.59 -24.89 -0.14 -1.54 16 10 C -0.09 -1.04 3.07 -88.48 -0.27 -1.31 16 11 H 0.09 0.93 8.14 -51.92 -0.42 0.51 16 12 C -0.12 -1.63 4.84 -26.74 -0.13 -1.76 16 13 C 0.15 2.91 6.11 -4.04 -0.02 2.89 16 14 N -0.73 -18.27 5.60 -59.91 -0.34 -18.61 16 15 C -0.24 -6.63 9.99 -15.06 -0.15 -6.79 16 16 H 0.07 1.91 7.83 -52.49 -0.41 1.49 16 17 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 18 N -0.93 -28.05 13.06 55.49 0.72 -27.33 16 19 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 C 0.10 0.97 5.48 -2.53 -0.01 0.96 16 24 N -0.61 -5.78 2.16 -166.04 -0.36 -6.14 16 25 C 0.10 0.56 7.31 -3.02 -0.02 0.54 16 26 C -0.13 -0.52 7.19 -25.01 -0.18 -0.70 16 27 C -0.16 -1.09 6.86 -26.75 -0.18 -1.28 16 28 C 0.52 6.17 6.75 -10.86 -0.07 6.10 16 29 O -0.51 -8.37 14.71 -15.91 -0.23 -8.61 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.39 7.72 -51.93 -0.40 -0.01 16 33 H 0.08 0.71 7.08 -51.93 -0.37 0.34 16 34 H 0.08 1.06 6.68 -51.93 -0.35 0.71 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.94 8.01 -51.93 -0.42 0.52 16 38 H 0.09 0.92 8.13 -51.93 -0.42 0.50 16 39 H 0.07 0.96 8.11 -51.93 -0.42 0.54 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.02 0.38 7.51 -51.93 -0.39 -0.01 16 43 H 0.38 9.97 7.67 -40.82 -0.31 9.66 16 44 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 45 H 0.07 0.58 6.92 -51.93 -0.36 0.22 16 46 H 0.07 0.71 7.71 -51.93 -0.40 0.31 16 47 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 48 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 49 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 50 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 51 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 52 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 408.31 15.07 6.15 6.15 Total: -1.00 -36.78 408.31 -10.41 -47.20 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -9.24 Total: 3.35 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: -1.30 Total: 3.87 kcal Atomic # 7 Polarization: -59.39 SS G_CDS: -0.54 Total: -59.92 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: -0.46 Total: -17.90 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.78 -10.41 -47.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754942241.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.404 kcal (2) G-P(sol) polarization free energy of solvation -36.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds