Wall clock time and date at job start Tue Mar 31 2020 20:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.46731 * 2 1 4 4 H 1.08995 * 109.47353 * 55.84256 * 3 2 1 5 5 N 1.46500 * 109.47423 * 295.83969 * 3 2 1 6 6 C 1.34778 * 119.99664 * 85.00096 * 5 3 2 7 7 C 1.50703 * 119.99892 * 180.02562 * 6 5 3 8 8 O 1.21280 * 120.00157 * 0.02562 * 6 5 3 9 9 C 1.50697 * 109.46755 * 175.84406 * 3 2 1 10 10 O 1.21285 * 120.00193 * 99.03125 * 9 3 2 11 11 N 1.34784 * 120.00267 * 279.02655 * 9 3 2 12 12 C 1.46935 * 120.69499 * 355.09730 * 11 9 3 13 13 C 1.53188 * 108.91959 * 125.80834 * 12 11 9 14 14 C 1.53168 * 109.27100 * 55.23118 * 13 12 11 15 15 C 1.52241 * 109.62870 * 299.84198 * 14 13 12 16 16 C 1.54501 * 110.24978 * 297.03462 * 15 14 13 17 17 C 1.55028 * 101.52530 * 276.23568 * 16 15 14 18 18 N 1.47483 * 104.90072 * 323.64375 * 17 16 15 19 19 C 1.36941 * 125.66208 * 204.02590 * 18 17 16 20 20 H 1.08001 * 119.99691 * 159.04062 * 19 18 17 21 21 C 1.38811 * 119.99699 * 339.04258 * 19 18 17 22 22 N 1.31616 * 119.99789 * 159.02804 * 21 19 18 23 23 Si 1.86799 * 120.00037 * 339.02546 * 21 19 18 24 24 H 1.48500 * 109.46990 * 85.50469 * 23 21 19 25 25 H 1.48503 * 109.46759 * 205.50340 * 23 21 19 26 26 H 1.48498 * 109.47330 * 325.49840 * 23 21 19 27 27 C 1.47194 * 108.67636 * 24.00738 * 18 17 16 28 28 C 1.47073 * 120.70317 * 175.07233 * 11 9 3 29 29 H 1.09005 * 109.46963 * 299.99699 * 1 2 3 30 30 H 1.09002 * 109.47308 * 60.00114 * 1 2 3 31 31 H 1.09002 * 109.47107 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46675 * 240.00105 * 2 1 3 33 33 H 1.08995 * 109.47098 * 120.00222 * 2 1 3 34 34 H 0.97002 * 120.00313 * 265.00743 * 5 3 2 35 35 H 1.09000 * 109.47405 * 359.97438 * 7 6 5 36 36 H 1.09003 * 109.47213 * 120.00130 * 7 6 5 37 37 H 1.09001 * 109.46635 * 240.00120 * 7 6 5 38 38 H 1.09001 * 109.56719 * 5.97502 * 12 11 9 39 39 H 1.09000 * 109.56370 * 245.64066 * 12 11 9 40 40 H 1.08998 * 109.50449 * 295.29836 * 13 12 11 41 41 H 1.08991 * 109.54173 * 175.19388 * 13 12 11 42 42 H 1.08997 * 109.43657 * 59.88262 * 14 13 12 43 43 H 1.08996 * 109.44238 * 179.79935 * 14 13 12 44 44 H 1.08999 * 111.01254 * 34.29493 * 16 15 14 45 45 H 1.09001 * 111.01647 * 158.17341 * 16 15 14 46 46 H 1.08993 * 110.35314 * 204.78622 * 17 16 15 47 47 H 1.09000 * 110.44447 * 82.54542 * 17 16 15 48 48 H 0.96996 * 120.00302 * 180.02562 * 22 21 19 49 49 H 1.09006 * 109.90674 * 239.12680 * 27 18 17 50 50 H 1.08999 * 109.91006 * 117.85990 * 27 18 17 51 51 H 1.09001 * 109.57666 * 352.27622 * 28 11 9 52 52 H 1.09000 * 109.57643 * 112.65980 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6171 1.9774 0.8503 5 7 1.6351 2.1036 -1.2431 6 6 0.4163 2.6710 -1.3386 7 6 -0.0004 3.3506 -2.6175 8 8 -0.3451 2.6346 -0.3952 9 6 3.5434 1.4437 0.1030 10 8 4.2195 1.5840 -0.8942 11 7 4.1369 1.2891 1.3032 12 6 3.3359 1.2254 2.5334 13 6 3.6951 -0.0547 3.2942 14 6 5.2064 -0.0891 3.5407 15 6 5.9424 -0.0706 2.2081 16 6 5.6001 -1.3360 1.3905 17 6 6.5972 -2.3657 1.9813 18 7 7.8234 -1.5928 2.2538 19 6 9.0898 -2.1074 2.3353 20 1 9.9448 -1.4614 2.2005 21 6 9.2746 -3.4592 2.5910 22 7 10.4116 -4.0400 2.2714 23 14 7.9094 -4.4540 3.3887 24 1 6.9724 -4.9364 2.3425 25 1 8.4963 -5.6167 4.1020 26 1 7.1745 -3.5996 4.3557 27 6 7.4600 -0.1766 2.4232 28 6 5.5997 1.1799 1.4091 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.2442 2.1329 -1.9975 35 1 0.8083 3.2828 -3.3451 36 1 -0.8897 2.8619 -3.0156 37 1 -0.2210 4.3989 -2.4166 38 1 2.2761 1.2134 2.2787 39 1 3.5535 2.0933 3.1559 40 1 3.4028 -0.9231 2.7039 41 1 3.1702 -0.0706 4.2493 42 1 5.4980 0.7813 4.1283 43 1 5.4646 -0.9973 4.0852 44 1 4.5696 -1.6462 1.5635 45 1 5.7857 -1.1772 0.3283 46 1 6.7997 -3.1554 1.2580 47 1 6.2035 -2.7902 2.9048 48 1 10.5406 -4.9846 2.4497 49 1 7.9830 0.4316 1.6851 50 1 7.7164 0.1546 3.4296 51 1 6.0336 1.1067 0.4118 52 1 5.9956 2.0588 1.9180 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755078721.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:23 Heat of formation + Delta-G solvation = -46.502591 kcal Electronic energy + Delta-G solvation = -31545.811776 eV Core-core repulsion = 27545.863154 eV Total energy + Delta-G solvation = -3999.948622 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.12213 -39.94896 -38.66042 -36.23160 -35.63955 -33.30111 -32.75352 -32.06681 -30.85260 -30.05556 -29.02906 -27.68718 -26.05765 -25.22691 -23.38369 -22.54595 -22.26222 -20.94712 -20.63264 -19.64326 -18.41401 -17.83372 -17.14735 -16.74240 -16.36323 -16.10057 -15.61862 -15.32772 -15.29314 -14.87230 -14.43492 -14.13716 -13.97304 -13.86155 -13.72715 -13.44366 -13.17742 -13.02126 -12.93911 -12.73902 -12.72575 -12.36378 -12.16499 -12.06362 -11.83529 -11.76169 -11.62268 -11.28523 -11.18240 -11.12929 -10.98458 -10.74479 -10.41301 -10.30950 -10.19763 -10.02115 -9.91422 -9.86601 -9.45491 -9.37547 -8.73155 -8.67236 -7.00589 -5.94125 -3.25960 2.24739 2.36330 2.52978 3.10359 3.34226 3.46137 3.48732 4.07987 4.45229 4.54559 4.56360 4.60628 4.69947 4.78776 4.82888 4.83892 4.85743 4.99633 5.04201 5.05020 5.16600 5.22056 5.25730 5.39932 5.43653 5.44734 5.51852 5.58789 5.68098 5.70181 5.70695 5.75595 5.80933 5.87719 5.94939 6.00239 6.07575 6.12990 6.18096 6.27000 6.33611 6.42943 6.55047 6.65787 6.75133 6.78375 7.17926 7.18690 7.74403 7.86295 7.91541 8.32529 8.84494 9.69479 10.19775 11.22347 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021696 B = 0.002899 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.226270 B = 9657.504873 C = 9806.897077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.129 4.129 3 C 0.126 3.874 4 H 0.110 0.890 5 N -0.713 5.713 6 C 0.513 3.487 7 C -0.171 4.171 8 O -0.544 6.544 9 C 0.514 3.486 10 O -0.537 6.537 11 N -0.600 5.600 12 C 0.101 3.899 13 C -0.137 4.137 14 C -0.103 4.103 15 C -0.085 4.085 16 C -0.118 4.118 17 C 0.113 3.887 18 N -0.607 5.607 19 C -0.240 4.240 20 H 0.091 0.909 21 C 0.022 3.978 22 N -0.910 5.910 23 Si 0.886 3.114 24 H -0.287 1.287 25 H -0.303 1.303 26 H -0.276 1.276 27 C 0.149 3.851 28 C 0.130 3.870 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.411 0.589 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.073 0.927 44 H 0.064 0.936 45 H 0.068 0.932 46 H 0.055 0.945 47 H 0.024 0.976 48 H 0.263 0.737 49 H 0.035 0.965 50 H 0.034 0.966 51 H 0.096 0.904 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.204 13.774 -4.259 26.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.168 4.168 3 C 0.017 3.983 4 H 0.128 0.872 5 N -0.368 5.368 6 C 0.301 3.699 7 C -0.230 4.230 8 O -0.422 6.422 9 C 0.300 3.700 10 O -0.414 6.414 11 N -0.332 5.332 12 C -0.021 4.021 13 C -0.175 4.175 14 C -0.141 4.141 15 C -0.086 4.086 16 C -0.156 4.156 17 C -0.012 4.012 18 N -0.334 5.334 19 C -0.367 4.367 20 H 0.108 0.892 21 C -0.177 4.177 22 N -0.554 5.554 23 Si 0.716 3.284 24 H -0.214 1.214 25 H -0.231 1.231 26 H -0.202 1.202 27 C 0.023 3.977 28 C 0.008 3.992 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.248 0.752 35 H 0.096 0.904 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.083 0.917 43 H 0.092 0.908 44 H 0.083 0.917 45 H 0.087 0.913 46 H 0.073 0.927 47 H 0.042 0.958 48 H 0.073 0.927 49 H 0.053 0.947 50 H 0.052 0.948 51 H 0.114 0.886 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -22.169 13.665 -4.111 26.364 hybrid contribution -0.274 -0.785 0.275 0.876 sum -22.443 12.880 -3.836 26.159 Atomic orbital electron populations 1.21787 0.93871 1.01108 1.03061 1.21893 0.97620 0.93721 1.03570 1.20918 0.91574 0.95928 0.89830 0.87216 1.45966 1.17391 1.57185 1.16240 1.20779 0.80972 0.77860 0.90335 1.21845 1.03626 1.02485 0.95075 1.90731 1.52053 1.59376 1.40014 1.20483 0.89805 0.76424 0.83240 1.90699 1.65462 1.49641 1.35623 1.48067 1.07920 1.71295 1.05937 1.21896 0.95411 0.99015 0.85808 1.22022 0.97494 0.97549 1.00470 1.21392 0.93391 1.02929 0.96387 1.21364 0.97090 0.94876 0.95316 1.22763 0.98549 0.95070 0.99228 1.21967 0.87393 0.94708 0.97172 1.44778 1.03171 1.02218 1.83238 1.18637 0.81634 0.93474 1.42981 0.89168 1.25049 0.96137 0.96510 0.99974 1.69825 1.25449 1.11180 1.48952 0.86917 0.81892 0.79239 0.80326 1.21357 1.23149 1.20203 1.21223 0.90043 0.87920 0.98528 1.21568 0.78311 0.97175 1.02116 0.91922 0.92494 0.92954 0.90927 0.90306 0.75191 0.90405 0.88638 0.88636 0.89728 0.90833 0.90979 0.90540 0.91656 0.90843 0.91741 0.91334 0.92688 0.95817 0.92733 0.94734 0.94811 0.88569 0.91293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 8.50 37.16 0.32 -0.98 16 2 C -0.13 -1.19 5.38 -26.73 -0.14 -1.34 16 3 C 0.13 1.24 1.81 -69.09 -0.12 1.11 16 4 H 0.11 1.06 5.93 -51.93 -0.31 0.76 16 5 N -0.71 -6.44 4.99 -54.94 -0.27 -6.71 16 6 C 0.51 4.61 6.47 -10.98 -0.07 4.54 16 7 C -0.17 -0.90 10.39 36.01 0.37 -0.52 16 8 O -0.54 -6.59 14.24 5.56 0.08 -6.51 16 9 C 0.51 6.17 6.93 -10.98 -0.08 6.10 16 10 O -0.54 -8.07 15.39 5.55 0.09 -7.98 16 11 N -0.60 -6.74 2.82 -173.18 -0.49 -7.23 16 12 C 0.10 0.88 5.90 -3.71 -0.02 0.86 16 13 C -0.14 -1.32 5.90 -26.55 -0.16 -1.48 16 14 C -0.10 -1.32 4.55 -27.03 -0.12 -1.44 16 15 C -0.09 -1.27 0.55 -154.13 -0.09 -1.35 16 16 C -0.12 -1.96 5.73 -24.87 -0.14 -2.11 16 17 C 0.11 2.42 4.40 -2.43 -0.01 2.41 16 18 N -0.61 -14.51 3.18 -170.23 -0.54 -15.05 16 19 C -0.24 -6.82 10.57 -15.06 -0.16 -6.98 16 20 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 21 C 0.02 0.64 5.44 -17.43 -0.09 0.54 16 22 N -0.91 -28.27 13.97 55.49 0.78 -27.49 16 23 Si 0.89 22.68 24.29 -169.99 -4.13 18.55 16 24 H -0.29 -7.11 6.62 56.52 0.37 -6.74 16 25 H -0.30 -7.89 7.11 56.52 0.40 -7.49 16 26 H -0.28 -6.88 6.60 56.52 0.37 -6.51 16 27 C 0.15 2.83 6.43 -3.33 -0.02 2.81 16 28 C 0.13 1.71 4.96 -4.08 -0.02 1.69 16 29 H 0.06 0.61 7.80 -51.93 -0.40 0.21 16 30 H 0.06 0.57 5.67 -51.93 -0.29 0.28 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.69 7.46 -51.93 -0.39 0.30 16 34 H 0.41 3.49 7.58 -40.82 -0.31 3.18 16 35 H 0.08 0.28 7.91 -51.93 -0.41 -0.13 16 36 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.08 0.62 5.10 -51.93 -0.26 0.35 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.74 6.21 -51.93 -0.32 0.42 16 41 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.07 1.11 7.49 -51.93 -0.39 0.72 16 44 H 0.06 0.94 6.00 -51.93 -0.31 0.63 16 45 H 0.07 1.20 7.90 -51.93 -0.41 0.79 16 46 H 0.05 1.29 6.86 -51.93 -0.36 0.94 16 47 H 0.02 0.53 5.05 -51.93 -0.26 0.27 16 48 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 49 H 0.03 0.66 7.80 -51.93 -0.40 0.26 16 50 H 0.03 0.64 7.83 -51.93 -0.41 0.23 16 51 H 0.10 1.47 6.90 -51.93 -0.36 1.11 16 52 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 384.09 15.07 5.79 5.79 Total: -1.00 -34.24 384.09 -7.86 -42.11 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -8.60 Total: 0.67 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: -0.56 Total: 3.87 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: -0.53 Total: -56.49 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: 0.16 Total: -14.49 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -4.13 Total: 18.55 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.24 -7.86 -42.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755078721.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.398 kcal (2) G-P(sol) polarization free energy of solvation -34.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds