Wall clock time and date at job start Tue Mar 31 2020 20:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46787 * 2 1 4 4 H 1.08997 * 109.47797 * 303.92876 * 3 2 1 5 5 C 1.50702 * 109.46860 * 183.92677 * 3 2 1 6 6 O 1.21286 * 120.00276 * 259.50164 * 5 3 2 7 7 N 1.34773 * 119.99898 * 79.50214 * 5 3 2 8 8 C 1.47026 * 125.64856 * 175.00347 * 7 5 3 9 9 C 1.54323 * 107.27127 * 181.01445 * 8 7 5 10 10 C 1.55161 * 102.94152 * 22.19285 * 9 8 7 11 11 H 1.09008 * 110.99918 * 82.60998 * 10 9 8 12 12 C 1.52994 * 111.00357 * 206.42071 * 10 9 8 13 13 C 1.52997 * 109.47610 * 293.54794 * 12 10 9 14 14 N 1.46499 * 109.47382 * 179.97438 * 13 12 10 15 15 C 1.36943 * 119.99940 * 180.02562 * 14 13 12 16 16 H 1.07994 * 120.00095 * 359.97438 * 15 14 13 17 17 C 1.38813 * 119.99665 * 180.02562 * 15 14 13 18 18 N 1.31610 * 120.00199 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99713 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47210 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47486 * 119.99355 * 19 17 15 22 22 H 1.48504 * 109.46837 * 239.99721 * 19 17 15 23 23 C 1.47427 * 125.65068 * 354.95427 * 7 5 3 24 24 N 1.46500 * 109.46943 * 63.93261 * 3 2 1 25 25 C 1.46770 * 124.34946 * 239.72103 * 24 3 2 26 26 C 1.54659 * 105.38206 * 162.85463 * 25 24 3 27 27 C 1.54620 * 101.68564 * 25.76552 * 26 25 24 28 28 C 1.34424 * 124.35291 * 60.02142 * 24 3 2 29 29 O 1.21286 * 124.93926 * 0.42673 * 28 24 3 30 30 H 1.09000 * 109.47360 * 59.99426 * 1 2 3 31 31 H 1.08997 * 109.46941 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46959 * 299.99428 * 1 2 3 33 33 H 1.09003 * 109.46959 * 240.00572 * 2 1 3 34 34 H 1.08992 * 109.47392 * 120.00227 * 2 1 3 35 35 H 1.09000 * 109.87808 * 61.60178 * 8 7 5 36 36 H 1.08998 * 110.01267 * 300.50859 * 8 7 5 37 37 H 1.08996 * 110.72067 * 263.83058 * 9 8 7 38 38 H 1.08996 * 110.71938 * 140.55785 * 9 8 7 39 39 H 1.09002 * 109.47053 * 53.55268 * 12 10 9 40 40 H 1.08997 * 109.47151 * 173.54625 * 12 10 9 41 41 H 1.09002 * 109.47300 * 300.00323 * 13 12 10 42 42 H 1.09001 * 109.46696 * 60.00118 * 13 12 10 43 43 H 0.97000 * 120.00191 * 0.02562 * 14 13 12 44 44 H 0.97006 * 119.99822 * 180.02562 * 18 17 15 45 45 H 1.09001 * 110.36343 * 37.07779 * 23 7 5 46 46 H 1.09001 * 110.36722 * 274.75687 * 23 7 5 47 47 H 1.09001 * 110.24534 * 281.98483 * 25 24 3 48 48 H 1.09005 * 110.24240 * 43.98102 * 25 24 3 49 49 H 1.09004 * 111.18905 * 267.59551 * 26 25 24 50 50 H 1.08999 * 110.85425 * 143.79660 * 26 25 24 51 51 H 1.09002 * 110.48678 * 216.31002 * 27 26 25 52 52 H 1.09006 * 110.59924 * 93.72289 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6203 1.9764 -0.8526 5 6 3.5438 1.4437 -0.0973 6 8 4.2159 1.6119 0.8982 7 7 4.1420 1.2578 -1.2906 8 6 5.5877 1.3381 -1.5462 9 6 5.8016 1.0808 -3.0527 10 6 4.4191 1.4298 -3.6646 11 1 4.3212 2.5042 -3.8210 12 6 4.1882 0.6654 -4.9696 13 6 5.1787 1.1533 -6.0287 14 7 4.9580 0.4208 -7.2781 15 6 5.7328 0.6889 -8.3750 16 1 6.5062 1.4406 -8.3191 17 6 5.5233 -0.0048 -9.5590 18 7 4.5804 -0.9204 -9.6272 19 14 6.5806 0.3604 -11.0550 20 1 7.5619 1.4235 -10.7201 21 1 7.3039 -0.8708 -11.4625 22 1 5.7161 0.8193 -12.1719 23 6 3.4553 0.9392 -2.5557 24 7 1.6304 2.1052 1.2407 25 6 0.7891 3.3064 1.2993 26 6 0.2703 3.3732 2.7548 27 6 1.3747 2.6047 3.5165 28 6 1.9817 1.6947 2.4716 29 8 2.6835 0.7345 2.7097 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 6.1099 0.5798 -0.9628 36 1 5.9585 2.3287 -1.2830 37 1 6.0505 0.0352 -3.2338 38 1 6.5759 1.7370 -3.4499 39 1 4.3363 -0.4007 -4.7973 40 1 3.1699 0.8392 -5.3172 41 1 5.0307 2.2194 -6.2010 42 1 6.1971 0.9794 -5.6811 43 1 4.2631 -0.2540 -7.3284 44 1 4.4342 -1.4054 -10.4545 45 1 2.5056 1.4707 -2.6160 46 1 3.2955 -0.1357 -2.6403 47 1 1.3795 4.1922 1.0653 48 1 -0.0470 3.2154 0.6058 49 1 -0.6926 2.8719 2.8533 50 1 0.2068 4.4061 3.0970 51 1 0.9418 2.0189 4.3275 52 1 2.1247 3.2946 3.9036 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754942241.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:21 Heat of formation + Delta-G solvation = -83.673589 kcal Electronic energy + Delta-G solvation = -29986.361367 eV Core-core repulsion = 25984.800890 eV Total energy + Delta-G solvation = -4001.560477 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.96719 -40.67334 -38.84228 -37.39308 -36.78908 -35.86772 -34.44410 -32.57369 -31.96550 -31.00927 -28.75277 -28.44326 -28.02123 -25.71909 -24.14928 -23.18980 -23.12969 -22.71302 -21.37606 -20.95644 -19.65282 -19.10536 -18.50814 -17.90685 -17.26395 -16.93490 -16.71536 -16.54215 -16.02157 -15.77961 -15.36028 -15.24697 -15.20699 -15.03848 -14.58977 -14.44950 -14.30014 -14.15518 -13.87732 -13.80362 -13.72060 -13.35372 -13.25739 -13.06998 -12.94481 -12.81714 -12.72210 -12.41944 -12.34140 -12.16393 -12.12954 -12.03031 -11.95854 -11.80352 -11.64313 -11.56388 -11.46953 -11.03014 -10.90444 -10.61139 -9.77667 -9.62811 -8.96694 -7.94281 -5.22241 1.43107 1.48581 1.48948 1.57829 1.59003 1.83733 2.21409 2.57109 3.25032 3.39871 3.46626 3.49833 3.66252 3.77605 3.79546 3.84293 3.91011 4.07874 4.15942 4.19033 4.24383 4.31472 4.39060 4.44060 4.49466 4.57013 4.63371 4.68203 4.69285 4.74746 4.78558 4.86195 4.87661 4.91271 4.95032 5.02574 5.03287 5.10700 5.11772 5.21245 5.24126 5.27804 5.32190 5.43332 5.50110 5.53136 5.57705 6.19713 6.29411 6.41908 7.03071 7.30678 7.35389 8.13546 8.35086 9.29488 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.025161 B = 0.001964 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.569034 B =14251.583248 C =14661.726106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.130 4.130 3 C 0.150 3.850 4 H 0.144 0.856 5 C 0.506 3.494 6 O -0.567 6.567 7 N -0.617 5.617 8 C 0.109 3.891 9 C -0.122 4.122 10 C -0.083 4.083 11 H 0.096 0.904 12 C -0.100 4.100 13 C 0.150 3.850 14 N -0.749 5.749 15 C -0.243 4.243 16 H 0.075 0.925 17 C -0.078 4.078 18 N -0.969 5.969 19 Si 0.971 3.029 20 H -0.267 1.267 21 H -0.294 1.294 22 H -0.293 1.293 23 C 0.102 3.898 24 N -0.611 5.611 25 C 0.095 3.905 26 C -0.115 4.115 27 C -0.153 4.153 28 C 0.504 3.496 29 O -0.568 6.568 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.085 0.915 34 H 0.045 0.955 35 H 0.051 0.949 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.020 0.980 42 H 0.021 0.979 43 H 0.374 0.626 44 H 0.251 0.749 45 H 0.106 0.894 46 H 0.079 0.921 47 H 0.075 0.925 48 H 0.108 0.892 49 H 0.098 0.902 50 H 0.115 0.885 51 H 0.106 0.894 52 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.935 10.831 24.741 30.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.169 4.169 3 C 0.043 3.957 4 H 0.162 0.838 5 C 0.294 3.706 6 O -0.445 6.445 7 N -0.351 5.351 8 C -0.013 4.013 9 C -0.159 4.159 10 C -0.103 4.103 11 H 0.114 0.886 12 C -0.139 4.139 13 C 0.024 3.976 14 N -0.392 5.392 15 C -0.375 4.375 16 H 0.093 0.907 17 C -0.270 4.270 18 N -0.620 5.620 19 Si 0.801 3.199 20 H -0.191 1.191 21 H -0.222 1.222 22 H -0.220 1.220 23 C -0.020 4.020 24 N -0.345 5.345 25 C -0.026 4.026 26 C -0.152 4.152 27 C -0.194 4.194 28 C 0.293 3.707 29 O -0.447 6.447 30 H 0.099 0.901 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.104 0.896 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.108 0.892 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.038 0.962 42 H 0.039 0.961 43 H 0.206 0.794 44 H 0.060 0.940 45 H 0.124 0.876 46 H 0.098 0.902 47 H 0.093 0.907 48 H 0.126 0.874 49 H 0.117 0.883 50 H 0.133 0.867 51 H 0.124 0.876 52 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -13.089 10.523 25.352 30.410 hybrid contribution 1.021 -0.571 -0.966 1.517 sum -12.069 9.952 24.385 28.971 Atomic orbital electron populations 1.21657 0.92154 1.02671 1.02922 1.21794 0.98945 0.93382 1.02777 1.20939 0.88981 0.96712 0.89059 0.83831 1.21301 0.91845 0.76093 0.81399 1.90739 1.66988 1.50499 1.36268 1.48607 1.08387 1.69643 1.08461 1.21908 0.81313 1.01124 0.96985 1.22707 0.98361 1.03023 0.91850 1.22196 0.94227 1.01069 0.92777 0.88585 1.21488 0.99668 0.99658 0.93053 1.20827 0.96977 0.94401 0.85385 1.42628 1.41624 1.46037 1.08887 1.19674 1.11308 1.15992 0.90519 0.90730 1.25559 1.00876 0.99533 1.01046 1.69808 1.36212 1.28826 1.27145 0.85099 0.78063 0.77216 0.79552 1.19097 1.22171 1.21968 1.22640 0.96877 1.01608 0.80889 1.48212 1.51868 1.29911 1.04491 1.22500 0.94492 0.85721 0.99922 1.22644 0.97661 1.02993 0.91928 1.22371 1.00397 0.99056 0.97527 1.21631 0.78866 0.84562 0.85600 1.90685 1.38865 1.31030 1.84085 0.90093 0.92086 0.92673 0.89637 0.93660 0.93059 0.91837 0.90656 0.89153 0.91962 0.90874 0.96187 0.96124 0.79396 0.94023 0.87575 0.90246 0.90696 0.87377 0.88342 0.86684 0.87594 0.87830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.79 71.98 0.70 -0.91 16 2 C -0.13 -2.35 5.29 30.60 0.16 -2.19 16 3 C 0.15 2.72 2.06 44.25 0.09 2.81 16 4 H 0.14 1.52 6.95 -2.39 -0.02 1.51 16 5 C 0.51 13.45 6.99 87.66 0.61 14.06 16 6 O -0.57 -20.89 14.42 17.47 0.25 -20.64 16 7 N -0.62 -13.97 3.33 -811.79 -2.70 -16.67 16 8 C 0.11 2.56 6.87 86.73 0.60 3.16 16 9 C -0.12 -2.57 5.59 31.78 0.18 -2.39 16 10 C -0.08 -1.65 3.07 -9.41 -0.03 -1.68 16 11 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 12 C -0.10 -2.64 4.84 30.59 0.15 -2.49 16 13 C 0.15 5.47 6.11 86.38 0.53 6.00 16 14 N -0.75 -36.83 5.60 -343.45 -1.92 -38.76 16 15 C -0.24 -13.37 9.99 84.03 0.84 -12.53 16 16 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 17 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 18 N -0.97 -58.54 13.06 21.65 0.28 -58.26 16 19 Si 0.97 45.63 29.55 68.60 2.03 47.66 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 21 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 22 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 23 C 0.10 1.72 5.48 86.85 0.48 2.19 16 24 N -0.61 -10.75 2.16 -797.81 -1.72 -12.47 16 25 C 0.09 0.72 7.31 86.89 0.64 1.36 16 26 C -0.11 -0.54 7.19 31.71 0.23 -0.32 16 27 C -0.15 -2.02 6.86 30.58 0.21 -1.81 16 28 C 0.50 12.14 6.75 87.90 0.59 12.74 16 29 O -0.57 -20.27 14.71 17.47 0.26 -20.01 16 30 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.05 0.66 7.72 -2.39 -0.02 0.64 16 33 H 0.09 1.40 7.08 -2.39 -0.02 1.38 16 34 H 0.04 1.20 6.68 -2.39 -0.02 1.18 16 35 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.07 1.70 8.01 -2.39 -0.02 1.68 16 38 H 0.09 1.84 8.13 -2.39 -0.02 1.82 16 39 H 0.06 1.71 8.11 -2.39 -0.02 1.69 16 40 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.02 0.76 7.51 -2.39 -0.02 0.74 16 43 H 0.37 19.46 7.67 -92.71 -0.71 18.75 16 44 H 0.25 14.67 8.31 -92.70 -0.77 13.90 16 45 H 0.11 1.18 6.92 -2.39 -0.02 1.16 16 46 H 0.08 1.32 7.71 -2.39 -0.02 1.30 16 47 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 48 H 0.11 0.26 8.14 -2.38 -0.02 0.24 16 49 H 0.10 0.21 8.14 -2.38 -0.02 0.19 16 50 H 0.11 0.04 8.14 -2.39 -0.02 0.02 16 51 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 52 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 Total: -1.00 -83.84 408.31 3.10 -80.74 By element: Atomic # 1 Polarization: 24.20 SS G_CDS: 0.19 Total: 24.39 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: 6.44 Total: 14.02 kcal Atomic # 7 Polarization: -120.09 SS G_CDS: -6.06 Total: -126.16 kcal Atomic # 8 Polarization: -41.16 SS G_CDS: 0.51 Total: -40.65 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -83.84 3.10 -80.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754942241.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.932 kcal (2) G-P(sol) polarization free energy of solvation -83.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds