Wall clock time and date at job start Tue Mar 31 2020 20:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46909 * 2 1 4 4 H 1.09008 * 109.47009 * 54.41081 * 3 2 1 5 5 N 1.46499 * 109.47250 * 294.41677 * 3 2 1 6 6 C 1.34774 * 120.00550 * 84.99589 * 5 3 2 7 7 C 1.50700 * 120.00236 * 179.97438 * 6 5 3 8 8 O 1.21288 * 119.99669 * 0.02562 * 6 5 3 9 9 C 1.50691 * 109.47300 * 174.41071 * 3 2 1 10 10 O 1.21287 * 120.00118 * 111.30494 * 9 3 2 11 11 N 1.34784 * 120.00203 * 291.30490 * 9 3 2 12 12 C 1.46932 * 120.69835 * 176.86628 * 11 9 3 13 13 C 1.53190 * 109.02024 * 125.77879 * 12 11 9 14 14 C 1.53403 * 109.15009 * 55.16287 * 13 12 11 15 15 C 1.52239 * 109.70543 * 299.88561 * 14 13 12 16 16 C 1.54482 * 110.29274 * 182.00638 * 15 14 13 17 17 C 1.55032 * 101.52921 * 153.33959 * 16 15 14 18 18 N 1.47486 * 104.90706 * 323.66300 * 17 16 15 19 19 C 1.36940 * 125.66021 * 204.03801 * 18 17 16 20 20 H 1.07996 * 119.99758 * 179.97438 * 19 18 17 21 21 C 1.38808 * 120.00139 * 359.96572 * 19 18 17 22 22 N 1.31623 * 119.99976 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99859 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47069 * 60.00429 * 23 21 19 25 25 H 1.48503 * 109.46698 * 179.97438 * 23 21 19 26 26 H 1.48492 * 109.47162 * 300.00266 * 23 21 19 27 27 C 1.47181 * 108.67501 * 24.00834 * 18 17 16 28 28 C 1.47072 * 120.69722 * 356.84736 * 11 9 3 29 29 H 1.09010 * 109.46826 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47106 * 299.99157 * 1 2 3 31 31 H 1.08993 * 109.47374 * 59.99849 * 1 2 3 32 32 H 1.09001 * 109.47106 * 240.00843 * 2 1 3 33 33 H 1.09000 * 109.47724 * 119.99928 * 2 1 3 34 34 H 0.97006 * 119.99371 * 264.99789 * 5 3 2 35 35 H 1.09004 * 109.46903 * 0.02562 * 7 6 5 36 36 H 1.08999 * 109.46619 * 119.99876 * 7 6 5 37 37 H 1.08998 * 109.46908 * 239.99962 * 7 6 5 38 38 H 1.09000 * 109.55790 * 245.66947 * 12 11 9 39 39 H 1.08999 * 109.55891 * 5.89172 * 12 11 9 40 40 H 1.08992 * 109.50307 * 175.20268 * 13 12 11 41 41 H 1.09003 * 109.50047 * 295.32399 * 13 12 11 42 42 H 1.09003 * 109.41256 * 179.81773 * 14 13 12 43 43 H 1.09008 * 109.39057 * 59.94060 * 14 13 12 44 44 H 1.08995 * 111.01767 * 271.40039 * 16 15 14 45 45 H 1.09001 * 111.01485 * 35.28043 * 16 15 14 46 46 H 1.08992 * 110.35730 * 204.80089 * 17 16 15 47 47 H 1.09005 * 110.43863 * 82.55861 * 17 16 15 48 48 H 0.97001 * 119.99705 * 179.97438 * 22 21 19 49 49 H 1.09007 * 109.91480 * 239.09964 * 27 18 17 50 50 H 1.09005 * 109.91095 * 117.83353 * 27 18 17 51 51 H 1.09004 * 109.58280 * 352.27069 * 28 11 9 52 52 H 1.09003 * 109.58104 * 112.53384 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5971 1.9845 0.8358 5 7 1.6644 2.0933 -1.2577 6 6 0.4483 2.6597 -1.3866 7 6 0.0623 3.3296 -2.6801 8 8 -0.3351 2.6311 -0.4611 9 6 3.5405 1.4449 0.1384 10 8 4.2348 1.7955 -0.7923 11 7 4.1111 1.0574 1.2963 12 6 5.5731 0.9883 1.4259 13 6 6.0071 1.8224 2.6352 14 6 5.2522 1.3361 3.8790 15 6 3.7535 1.4964 3.6651 16 6 2.9819 1.0573 4.9294 17 6 1.6865 1.9008 4.8103 18 7 2.1240 3.1900 4.2432 19 6 1.4687 4.3849 4.3777 20 1 1.8731 5.2768 3.9225 21 6 0.2845 4.4496 5.0990 22 7 -0.2083 3.3626 5.6540 23 14 -0.6098 6.0794 5.2818 24 1 -0.9791 6.5948 3.9390 25 1 -1.8394 5.8812 6.0907 26 1 0.2776 7.0575 5.9606 27 6 3.3823 2.9793 3.5092 28 6 3.2835 0.6952 2.4569 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8900 34 1 2.2912 2.1164 -1.9977 35 1 0.8879 3.2557 -3.3880 36 1 -0.8172 2.8377 -3.0956 37 1 -0.1631 4.3794 -2.4925 38 1 5.8782 -0.0483 1.5690 39 1 6.0385 1.3845 0.5234 40 1 7.0800 1.7083 2.7898 41 1 5.7742 2.8720 2.4558 42 1 5.5604 1.9248 4.7431 43 1 5.4833 0.2854 4.0548 44 1 2.7580 -0.0090 4.9001 45 1 3.5341 1.3145 5.8333 46 1 1.2402 2.0510 5.7933 47 1 0.9757 1.4145 4.1422 48 1 -1.0356 3.4079 6.1584 49 1 4.1682 3.6051 3.9323 50 1 3.2415 3.2179 2.4550 51 1 2.2394 0.9281 2.2479 52 1 3.3863 -0.3707 2.6605 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755078720.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:20 Heat of formation + Delta-G solvation = -47.833562 kcal Electronic energy + Delta-G solvation = -32491.380569 eV Core-core repulsion = 28491.374232 eV Total energy + Delta-G solvation = -4000.006337 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.87729 -39.53485 -38.35845 -35.78483 -35.30247 -33.24926 -32.60758 -31.96239 -30.08638 -29.69688 -28.42201 -27.18445 -25.70132 -25.11885 -23.80589 -22.19818 -21.61453 -20.40387 -20.17001 -19.57440 -18.21995 -17.49121 -16.88487 -16.63774 -16.06393 -15.74390 -15.31886 -15.13870 -14.85826 -14.45071 -14.08121 -13.91719 -13.88791 -13.50064 -13.31109 -13.06217 -13.02301 -12.64662 -12.56119 -12.41486 -12.21308 -12.14290 -11.93918 -11.82667 -11.53499 -11.41828 -11.13765 -11.03858 -10.86948 -10.85763 -10.80412 -10.69189 -10.18649 -10.10737 -9.93982 -9.73703 -9.72103 -9.59770 -9.45335 -8.97701 -8.59519 -8.55777 -6.78647 -5.60496 -3.01383 2.54634 2.74645 2.85564 3.41488 3.45190 3.49630 3.50697 4.36768 4.54360 4.81664 4.88188 4.92229 5.00258 5.03575 5.09949 5.11655 5.15515 5.27133 5.38551 5.40166 5.48588 5.54887 5.56233 5.64567 5.66381 5.76682 5.79293 5.80518 5.89748 5.91974 5.96618 5.99346 6.01514 6.16685 6.23250 6.32168 6.38018 6.41582 6.53811 6.55358 6.58112 6.64580 6.75640 6.88250 7.37522 7.51607 7.59091 7.66724 7.88605 8.10122 8.35310 8.40353 9.27148 9.88030 10.52113 11.43453 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008297 B = 0.005681 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3373.844138 B = 4927.650602 C = 7035.547903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.127 4.127 3 C 0.123 3.877 4 H 0.123 0.877 5 N -0.714 5.714 6 C 0.507 3.493 7 C -0.168 4.168 8 O -0.527 6.527 9 C 0.521 3.479 10 O -0.550 6.550 11 N -0.599 5.599 12 C 0.113 3.887 13 C -0.136 4.136 14 C -0.101 4.101 15 C -0.086 4.086 16 C -0.134 4.134 17 C 0.152 3.848 18 N -0.601 5.601 19 C -0.221 4.221 20 H 0.073 0.927 21 C -0.008 4.008 22 N -0.921 5.921 23 Si 0.911 3.089 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.286 1.286 27 C 0.153 3.847 28 C 0.120 3.880 29 H 0.049 0.951 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.406 0.594 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.066 0.934 39 H 0.089 0.911 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.061 0.939 44 H 0.059 0.941 45 H 0.065 0.935 46 H 0.106 0.894 47 H 0.012 0.988 48 H 0.252 0.748 49 H 0.022 0.978 50 H 0.015 0.985 51 H 0.095 0.905 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.497 -9.142 -11.799 17.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.166 4.166 3 C 0.015 3.985 4 H 0.140 0.860 5 N -0.369 5.369 6 C 0.293 3.707 7 C -0.228 4.228 8 O -0.403 6.403 9 C 0.309 3.691 10 O -0.429 6.429 11 N -0.331 5.331 12 C -0.009 4.009 13 C -0.174 4.174 14 C -0.139 4.139 15 C -0.087 4.087 16 C -0.173 4.173 17 C 0.027 3.973 18 N -0.327 5.327 19 C -0.349 4.349 20 H 0.091 0.909 21 C -0.203 4.203 22 N -0.570 5.570 23 Si 0.742 3.258 24 H -0.212 1.212 25 H -0.215 1.215 26 H -0.213 1.213 27 C 0.027 3.973 28 C -0.003 4.003 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.243 0.757 35 H 0.093 0.907 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.084 0.916 39 H 0.107 0.893 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.084 0.916 46 H 0.123 0.877 47 H 0.030 0.970 48 H 0.063 0.937 49 H 0.040 0.960 50 H 0.033 0.967 51 H 0.113 0.887 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.090 -8.876 -11.533 16.650 hybrid contribution -0.102 0.901 -0.211 0.931 sum 7.987 -7.975 -11.744 16.289 Atomic orbital electron populations 1.21801 0.93721 1.00845 1.03726 1.21933 0.98083 0.93892 1.02728 1.20912 0.91457 0.96006 0.90158 0.85990 1.45848 1.17025 1.58180 1.15814 1.20768 0.81364 0.78155 0.90367 1.21822 1.03344 1.02727 0.94875 1.90830 1.50370 1.57956 1.41133 1.20540 0.90187 0.76152 0.82267 1.90629 1.64401 1.48491 1.39331 1.48037 1.07213 1.66032 1.11862 1.21578 0.79691 0.99973 0.99673 1.21997 0.99731 1.00751 0.94891 1.21444 0.93957 1.00944 0.97508 1.21361 0.94871 0.97201 0.95294 1.23012 0.99557 0.99346 0.95427 1.21959 0.90329 0.83571 1.01449 1.44518 1.22727 1.05557 1.59919 1.18969 1.02900 0.85645 1.27435 0.90865 1.24725 0.97786 0.97348 1.00449 1.69768 1.21925 1.25787 1.39516 0.86198 0.79053 0.82922 0.77636 1.21206 1.21539 1.21283 1.21183 0.89747 0.91538 0.94848 1.21870 0.95629 0.98306 0.84461 0.93240 0.91234 0.92476 0.91629 0.90412 0.75725 0.90730 0.88877 0.88661 0.91588 0.89282 0.90979 0.91156 0.91352 0.92059 0.92187 0.91648 0.87653 0.97034 0.93744 0.95976 0.96700 0.88658 0.91259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 8.53 37.16 0.32 -1.69 16 2 C -0.13 -1.64 5.23 -26.73 -0.14 -1.78 16 3 C 0.12 1.85 1.81 -69.08 -0.12 1.73 16 4 H 0.12 2.29 6.49 -51.92 -0.34 1.95 16 5 N -0.71 -9.73 4.96 -54.93 -0.27 -10.01 16 6 C 0.51 7.33 6.53 -10.99 -0.07 7.26 16 7 C -0.17 -1.62 10.39 36.01 0.37 -1.25 16 8 O -0.53 -10.10 14.24 5.55 0.08 -10.02 16 9 C 0.52 7.98 7.05 -10.99 -0.08 7.90 16 10 O -0.55 -9.26 15.24 5.55 0.08 -9.17 16 11 N -0.60 -8.37 2.60 -173.13 -0.45 -8.82 16 12 C 0.11 1.36 6.41 -3.71 -0.02 1.34 16 13 C -0.14 -1.61 5.94 -26.42 -0.16 -1.77 16 14 C -0.10 -1.30 4.52 -26.91 -0.12 -1.42 16 15 C -0.09 -1.37 0.54 -154.09 -0.08 -1.46 16 16 C -0.13 -2.34 5.99 -24.88 -0.15 -2.49 16 17 C 0.15 3.54 5.59 -2.43 -0.01 3.53 16 18 N -0.60 -15.18 3.40 -170.23 -0.58 -15.76 16 19 C -0.22 -6.26 10.28 -15.06 -0.15 -6.42 16 20 H 0.07 2.05 7.83 -52.49 -0.41 1.64 16 21 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 22 N -0.92 -26.96 10.09 55.49 0.56 -26.40 16 23 Si 0.91 22.77 29.55 -169.99 -5.02 17.74 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 C 0.15 3.16 5.43 -3.33 -0.02 3.14 16 28 C 0.12 1.72 3.42 -4.04 -0.01 1.71 16 29 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 30 H 0.07 1.16 7.88 -51.93 -0.41 0.75 16 31 H 0.06 0.83 5.63 -51.93 -0.29 0.53 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.94 6.13 -51.93 -0.32 0.62 16 34 H 0.41 4.84 7.56 -40.82 -0.31 4.54 16 35 H 0.07 0.53 7.91 -51.93 -0.41 0.12 16 36 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.09 1.13 7.00 -51.93 -0.36 0.77 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.98 7.29 -51.93 -0.38 0.60 16 42 H 0.07 0.92 8.11 -51.93 -0.42 0.50 16 43 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 44 H 0.06 0.90 7.98 -51.93 -0.41 0.48 16 45 H 0.06 1.14 8.02 -51.93 -0.42 0.73 16 46 H 0.11 2.82 5.88 -51.93 -0.31 2.51 16 47 H 0.01 0.29 7.92 -51.93 -0.41 -0.12 16 48 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 49 H 0.02 0.47 7.62 -51.92 -0.40 0.08 16 50 H 0.02 0.33 7.55 -51.93 -0.39 -0.06 16 51 H 0.10 1.57 4.67 -51.93 -0.24 1.32 16 52 H 0.07 0.84 8.11 -51.93 -0.42 0.42 16 LS Contribution 389.43 15.07 5.87 5.87 Total: -1.00 -33.35 389.43 -9.03 -42.38 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -8.74 Total: 6.18 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: -0.55 Total: 8.00 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: -0.74 Total: -60.97 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: 0.16 Total: -19.19 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.35 -9.03 -42.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755078720.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.457 kcal (2) G-P(sol) polarization free energy of solvation -33.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds