Wall clock time and date at job start Tue Mar 31 2020 20:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.46731 * 2 1 4 4 H 1.08995 * 109.47353 * 55.84256 * 3 2 1 5 5 N 1.46500 * 109.47423 * 295.83969 * 3 2 1 6 6 C 1.34778 * 119.99664 * 85.00096 * 5 3 2 7 7 C 1.50703 * 119.99892 * 180.02562 * 6 5 3 8 8 O 1.21280 * 120.00157 * 0.02562 * 6 5 3 9 9 C 1.50697 * 109.46755 * 175.84406 * 3 2 1 10 10 O 1.21285 * 120.00193 * 99.03125 * 9 3 2 11 11 N 1.34784 * 120.00267 * 279.02655 * 9 3 2 12 12 C 1.46935 * 120.69499 * 355.09730 * 11 9 3 13 13 C 1.53188 * 108.91959 * 125.80834 * 12 11 9 14 14 C 1.53168 * 109.27100 * 55.23118 * 13 12 11 15 15 C 1.52241 * 109.62870 * 299.84198 * 14 13 12 16 16 C 1.54501 * 110.24978 * 297.03462 * 15 14 13 17 17 C 1.55028 * 101.52530 * 276.23568 * 16 15 14 18 18 N 1.47483 * 104.90072 * 323.64375 * 17 16 15 19 19 C 1.36941 * 125.66208 * 204.02590 * 18 17 16 20 20 H 1.08001 * 119.99691 * 159.04062 * 19 18 17 21 21 C 1.38811 * 119.99699 * 339.04258 * 19 18 17 22 22 N 1.31616 * 119.99789 * 159.02804 * 21 19 18 23 23 Si 1.86799 * 120.00037 * 339.02546 * 21 19 18 24 24 H 1.48500 * 109.46990 * 85.50469 * 23 21 19 25 25 H 1.48503 * 109.46759 * 205.50340 * 23 21 19 26 26 H 1.48498 * 109.47330 * 325.49840 * 23 21 19 27 27 C 1.47194 * 108.67636 * 24.00738 * 18 17 16 28 28 C 1.47073 * 120.70317 * 175.07233 * 11 9 3 29 29 H 1.09005 * 109.46963 * 299.99699 * 1 2 3 30 30 H 1.09002 * 109.47308 * 60.00114 * 1 2 3 31 31 H 1.09002 * 109.47107 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46675 * 240.00105 * 2 1 3 33 33 H 1.08995 * 109.47098 * 120.00222 * 2 1 3 34 34 H 0.97002 * 120.00313 * 265.00743 * 5 3 2 35 35 H 1.09000 * 109.47405 * 359.97438 * 7 6 5 36 36 H 1.09003 * 109.47213 * 120.00130 * 7 6 5 37 37 H 1.09001 * 109.46635 * 240.00120 * 7 6 5 38 38 H 1.09001 * 109.56719 * 5.97502 * 12 11 9 39 39 H 1.09000 * 109.56370 * 245.64066 * 12 11 9 40 40 H 1.08998 * 109.50449 * 295.29836 * 13 12 11 41 41 H 1.08991 * 109.54173 * 175.19388 * 13 12 11 42 42 H 1.08997 * 109.43657 * 59.88262 * 14 13 12 43 43 H 1.08996 * 109.44238 * 179.79935 * 14 13 12 44 44 H 1.08999 * 111.01254 * 34.29493 * 16 15 14 45 45 H 1.09001 * 111.01647 * 158.17341 * 16 15 14 46 46 H 1.08993 * 110.35314 * 204.78622 * 17 16 15 47 47 H 1.09000 * 110.44447 * 82.54542 * 17 16 15 48 48 H 0.96996 * 120.00302 * 180.02562 * 22 21 19 49 49 H 1.09006 * 109.90674 * 239.12680 * 27 18 17 50 50 H 1.08999 * 109.91006 * 117.85990 * 27 18 17 51 51 H 1.09001 * 109.57666 * 352.27622 * 28 11 9 52 52 H 1.09000 * 109.57643 * 112.65980 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6171 1.9774 0.8503 5 7 1.6351 2.1036 -1.2431 6 6 0.4163 2.6710 -1.3386 7 6 -0.0004 3.3506 -2.6175 8 8 -0.3451 2.6346 -0.3952 9 6 3.5434 1.4437 0.1030 10 8 4.2195 1.5840 -0.8942 11 7 4.1369 1.2891 1.3032 12 6 3.3359 1.2254 2.5334 13 6 3.6951 -0.0547 3.2942 14 6 5.2064 -0.0891 3.5407 15 6 5.9424 -0.0706 2.2081 16 6 5.6001 -1.3360 1.3905 17 6 6.5972 -2.3657 1.9813 18 7 7.8234 -1.5928 2.2538 19 6 9.0898 -2.1074 2.3353 20 1 9.9448 -1.4614 2.2005 21 6 9.2746 -3.4592 2.5910 22 7 10.4116 -4.0400 2.2714 23 14 7.9094 -4.4540 3.3887 24 1 6.9724 -4.9364 2.3425 25 1 8.4963 -5.6167 4.1020 26 1 7.1745 -3.5996 4.3557 27 6 7.4600 -0.1766 2.4232 28 6 5.5997 1.1799 1.4091 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.2442 2.1329 -1.9975 35 1 0.8083 3.2828 -3.3451 36 1 -0.8897 2.8619 -3.0156 37 1 -0.2210 4.3989 -2.4166 38 1 2.2761 1.2134 2.2787 39 1 3.5535 2.0933 3.1559 40 1 3.4028 -0.9231 2.7039 41 1 3.1702 -0.0706 4.2493 42 1 5.4980 0.7813 4.1283 43 1 5.4646 -0.9973 4.0852 44 1 4.5696 -1.6462 1.5635 45 1 5.7857 -1.1772 0.3283 46 1 6.7997 -3.1554 1.2580 47 1 6.2035 -2.7902 2.9048 48 1 10.5406 -4.9846 2.4497 49 1 7.9830 0.4316 1.6851 50 1 7.7164 0.1546 3.4296 51 1 6.0336 1.1067 0.4118 52 1 5.9956 2.0588 1.9180 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755078721.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:22 Heat of formation + Delta-G solvation = -70.922546 kcal Electronic energy + Delta-G solvation = -31546.870705 eV Core-core repulsion = 27545.863154 eV Total energy + Delta-G solvation = -4001.007550 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.05281 -40.88301 -39.76556 -37.49845 -36.44680 -34.85287 -33.67406 -33.26403 -32.33840 -30.68949 -30.55631 -28.63989 -27.43278 -26.23927 -24.99389 -23.61945 -23.00975 -22.36588 -21.54701 -20.68882 -19.65366 -18.68872 -18.60829 -17.87033 -17.28222 -17.12820 -16.94889 -16.73543 -16.20067 -15.93771 -15.60682 -15.29576 -15.12287 -14.91597 -14.70823 -14.55889 -14.44780 -14.16450 -14.07114 -13.70168 -13.54806 -13.38009 -13.32438 -13.11577 -13.00015 -12.90356 -12.83520 -12.58509 -12.48331 -12.33166 -12.08951 -11.90631 -11.86462 -11.74325 -11.51362 -11.37163 -11.26615 -10.91814 -10.85770 -10.81405 -10.13032 -9.67559 -9.03892 -8.20424 -5.48593 1.28042 1.35277 1.39419 1.45167 1.61026 1.73256 2.37865 2.39349 3.01856 3.25162 3.30456 3.53298 3.73278 3.75599 3.84026 3.89141 4.00673 4.07026 4.14123 4.17948 4.31687 4.34393 4.39840 4.45336 4.51686 4.56082 4.65124 4.67804 4.71687 4.76550 4.78364 4.82362 4.87680 4.90219 4.92430 5.00182 5.07455 5.11290 5.14012 5.14915 5.18299 5.33183 5.40817 5.44253 5.45903 5.49302 5.67365 6.08437 6.30081 6.51777 6.74591 6.97704 7.21783 7.51540 8.09761 8.99915 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021696 B = 0.002899 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.226270 B = 9657.504873 C = 9806.897077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.125 4.125 3 C 0.132 3.868 4 H 0.117 0.883 5 N -0.713 5.713 6 C 0.510 3.490 7 C -0.166 4.166 8 O -0.577 6.577 9 C 0.513 3.487 10 O -0.572 6.572 11 N -0.597 5.597 12 C 0.099 3.901 13 C -0.130 4.130 14 C -0.102 4.102 15 C -0.070 4.070 16 C -0.104 4.104 17 C 0.108 3.892 18 N -0.626 5.626 19 C -0.234 4.234 20 H 0.056 0.944 21 C -0.039 4.039 22 N -0.959 5.959 23 Si 0.950 3.050 24 H -0.274 1.274 25 H -0.308 1.308 26 H -0.262 1.262 27 C 0.142 3.858 28 C 0.138 3.862 29 H 0.058 0.942 30 H 0.046 0.954 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.413 0.587 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.093 0.907 40 H 0.068 0.932 41 H 0.104 0.896 42 H 0.082 0.918 43 H 0.051 0.949 44 H 0.094 0.906 45 H 0.055 0.945 46 H 0.029 0.971 47 H 0.028 0.972 48 H 0.262 0.738 49 H 0.028 0.972 50 H 0.038 0.962 51 H 0.071 0.929 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.897 14.954 -3.400 30.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.164 4.164 3 C 0.023 3.977 4 H 0.134 0.866 5 N -0.367 5.367 6 C 0.300 3.700 7 C -0.225 4.225 8 O -0.457 6.457 9 C 0.301 3.699 10 O -0.452 6.452 11 N -0.328 5.328 12 C -0.022 4.022 13 C -0.168 4.168 14 C -0.140 4.140 15 C -0.071 4.071 16 C -0.142 4.142 17 C -0.017 4.017 18 N -0.353 5.353 19 C -0.363 4.363 20 H 0.074 0.926 21 C -0.233 4.233 22 N -0.606 5.606 23 Si 0.779 3.221 24 H -0.200 1.200 25 H -0.237 1.237 26 H -0.186 1.186 27 C 0.017 3.983 28 C 0.015 3.985 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.107 0.893 34 H 0.251 0.749 35 H 0.113 0.887 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.111 0.889 40 H 0.087 0.913 41 H 0.123 0.877 42 H 0.100 0.900 43 H 0.070 0.930 44 H 0.113 0.887 45 H 0.074 0.926 46 H 0.047 0.953 47 H 0.046 0.954 48 H 0.071 0.929 49 H 0.046 0.954 50 H 0.056 0.944 51 H 0.090 0.910 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -25.908 14.880 -3.245 30.053 hybrid contribution 0.956 -1.060 -0.052 1.429 sum -24.952 13.820 -3.296 28.713 Atomic orbital electron populations 1.21705 0.93653 1.01402 1.02341 1.21871 0.97603 0.93238 1.03669 1.20883 0.89716 0.96509 0.90548 0.86579 1.46044 1.17599 1.57022 1.16077 1.21405 0.80344 0.77237 0.91061 1.21885 1.04589 1.02536 0.93524 1.90712 1.52837 1.60693 1.41445 1.20875 0.90594 0.75628 0.82849 1.90689 1.66368 1.51237 1.36894 1.48108 1.07145 1.70732 1.06847 1.22141 0.96034 0.99400 0.84648 1.22000 0.95011 0.97761 1.02017 1.21391 0.95488 1.02660 0.94449 1.21254 0.94131 0.94854 0.96888 1.22675 0.98719 0.94404 0.98417 1.22047 0.87525 0.95272 0.96853 1.44884 1.02475 1.04534 1.83389 1.18574 0.82985 0.93213 1.41548 0.92638 1.25719 0.98732 0.97813 1.01026 1.69961 1.28036 1.11545 1.51028 0.85870 0.79178 0.77497 0.79565 1.20046 1.23674 1.18649 1.21420 0.93334 0.85032 0.98473 1.21305 0.79853 0.96770 1.00529 0.92303 0.93535 0.92109 0.91759 0.89287 0.74897 0.88696 0.87665 0.87760 0.87764 0.88881 0.91340 0.87738 0.89979 0.93009 0.88740 0.92574 0.95271 0.95413 0.92872 0.95391 0.94362 0.91031 0.89598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 8.50 71.98 0.61 -1.54 16 2 C -0.12 -1.99 5.38 30.60 0.16 -1.83 16 3 C 0.13 2.27 1.81 44.24 0.08 2.35 16 4 H 0.12 1.89 5.93 -2.39 -0.01 1.87 16 5 N -0.71 -11.59 4.99 -446.11 -2.22 -13.81 16 6 C 0.51 8.22 6.47 87.66 0.57 8.78 16 7 C -0.17 -1.37 10.39 71.24 0.74 -0.63 16 8 O -0.58 -12.95 14.24 -3.03 -0.04 -12.99 16 9 C 0.51 11.25 6.93 87.66 0.61 11.85 16 10 O -0.57 -16.65 15.39 -3.05 -0.05 -16.70 16 11 N -0.60 -11.66 2.82 -820.20 -2.32 -13.98 16 12 C 0.10 1.27 5.90 86.36 0.51 1.78 16 13 C -0.13 -1.89 5.90 30.71 0.18 -1.71 16 14 C -0.10 -2.25 4.55 30.40 0.14 -2.11 16 15 C -0.07 -1.95 0.55 -51.93 -0.03 -1.98 16 16 C -0.10 -3.30 5.73 31.80 0.18 -3.12 16 17 C 0.11 4.55 4.40 86.89 0.38 4.93 16 18 N -0.63 -30.25 3.18 -692.49 -2.21 -32.46 16 19 C -0.23 -13.79 10.57 84.03 0.89 -12.90 16 20 H 0.06 3.55 8.06 -2.91 -0.02 3.53 16 21 C -0.04 -2.32 5.44 84.86 0.46 -1.86 16 22 N -0.96 -61.80 13.97 21.65 0.30 -61.50 16 23 Si 0.95 47.49 24.29 68.60 1.67 49.16 16 24 H -0.27 -13.04 6.62 99.48 0.66 -12.38 16 25 H -0.31 -15.54 7.11 99.48 0.71 -14.84 16 26 H -0.26 -12.30 6.60 99.48 0.66 -11.65 16 27 C 0.14 5.37 6.43 86.46 0.56 5.93 16 28 C 0.14 3.37 4.96 86.04 0.43 3.79 16 29 H 0.06 1.00 7.80 -2.38 -0.02 0.98 16 30 H 0.05 0.85 5.67 -2.39 -0.01 0.83 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.09 1.24 7.46 -2.39 -0.02 1.22 16 34 H 0.41 6.42 7.58 -92.71 -0.70 5.72 16 35 H 0.09 0.45 7.91 -2.39 -0.02 0.43 16 36 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.10 1.01 5.10 -2.39 -0.01 1.00 16 39 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.07 1.08 6.21 -2.39 -0.01 1.06 16 41 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.05 1.40 7.49 -2.39 -0.02 1.38 16 44 H 0.09 2.45 6.00 -2.39 -0.01 2.44 16 45 H 0.06 1.93 7.90 -2.39 -0.02 1.91 16 46 H 0.03 1.37 6.86 -2.39 -0.02 1.35 16 47 H 0.03 1.18 5.05 -2.39 -0.01 1.17 16 48 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 49 H 0.03 1.08 7.80 -2.38 -0.02 1.07 16 50 H 0.04 1.42 7.83 -2.39 -0.02 1.40 16 51 H 0.07 2.14 6.90 -2.39 -0.02 2.12 16 52 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -77.74 384.09 1.73 -76.01 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: 0.13 Total: 14.50 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: 6.47 Total: 11.76 kcal Atomic # 7 Polarization: -115.30 SS G_CDS: -6.44 Total: -121.75 kcal Atomic # 8 Polarization: -29.60 SS G_CDS: -0.09 Total: -29.69 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 1.67 Total: 49.16 kcal Total: -77.74 1.73 -76.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755078721.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.088 kcal (2) G-P(sol) polarization free energy of solvation -77.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds