Wall clock time and date at job start Tue Mar 31 2020 20:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47293 * 2 1 4 4 H 1.08998 * 109.47737 * 306.53055 * 3 2 1 5 5 N 1.46508 * 109.46720 * 66.53089 * 3 2 1 6 6 C 1.34774 * 120.00126 * 274.99831 * 5 3 2 7 7 C 1.50696 * 120.00218 * 179.97438 * 6 5 3 8 8 O 1.21285 * 119.99636 * 359.97438 * 6 5 3 9 9 C 1.50695 * 109.47344 * 186.52677 * 3 2 1 10 10 O 1.21279 * 120.00579 * 257.82933 * 9 3 2 11 11 N 1.34783 * 119.99950 * 77.82704 * 9 3 2 12 12 C 1.46942 * 120.72075 * 175.01165 * 11 9 3 13 13 C 1.53185 * 108.90398 * 234.30656 * 12 11 9 14 14 C 1.53182 * 109.27728 * 304.61809 * 13 12 11 15 15 C 1.52062 * 109.73126 * 59.92565 * 14 13 12 16 16 C 1.54574 * 110.67872 * 64.31430 * 15 14 13 17 17 C 1.54473 * 102.76054 * 152.61323 * 16 15 14 18 18 N 1.47079 * 107.42562 * 338.69193 * 17 16 15 19 19 C 1.36938 * 125.63225 * 178.94929 * 18 17 16 20 20 H 1.07997 * 120.00070 * 174.80847 * 19 18 17 21 21 C 1.38814 * 119.99631 * 354.80232 * 19 18 17 22 22 N 1.31614 * 120.00131 * 7.50900 * 21 19 18 23 23 Si 1.86803 * 119.99665 * 187.50832 * 21 19 18 24 24 H 1.48501 * 109.47247 * 94.98917 * 23 21 19 25 25 H 1.48509 * 109.46766 * 214.98388 * 23 21 19 26 26 H 1.48497 * 109.47156 * 334.98377 * 23 21 19 27 27 C 1.47573 * 108.74313 * 358.92948 * 18 17 16 28 28 C 1.47098 * 120.71625 * 354.99094 * 11 9 3 29 29 H 1.08998 * 109.46988 * 299.99534 * 1 2 3 30 30 H 1.08999 * 109.47142 * 59.99556 * 1 2 3 31 31 H 1.09000 * 109.47656 * 179.97438 * 1 2 3 32 32 H 1.09011 * 109.46739 * 240.00326 * 2 1 3 33 33 H 1.08994 * 109.47221 * 120.01186 * 2 1 3 34 34 H 0.97002 * 119.99787 * 95.00303 * 5 3 2 35 35 H 1.09004 * 109.46854 * 60.00102 * 7 6 5 36 36 H 1.08999 * 109.47126 * 179.97438 * 7 6 5 37 37 H 1.09000 * 109.47129 * 300.00161 * 7 6 5 38 38 H 1.09000 * 109.56733 * 114.47740 * 12 11 9 39 39 H 1.09006 * 109.65903 * 354.19416 * 12 11 9 40 40 H 1.08993 * 109.50425 * 184.67197 * 13 12 11 41 41 H 1.09009 * 109.50056 * 64.55513 * 13 12 11 42 42 H 1.08997 * 109.42234 * 299.84323 * 14 13 12 43 43 H 1.08997 * 109.38097 * 179.97438 * 14 13 12 44 44 H 1.08999 * 110.71403 * 34.34268 * 16 15 14 45 45 H 1.08996 * 110.86292 * 270.95368 * 16 15 14 46 46 H 1.09006 * 109.87644 * 219.19537 * 17 16 15 47 47 H 1.08998 * 109.88037 * 98.19211 * 17 16 15 48 48 H 0.96998 * 120.00034 * 179.97438 * 22 21 19 49 49 H 1.09002 * 110.37978 * 142.11553 * 27 18 17 50 50 H 1.09001 * 110.37934 * 264.46164 * 27 18 17 51 51 H 1.09003 * 109.56409 * 7.97162 * 28 11 9 52 52 H 1.08997 * 109.56547 * 247.61828 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5845 1.9890 -0.8257 5 7 1.6841 2.0861 1.2671 6 6 0.4702 2.6519 1.4179 7 6 0.1039 3.3135 2.7214 8 8 -0.3274 2.6285 0.5045 9 6 3.5383 1.4455 -0.1615 10 8 4.2517 1.6291 0.8019 11 7 4.0855 1.2442 -1.3767 12 6 5.5378 1.3517 -1.5731 13 6 5.8134 2.3500 -2.7018 14 6 5.0551 1.9136 -3.9592 15 6 3.5627 1.8731 -3.6706 16 6 3.0308 3.2878 -3.3465 17 6 1.5510 3.2039 -3.7816 18 7 1.4354 2.0927 -4.7382 19 6 0.2791 1.6776 -5.3431 20 1 0.3111 0.9041 -6.0960 21 6 -0.9342 2.2511 -4.9882 22 7 -0.9597 3.2915 -4.1825 23 14 -2.5307 1.5462 -5.6543 24 1 -3.0985 0.5902 -4.6699 25 1 -3.4984 2.6480 -5.8891 26 1 -2.2646 0.8402 -6.9333 27 6 2.7715 1.4991 -4.9391 28 6 3.2419 0.9116 -2.5349 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5140 0.8898 34 1 2.3222 2.1052 1.9974 35 1 0.8006 4.1269 2.9243 36 1 -0.9088 3.7110 2.6550 37 1 0.1553 2.5815 3.5274 38 1 5.9431 0.3761 -1.8415 39 1 6.0073 1.7015 -0.6536 40 1 6.8825 2.3755 -2.9121 41 1 5.4774 3.3422 -2.4002 42 1 5.3932 0.9221 -4.2606 43 1 5.2496 2.6231 -4.7634 44 1 3.5616 4.0417 -3.9278 45 1 3.1080 3.4965 -2.2795 46 1 1.2517 4.1368 -4.2594 47 1 0.9197 3.0129 -2.9138 48 1 -1.8075 3.6925 -3.9348 49 1 2.6953 0.4158 -5.0333 50 1 3.2472 1.9251 -5.8225 51 1 2.1913 1.0078 -2.2608 52 1 3.4457 -0.1107 -2.8534 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755078719.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:16 Heat of formation + Delta-G solvation = -71.751611 kcal Electronic energy + Delta-G solvation = -32725.686472 eV Core-core repulsion = 28724.642971 eV Total energy + Delta-G solvation = -4001.043501 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.07024 -40.75374 -39.71262 -37.27013 -36.48456 -34.70440 -33.94114 -33.19762 -31.61389 -30.63802 -30.38174 -28.37168 -27.35504 -26.29100 -25.33196 -23.33815 -22.75112 -22.05981 -21.47285 -20.82872 -19.63692 -18.72978 -18.49413 -17.82366 -17.19362 -16.97167 -16.77373 -16.50923 -16.19050 -15.88055 -15.65441 -15.15101 -15.05408 -14.88704 -14.63855 -14.37446 -14.07869 -13.97771 -13.85998 -13.55033 -13.48129 -13.34665 -13.33460 -13.04550 -12.95393 -12.90996 -12.78943 -12.57101 -12.35590 -12.12494 -12.00846 -11.96861 -11.89788 -11.77344 -11.59777 -11.23388 -11.17672 -10.93139 -10.83779 -10.65327 -10.15231 -9.68105 -8.84091 -7.81581 -5.14844 1.32150 1.43587 1.46298 1.54393 1.65490 1.75415 2.34584 2.50893 3.19154 3.37543 3.62916 3.67955 3.78011 3.83752 3.90346 3.93470 3.97157 4.12569 4.25512 4.26842 4.34412 4.41177 4.45988 4.53350 4.58159 4.61953 4.64526 4.72829 4.75876 4.84912 4.89191 4.90087 4.92113 4.97662 5.01373 5.04771 5.07888 5.12723 5.18760 5.32344 5.37832 5.42260 5.47413 5.51288 5.53804 5.65604 5.80380 6.20892 6.22041 6.54014 6.92435 7.12741 7.29121 7.82776 8.47331 9.28255 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008610 B = 0.005997 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3251.207098 B = 4668.209426 C = 6930.106215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.117 4.117 3 C 0.126 3.874 4 H 0.079 0.921 5 N -0.707 5.707 6 C 0.496 3.504 7 C -0.161 4.161 8 O -0.580 6.580 9 C 0.523 3.477 10 O -0.562 6.562 11 N -0.595 5.595 12 C 0.109 3.891 13 C -0.125 4.125 14 C -0.096 4.096 15 C -0.072 4.072 16 C -0.114 4.114 17 C 0.192 3.808 18 N -0.621 5.621 19 C -0.236 4.236 20 H 0.086 0.914 21 C -0.063 4.063 22 N -0.943 5.943 23 Si 0.965 3.035 24 H -0.293 1.293 25 H -0.300 1.300 26 H -0.261 1.261 27 C 0.143 3.857 28 C 0.126 3.874 29 H 0.051 0.949 30 H 0.024 0.976 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.417 0.583 35 H 0.109 0.891 36 H 0.087 0.913 37 H 0.117 0.883 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.106 0.894 41 H 0.051 0.949 42 H 0.088 0.912 43 H 0.072 0.928 44 H 0.068 0.932 45 H 0.052 0.948 46 H -0.008 1.008 47 H 0.004 0.996 48 H 0.241 0.759 49 H 0.053 0.947 50 H 0.031 0.969 51 H 0.068 0.932 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.681 -5.660 11.030 19.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.155 4.155 3 C 0.017 3.983 4 H 0.097 0.903 5 N -0.363 5.363 6 C 0.285 3.715 7 C -0.220 4.220 8 O -0.459 6.459 9 C 0.310 3.690 10 O -0.442 6.442 11 N -0.327 5.327 12 C -0.012 4.012 13 C -0.163 4.163 14 C -0.134 4.134 15 C -0.074 4.074 16 C -0.152 4.152 17 C 0.067 3.933 18 N -0.347 5.347 19 C -0.365 4.365 20 H 0.104 0.896 21 C -0.256 4.256 22 N -0.592 5.592 23 Si 0.795 3.205 24 H -0.220 1.220 25 H -0.228 1.228 26 H -0.186 1.186 27 C 0.018 3.982 28 C 0.003 3.997 29 H 0.070 0.930 30 H 0.043 0.957 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.256 0.744 35 H 0.127 0.873 36 H 0.106 0.894 37 H 0.135 0.865 38 H 0.111 0.889 39 H 0.103 0.897 40 H 0.124 0.876 41 H 0.070 0.930 42 H 0.106 0.894 43 H 0.090 0.910 44 H 0.087 0.913 45 H 0.070 0.930 46 H 0.010 0.990 47 H 0.022 0.978 48 H 0.050 0.950 49 H 0.071 0.929 50 H 0.049 0.951 51 H 0.087 0.913 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 14.304 -5.534 10.870 18.798 hybrid contribution -1.495 0.358 -0.307 1.568 sum 12.809 -5.176 10.563 17.390 Atomic orbital electron populations 1.21658 0.95047 1.01120 1.01292 1.21823 0.96685 0.93301 1.03736 1.20765 0.91787 0.96523 0.89228 0.90273 1.45767 1.17015 1.58017 1.15484 1.21743 0.80823 0.77512 0.91386 1.21910 1.04627 1.02715 0.92750 1.90872 1.50817 1.59602 1.44587 1.20411 0.89811 0.75701 0.83066 1.90614 1.63217 1.51548 1.38832 1.48123 1.08944 1.68033 1.07552 1.21829 0.78335 1.01076 0.99974 1.21903 1.01898 0.98315 0.94215 1.21318 0.90755 1.03289 0.98006 1.21380 0.96848 0.94336 0.94834 1.22638 0.95878 0.97181 0.99488 1.20797 0.91790 0.89441 0.91299 1.44744 1.03679 1.35725 1.50565 1.19389 0.84437 1.16431 1.16251 0.89588 1.25582 1.00701 0.98685 1.00667 1.70208 1.24168 1.24163 1.40653 0.85243 0.80088 0.77077 0.78119 1.22006 1.22764 1.18577 1.21670 0.84653 0.97073 0.94805 1.21634 0.94480 0.98795 0.84764 0.92959 0.95669 0.91479 0.90169 0.89398 0.74432 0.87301 0.89381 0.86478 0.88920 0.89662 0.87605 0.93050 0.89384 0.90960 0.91330 0.92951 0.98971 0.97776 0.95014 0.92857 0.95147 0.91328 0.88853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.48 8.55 71.98 0.62 -3.87 16 2 C -0.12 -3.34 5.23 30.59 0.16 -3.18 16 3 C 0.13 4.00 1.79 44.24 0.08 4.08 16 4 H 0.08 3.28 6.34 -2.39 -0.02 3.27 16 5 N -0.71 -19.69 5.00 -446.10 -2.23 -21.92 16 6 C 0.50 15.14 6.58 87.66 0.58 15.72 16 7 C -0.16 -3.00 10.32 71.23 0.74 -2.26 16 8 O -0.58 -24.89 14.23 -3.04 -0.04 -24.93 16 9 C 0.52 15.43 6.97 87.65 0.61 16.04 16 10 O -0.56 -17.57 15.34 -3.03 -0.05 -17.62 16 11 N -0.60 -15.54 2.60 -820.28 -2.13 -17.67 16 12 C 0.11 2.17 6.39 86.36 0.55 2.73 16 13 C -0.13 -2.29 5.92 30.72 0.18 -2.11 16 14 C -0.10 -2.01 4.64 30.35 0.14 -1.87 16 15 C -0.07 -2.18 0.55 -51.84 -0.03 -2.21 16 16 C -0.11 -4.23 4.92 31.63 0.16 -4.08 16 17 C 0.19 9.79 4.96 86.77 0.43 10.22 16 18 N -0.62 -31.20 3.39 -692.74 -2.35 -33.54 16 19 C -0.24 -13.17 10.26 84.03 0.86 -12.31 16 20 H 0.09 4.53 7.84 -2.91 -0.02 4.51 16 21 C -0.06 -3.69 5.48 84.86 0.46 -3.22 16 22 N -0.94 -59.84 10.36 21.65 0.22 -59.62 16 23 Si 0.97 47.55 29.56 68.60 2.03 49.57 16 24 H -0.29 -14.46 7.11 99.48 0.71 -13.76 16 25 H -0.30 -15.08 7.11 99.48 0.71 -14.38 16 26 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 27 C 0.14 5.32 6.15 86.55 0.53 5.85 16 28 C 0.13 3.65 4.02 86.01 0.35 3.99 16 29 H 0.05 1.76 5.61 -2.39 -0.01 1.75 16 30 H 0.02 1.06 7.93 -2.39 -0.02 1.04 16 31 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.08 2.21 6.62 -2.38 -0.02 2.19 16 33 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.42 9.56 7.73 -92.71 -0.72 8.84 16 35 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.09 1.76 8.12 -2.39 -0.02 1.74 16 37 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.08 1.82 7.04 -2.38 -0.02 1.81 16 40 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.05 1.14 7.42 -2.38 -0.02 1.12 16 42 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.07 1.51 8.10 -2.39 -0.02 1.49 16 44 H 0.07 2.40 7.99 -2.39 -0.02 2.38 16 45 H 0.05 1.96 7.70 -2.39 -0.02 1.94 16 46 H -0.01 -0.47 7.60 -2.38 -0.02 -0.49 16 47 H 0.00 0.24 7.30 -2.39 -0.02 0.22 16 48 H 0.24 15.22 8.31 -92.71 -0.77 14.45 16 49 H 0.05 1.85 8.01 -2.39 -0.02 1.83 16 50 H 0.03 1.11 8.00 -2.39 -0.02 1.09 16 51 H 0.07 2.52 4.59 -2.39 -0.01 2.51 16 52 H 0.09 2.29 8.12 -2.39 -0.02 2.27 16 Total: -1.00 -78.44 391.89 2.07 -76.38 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: 0.20 Total: 25.82 kcal Atomic # 6 Polarization: 17.11 SS G_CDS: 6.41 Total: 23.53 kcal Atomic # 7 Polarization: -126.27 SS G_CDS: -6.48 Total: -132.75 kcal Atomic # 8 Polarization: -42.46 SS G_CDS: -0.09 Total: -42.55 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 2.03 Total: 49.57 kcal Total: -78.44 2.07 -76.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755078719.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.624 kcal (2) G-P(sol) polarization free energy of solvation -78.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds