Wall clock time and date at job start Tue Mar 31 2020 20:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46909 * 2 1 4 4 H 1.09008 * 109.47009 * 54.41081 * 3 2 1 5 5 N 1.46499 * 109.47250 * 294.41677 * 3 2 1 6 6 C 1.34774 * 120.00550 * 84.99589 * 5 3 2 7 7 C 1.50700 * 120.00236 * 179.97438 * 6 5 3 8 8 O 1.21288 * 119.99669 * 0.02562 * 6 5 3 9 9 C 1.50691 * 109.47300 * 174.41071 * 3 2 1 10 10 O 1.21287 * 120.00118 * 111.30494 * 9 3 2 11 11 N 1.34784 * 120.00203 * 291.30490 * 9 3 2 12 12 C 1.46932 * 120.69835 * 176.86628 * 11 9 3 13 13 C 1.53190 * 109.02024 * 125.77879 * 12 11 9 14 14 C 1.53403 * 109.15009 * 55.16287 * 13 12 11 15 15 C 1.52239 * 109.70543 * 299.88561 * 14 13 12 16 16 C 1.54482 * 110.29274 * 182.00638 * 15 14 13 17 17 C 1.55032 * 101.52921 * 153.33959 * 16 15 14 18 18 N 1.47486 * 104.90706 * 323.66300 * 17 16 15 19 19 C 1.36940 * 125.66021 * 204.03801 * 18 17 16 20 20 H 1.07996 * 119.99758 * 179.97438 * 19 18 17 21 21 C 1.38808 * 120.00139 * 359.96572 * 19 18 17 22 22 N 1.31623 * 119.99976 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99859 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47069 * 60.00429 * 23 21 19 25 25 H 1.48503 * 109.46698 * 179.97438 * 23 21 19 26 26 H 1.48492 * 109.47162 * 300.00266 * 23 21 19 27 27 C 1.47181 * 108.67501 * 24.00834 * 18 17 16 28 28 C 1.47072 * 120.69722 * 356.84736 * 11 9 3 29 29 H 1.09010 * 109.46826 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47106 * 299.99157 * 1 2 3 31 31 H 1.08993 * 109.47374 * 59.99849 * 1 2 3 32 32 H 1.09001 * 109.47106 * 240.00843 * 2 1 3 33 33 H 1.09000 * 109.47724 * 119.99928 * 2 1 3 34 34 H 0.97006 * 119.99371 * 264.99789 * 5 3 2 35 35 H 1.09004 * 109.46903 * 0.02562 * 7 6 5 36 36 H 1.08999 * 109.46619 * 119.99876 * 7 6 5 37 37 H 1.08998 * 109.46908 * 239.99962 * 7 6 5 38 38 H 1.09000 * 109.55790 * 245.66947 * 12 11 9 39 39 H 1.08999 * 109.55891 * 5.89172 * 12 11 9 40 40 H 1.08992 * 109.50307 * 175.20268 * 13 12 11 41 41 H 1.09003 * 109.50047 * 295.32399 * 13 12 11 42 42 H 1.09003 * 109.41256 * 179.81773 * 14 13 12 43 43 H 1.09008 * 109.39057 * 59.94060 * 14 13 12 44 44 H 1.08995 * 111.01767 * 271.40039 * 16 15 14 45 45 H 1.09001 * 111.01485 * 35.28043 * 16 15 14 46 46 H 1.08992 * 110.35730 * 204.80089 * 17 16 15 47 47 H 1.09005 * 110.43863 * 82.55861 * 17 16 15 48 48 H 0.97001 * 119.99705 * 179.97438 * 22 21 19 49 49 H 1.09007 * 109.91480 * 239.09964 * 27 18 17 50 50 H 1.09005 * 109.91095 * 117.83353 * 27 18 17 51 51 H 1.09004 * 109.58280 * 352.27069 * 28 11 9 52 52 H 1.09003 * 109.58104 * 112.53384 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5971 1.9845 0.8358 5 7 1.6644 2.0933 -1.2577 6 6 0.4483 2.6597 -1.3866 7 6 0.0623 3.3296 -2.6801 8 8 -0.3351 2.6311 -0.4611 9 6 3.5405 1.4449 0.1384 10 8 4.2348 1.7955 -0.7923 11 7 4.1111 1.0574 1.2963 12 6 5.5731 0.9883 1.4259 13 6 6.0071 1.8224 2.6352 14 6 5.2522 1.3361 3.8790 15 6 3.7535 1.4964 3.6651 16 6 2.9819 1.0573 4.9294 17 6 1.6865 1.9008 4.8103 18 7 2.1240 3.1900 4.2432 19 6 1.4687 4.3849 4.3777 20 1 1.8731 5.2768 3.9225 21 6 0.2845 4.4496 5.0990 22 7 -0.2083 3.3626 5.6540 23 14 -0.6098 6.0794 5.2818 24 1 -0.9791 6.5948 3.9390 25 1 -1.8394 5.8812 6.0907 26 1 0.2776 7.0575 5.9606 27 6 3.3823 2.9793 3.5092 28 6 3.2835 0.6952 2.4569 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8900 34 1 2.2912 2.1164 -1.9977 35 1 0.8879 3.2557 -3.3880 36 1 -0.8172 2.8377 -3.0956 37 1 -0.1631 4.3794 -2.4925 38 1 5.8782 -0.0483 1.5690 39 1 6.0385 1.3845 0.5234 40 1 7.0800 1.7083 2.7898 41 1 5.7742 2.8720 2.4558 42 1 5.5604 1.9248 4.7431 43 1 5.4833 0.2854 4.0548 44 1 2.7580 -0.0090 4.9001 45 1 3.5341 1.3145 5.8333 46 1 1.2402 2.0510 5.7933 47 1 0.9757 1.4145 4.1422 48 1 -1.0356 3.4079 6.1584 49 1 4.1682 3.6051 3.9323 50 1 3.2415 3.2179 2.4550 51 1 2.2394 0.9281 2.2479 52 1 3.3863 -0.3707 2.6605 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755078720.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:19 Heat of formation + Delta-G solvation = -70.562776 kcal Electronic energy + Delta-G solvation = -32492.366181 eV Core-core repulsion = 28491.374232 eV Total energy + Delta-G solvation = -4000.991950 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.08583 -40.78859 -39.71761 -37.25952 -36.53351 -34.78196 -34.00866 -33.16296 -31.86268 -30.67322 -29.98877 -28.32167 -27.52135 -26.29976 -25.36350 -23.39534 -22.83152 -21.97051 -21.52917 -20.85016 -19.45910 -18.90809 -18.62463 -17.86690 -17.24649 -16.96958 -16.85787 -16.51762 -16.24093 -15.90958 -15.69597 -15.13865 -15.04363 -14.82969 -14.56508 -14.29260 -14.27688 -14.01091 -13.85153 -13.60084 -13.47746 -13.34728 -13.28115 -13.05757 -12.94807 -12.90169 -12.77024 -12.55233 -12.50581 -12.15166 -12.05786 -11.97762 -11.93445 -11.77874 -11.57976 -11.31377 -11.06063 -10.97289 -10.83827 -10.73964 -10.17825 -9.68721 -8.87919 -7.79273 -5.21960 1.33138 1.39395 1.43519 1.48940 1.60142 1.74518 2.32605 2.46176 3.18686 3.29217 3.63372 3.70561 3.74475 3.81218 3.90064 3.93714 3.97101 4.11329 4.19392 4.27262 4.33465 4.42026 4.43931 4.50463 4.56374 4.62013 4.67067 4.71585 4.77077 4.82332 4.82486 4.89603 4.91581 4.96463 4.97885 5.05077 5.13363 5.15284 5.19862 5.30180 5.37210 5.39558 5.43670 5.45099 5.52610 5.68958 5.84115 6.20214 6.32513 6.50442 6.91618 7.11146 7.23715 7.78732 8.41214 9.21408 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008297 B = 0.005681 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3373.844138 B = 4927.650602 C = 7035.547903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.118 4.118 3 C 0.125 3.875 4 H 0.075 0.925 5 N -0.706 5.706 6 C 0.499 3.501 7 C -0.159 4.159 8 O -0.584 6.584 9 C 0.520 3.480 10 O -0.566 6.566 11 N -0.596 5.596 12 C 0.111 3.889 13 C -0.130 4.130 14 C -0.095 4.095 15 C -0.074 4.074 16 C -0.116 4.116 17 C 0.154 3.846 18 N -0.622 5.622 19 C -0.240 4.240 20 H 0.066 0.934 21 C -0.060 4.060 22 N -0.941 5.941 23 Si 0.970 3.030 24 H -0.288 1.288 25 H -0.287 1.287 26 H -0.274 1.274 27 C 0.155 3.845 28 C 0.123 3.877 29 H 0.072 0.928 30 H 0.029 0.971 31 H 0.048 0.952 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.417 0.583 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.082 0.918 40 H 0.105 0.895 41 H 0.039 0.961 42 H 0.063 0.937 43 H 0.098 0.902 44 H 0.096 0.904 45 H 0.070 0.930 46 H 0.069 0.931 47 H -0.014 1.014 48 H 0.247 0.753 49 H 0.016 0.984 50 H -0.006 1.006 51 H 0.067 0.933 52 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.924 -11.126 -12.820 20.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.157 4.157 3 C 0.016 3.984 4 H 0.093 0.907 5 N -0.362 5.362 6 C 0.288 3.712 7 C -0.218 4.218 8 O -0.464 6.464 9 C 0.307 3.693 10 O -0.447 6.447 11 N -0.327 5.327 12 C -0.010 4.010 13 C -0.168 4.168 14 C -0.132 4.132 15 C -0.075 4.075 16 C -0.155 4.155 17 C 0.029 3.971 18 N -0.347 5.347 19 C -0.370 4.370 20 H 0.084 0.916 21 C -0.253 4.253 22 N -0.591 5.591 23 Si 0.798 3.202 24 H -0.215 1.215 25 H -0.213 1.213 26 H -0.200 1.200 27 C 0.029 3.971 28 C 0.000 4.000 29 H 0.091 0.909 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.255 0.745 35 H 0.124 0.876 36 H 0.128 0.872 37 H 0.115 0.885 38 H 0.120 0.880 39 H 0.100 0.900 40 H 0.124 0.876 41 H 0.058 0.942 42 H 0.082 0.918 43 H 0.116 0.884 44 H 0.115 0.885 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.004 0.996 48 H 0.057 0.943 49 H 0.034 0.966 50 H 0.012 0.988 51 H 0.086 0.914 52 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 10.580 -10.870 -12.569 19.699 hybrid contribution -0.852 1.578 0.085 1.795 sum 9.727 -9.292 -12.484 18.353 Atomic orbital electron populations 1.21693 0.94762 1.01493 1.01381 1.21890 0.96962 0.92560 1.04255 1.20781 0.91489 0.96874 0.89271 0.90662 1.45870 1.17067 1.57618 1.15595 1.21713 0.80781 0.77396 0.91328 1.21858 1.05197 1.02135 0.92644 1.90813 1.51954 1.60145 1.43495 1.20503 0.89948 0.76136 0.82674 1.90614 1.64631 1.49408 1.40015 1.48091 1.08299 1.65241 1.11052 1.21811 0.77891 1.01994 0.99343 1.21974 1.01629 0.98859 0.94344 1.21432 0.90802 1.03236 0.97763 1.21310 0.97406 0.93506 0.95290 1.22855 0.96094 1.00212 0.96353 1.21754 0.93005 0.83844 0.98482 1.44799 1.24009 1.05336 1.60601 1.19248 1.03580 0.86897 1.27226 0.91598 1.25489 0.98633 1.00494 1.00657 1.70022 1.21849 1.27249 1.39963 0.85284 0.78004 0.79602 0.77269 1.21513 1.21285 1.19980 1.21286 0.87640 0.95358 0.92778 1.21838 0.94246 1.00093 0.83793 0.90876 0.95188 0.93277 0.89382 0.89296 0.74468 0.87595 0.87238 0.88538 0.88029 0.89990 0.87633 0.94191 0.91792 0.88371 0.88539 0.91175 0.91298 0.99649 0.94319 0.96618 0.98787 0.91434 0.87218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.90 8.53 71.98 0.61 -3.29 16 2 C -0.12 -2.97 5.23 30.60 0.16 -2.81 16 3 C 0.12 3.86 1.81 44.24 0.08 3.94 16 4 H 0.08 3.09 6.49 -2.38 -0.02 3.08 16 5 N -0.71 -19.55 4.96 -446.09 -2.21 -21.76 16 6 C 0.50 14.89 6.53 87.66 0.57 15.47 16 7 C -0.16 -2.92 10.39 71.24 0.74 -2.18 16 8 O -0.58 -24.01 14.24 -3.05 -0.04 -24.06 16 9 C 0.52 15.61 7.05 87.65 0.62 16.22 16 10 O -0.57 -18.50 15.24 -3.05 -0.05 -18.55 16 11 N -0.60 -15.53 2.60 -820.03 -2.13 -17.66 16 12 C 0.11 2.27 6.41 86.36 0.55 2.82 16 13 C -0.13 -2.67 5.94 30.79 0.18 -2.49 16 14 C -0.09 -2.09 4.52 30.48 0.14 -1.95 16 15 C -0.07 -2.25 0.54 -51.91 -0.03 -2.27 16 16 C -0.12 -3.89 5.99 31.79 0.19 -3.70 16 17 C 0.15 7.48 5.59 86.89 0.49 7.97 16 18 N -0.62 -32.93 3.40 -692.48 -2.36 -35.28 16 19 C -0.24 -14.29 10.28 84.03 0.86 -13.43 16 20 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 21 C -0.06 -3.55 5.49 84.86 0.47 -3.08 16 22 N -0.94 -57.66 10.09 21.65 0.22 -57.44 16 23 Si 0.97 48.43 29.55 68.60 2.03 50.45 16 24 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 25 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 26 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 27 C 0.15 6.59 5.43 86.47 0.47 7.06 16 28 C 0.12 3.31 3.42 86.07 0.29 3.60 16 29 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 30 H 0.03 1.08 7.88 -2.39 -0.02 1.06 16 31 H 0.05 1.47 5.63 -2.39 -0.01 1.45 16 32 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.09 2.02 6.13 -2.39 -0.01 2.01 16 34 H 0.42 9.64 7.56 -92.70 -0.70 8.94 16 35 H 0.11 1.26 7.91 -2.38 -0.02 1.24 16 36 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.08 1.85 7.00 -2.39 -0.02 1.84 16 40 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.04 1.07 7.29 -2.39 -0.02 1.05 16 42 H 0.06 1.52 8.11 -2.39 -0.02 1.50 16 43 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 44 H 0.10 2.56 7.98 -2.39 -0.02 2.54 16 45 H 0.07 2.31 8.02 -2.39 -0.02 2.29 16 46 H 0.07 3.87 5.88 -2.39 -0.01 3.85 16 47 H -0.01 -0.76 7.92 -2.38 -0.02 -0.78 16 48 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 49 H 0.02 0.69 7.62 -2.38 -0.02 0.67 16 50 H -0.01 -0.27 7.55 -2.38 -0.02 -0.29 16 51 H 0.07 2.26 4.67 -2.39 -0.01 2.25 16 52 H 0.11 2.16 8.11 -2.39 -0.02 2.14 16 Total: -1.00 -79.86 389.43 2.08 -77.78 By element: Atomic # 1 Polarization: 24.42 SS G_CDS: 0.22 Total: 24.64 kcal Atomic # 6 Polarization: 15.46 SS G_CDS: 6.40 Total: 21.86 kcal Atomic # 7 Polarization: -125.66 SS G_CDS: -6.48 Total: -132.13 kcal Atomic # 8 Polarization: -42.52 SS G_CDS: -0.09 Total: -42.61 kcal Atomic # 14 Polarization: 48.43 SS G_CDS: 2.03 Total: 50.45 kcal Total: -79.86 2.08 -77.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755078720.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.219 kcal (2) G-P(sol) polarization free energy of solvation -79.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds