Wall clock time and date at job start Tue Mar 31 2020 19:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46746 * 2 1 4 4 C 1.50706 * 109.46775 * 240.00323 * 2 1 3 5 5 O 1.21282 * 119.99871 * 25.00006 * 4 2 1 6 6 N 1.34773 * 119.99585 * 204.99732 * 4 2 1 7 7 C 1.46499 * 119.99760 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.47208 * 180.02562 * 7 6 4 9 9 H 1.09001 * 115.51266 * 330.58559 * 8 7 6 10 10 C 1.52997 * 117.44701 * 185.16861 * 8 7 6 11 11 H 1.09008 * 119.53407 * 4.11659 * 10 8 7 12 12 C 1.54386 * 118.12473 * 160.80711 * 10 8 7 13 13 N 1.48007 * 104.64605 * 87.22091 * 12 10 8 14 14 C 1.36949 * 127.84263 * 140.40602 * 13 12 10 15 15 H 1.07995 * 119.99992 * 195.64213 * 14 13 12 16 16 C 1.38807 * 119.99639 * 15.63897 * 14 13 12 17 17 N 1.31623 * 120.00536 * 9.10369 * 16 14 13 18 18 Si 1.86798 * 119.99960 * 189.09734 * 16 14 13 19 19 H 1.48504 * 109.47083 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47005 * 120.00140 * 18 16 14 21 21 H 1.48502 * 109.47412 * 240.00352 * 18 16 14 22 22 C 1.48143 * 104.32470 * 320.45582 * 13 12 10 23 23 C 1.53003 * 117.44623 * 115.99635 * 8 7 6 24 24 H 1.09003 * 119.53615 * 355.88895 * 23 8 7 25 25 N 1.46893 * 109.47042 * 120.00473 * 2 1 3 26 26 C 1.47015 * 111.00260 * 63.63593 * 25 2 1 27 27 C 1.53103 * 109.25570 * 177.60846 * 26 25 2 28 28 O 1.43011 * 109.25831 * 56.84760 * 27 26 25 29 29 C 1.43016 * 113.74191 * 301.32683 * 28 27 26 30 30 C 1.47020 * 111.00141 * 299.99548 * 25 2 1 31 31 H 1.09002 * 109.47497 * 59.99694 * 1 2 3 32 32 H 1.09004 * 109.47234 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47185 * 299.99619 * 1 2 3 34 34 H 1.08995 * 109.47227 * 60.00669 * 3 2 1 35 35 H 1.09001 * 109.46521 * 180.02562 * 3 2 1 36 36 H 1.09000 * 109.47123 * 299.99655 * 3 2 1 37 37 H 0.97000 * 120.00164 * 0.02562 * 6 4 2 38 38 H 1.09000 * 109.47335 * 300.00176 * 7 6 4 39 39 H 1.09001 * 109.47122 * 60.00538 * 7 6 4 40 40 H 1.08999 * 110.40811 * 205.97554 * 12 10 8 41 41 H 1.08992 * 110.41034 * 328.40625 * 12 10 8 42 42 H 0.96993 * 120.00549 * 179.97438 * 17 16 14 43 43 H 1.09002 * 110.40544 * 280.75719 * 22 13 12 44 44 H 1.08997 * 110.41057 * 158.32189 * 22 13 12 45 45 H 1.08998 * 109.50238 * 297.53627 * 26 25 2 46 46 H 1.08997 * 109.50751 * 57.67227 * 26 25 2 47 47 H 1.09001 * 109.50439 * 296.91141 * 27 26 25 48 48 H 1.09004 * 109.49878 * 176.78146 * 27 26 25 49 49 H 1.09002 * 109.50452 * 298.73878 * 29 28 27 50 50 H 1.08992 * 109.54327 * 178.62901 * 29 28 27 51 51 H 1.08999 * 109.50463 * 302.33550 * 30 25 2 52 52 H 1.09002 * 109.49931 * 62.45950 * 30 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2306 5 8 1.3369 -0.7704 -2.2224 6 7 3.2543 -1.2789 -1.2288 7 6 3.7423 -1.9699 -2.4248 8 6 5.1447 -2.5208 -2.1589 9 1 5.7426 -1.9571 -1.4428 10 6 5.8795 -3.1746 -3.3309 11 1 5.4233 -3.1700 -4.3210 12 6 7.4130 -3.3257 -3.2354 13 7 7.6192 -4.6145 -2.5375 14 6 8.5671 -5.5682 -2.7972 15 1 8.4579 -6.5628 -2.3906 16 6 9.6680 -5.2566 -3.5830 17 7 9.8970 -4.0076 -3.9297 18 14 10.8250 -6.6097 -4.1485 19 1 10.3496 -7.9169 -3.6283 20 1 10.8531 -6.6488 -5.6328 21 1 12.1917 -6.3394 -3.6345 22 6 6.5670 -4.6394 -1.4950 23 6 5.3219 -4.0404 -2.1839 24 1 4.4504 -4.6808 -2.3194 25 7 2.0197 -0.6926 1.1993 26 6 1.6207 -2.1075 1.1905 27 6 2.2007 -2.8034 2.4248 28 8 1.7571 -2.1230 3.6019 29 6 2.1290 -0.7427 3.6438 30 6 1.5484 -0.0260 2.4220 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9563 -0.8900 37 1 3.8103 -1.2311 -0.4354 38 1 3.0697 -2.7921 -2.6693 39 1 3.7789 -1.2698 -3.2595 40 1 7.8545 -3.3587 -4.2314 41 1 7.8402 -2.5071 -2.6563 42 1 10.6665 -3.7898 -4.4785 43 1 6.8615 -4.0267 -0.6430 44 1 6.3701 -5.6635 -1.1780 45 1 0.5332 -2.1791 1.2098 46 1 2.0019 -2.5876 0.2892 47 1 3.2894 -2.7786 2.3786 48 1 1.8602 -3.8385 2.4525 49 1 3.2157 -0.6581 3.6331 50 1 1.7374 -0.2871 4.5533 51 1 1.8767 1.0134 2.4195 52 1 0.4597 -0.0643 2.4608 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755429800.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:24 Heat of formation + Delta-G solvation = -7.979211 kcal Electronic energy + Delta-G solvation = -30582.809407 eV Core-core repulsion = 26584.531284 eV Total energy + Delta-G solvation = -3998.278123 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.05058 -39.32992 -38.73214 -36.73647 -35.03399 -33.32569 -32.32279 -31.57575 -30.82469 -27.89245 -27.54657 -27.13453 -26.81921 -25.19534 -24.21852 -22.76009 -21.12929 -20.97405 -20.17908 -19.33600 -19.11653 -17.83197 -16.83609 -16.65198 -16.23125 -16.00384 -15.51424 -15.38116 -15.04763 -14.93146 -14.74894 -14.46641 -14.36861 -13.94990 -13.70145 -13.39989 -12.94480 -12.88204 -12.71218 -12.59458 -12.49514 -12.33065 -12.22926 -11.84925 -11.81112 -11.65847 -11.40874 -11.27421 -11.10983 -10.85632 -10.81725 -10.65868 -10.31429 -10.11683 -10.08701 -9.87896 -9.75204 -9.39760 -9.13035 -8.92539 -8.83496 -8.64898 -6.87726 -5.81216 -3.15526 2.46097 3.06270 3.24506 3.36822 3.42996 3.45388 3.56089 4.11525 4.29228 4.45423 4.47652 4.55225 4.65963 4.71124 4.76500 4.87851 4.90380 4.95219 5.12409 5.22078 5.26655 5.28639 5.32445 5.36171 5.38579 5.42496 5.43985 5.46719 5.51002 5.54722 5.62314 5.76498 5.79156 5.86672 5.88711 5.91206 5.95814 6.21881 6.33734 6.44374 6.46567 6.55894 6.65743 6.70470 6.81536 6.90886 7.34916 7.50146 7.52400 7.70895 8.15141 8.19965 9.10003 9.72686 10.49610 11.33116 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017519 B = 0.002449 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.867565 B =11429.333406 C =12350.112885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.090 3.910 3 C -0.138 4.138 4 C 0.526 3.474 5 O -0.544 6.544 6 N -0.712 5.712 7 C 0.152 3.848 8 C -0.148 4.148 9 H 0.103 0.897 10 C -0.162 4.162 11 H 0.102 0.898 12 C 0.184 3.816 13 N -0.594 5.594 14 C -0.227 4.227 15 H 0.077 0.923 16 C -0.006 4.006 17 N -0.915 5.915 18 Si 0.912 3.088 19 H -0.279 1.279 20 H -0.289 1.289 21 H -0.290 1.290 22 C 0.154 3.846 23 C -0.171 4.171 24 H 0.102 0.898 25 N -0.523 5.523 26 C 0.005 3.995 27 C 0.066 3.934 28 O -0.386 6.386 29 C 0.064 3.936 30 C 0.013 3.987 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.410 0.590 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.090 0.910 41 H 0.023 0.977 42 H 0.254 0.746 43 H 0.024 0.976 44 H 0.049 0.951 45 H 0.049 0.951 46 H 0.092 0.908 47 H 0.065 0.935 48 H 0.099 0.901 49 H 0.062 0.938 50 H 0.097 0.903 51 H 0.092 0.908 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.675 10.630 13.084 25.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.002 4.002 3 C -0.195 4.195 4 C 0.310 3.690 5 O -0.421 6.421 6 N -0.363 5.363 7 C 0.029 3.971 8 C -0.167 4.167 9 H 0.121 0.879 10 C -0.182 4.182 11 H 0.120 0.880 12 C 0.058 3.942 13 N -0.318 5.318 14 C -0.355 4.355 15 H 0.095 0.905 16 C -0.203 4.203 17 N -0.562 5.562 18 Si 0.742 3.258 19 H -0.204 1.204 20 H -0.216 1.216 21 H -0.217 1.217 22 C 0.028 3.972 23 C -0.191 4.191 24 H 0.120 0.880 25 N -0.250 5.250 26 C -0.123 4.123 27 C -0.011 4.011 28 O -0.304 6.304 29 C -0.014 4.014 30 C -0.115 4.115 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.246 0.754 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.108 0.892 41 H 0.041 0.959 42 H 0.064 0.936 43 H 0.042 0.958 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.111 0.889 47 H 0.083 0.917 48 H 0.117 0.883 49 H 0.080 0.920 50 H 0.115 0.885 51 H 0.110 0.890 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -18.474 10.416 12.367 24.550 hybrid contribution 0.095 -0.502 -0.276 0.581 sum -18.379 9.914 12.091 24.130 Atomic orbital electron populations 1.22257 0.94174 1.03039 1.03126 1.21313 0.94784 0.95602 0.88549 1.21855 1.02478 0.92287 1.02925 1.20195 0.81570 0.78461 0.88756 1.90715 1.56882 1.59566 1.34913 1.46101 1.17551 1.55370 1.17302 1.20893 0.93088 0.96034 0.87092 1.22512 0.95483 0.95367 1.03367 0.87922 1.24215 0.99041 1.02524 0.92451 0.87966 1.21032 0.86204 0.87361 0.99573 1.45181 1.33855 1.19467 1.33271 1.19044 0.98123 0.90236 1.28085 0.90537 1.24897 0.97332 0.96381 1.01689 1.69904 1.29510 1.15841 1.40896 0.86050 0.80529 0.80893 0.78294 1.20365 1.21606 1.21680 1.21133 0.87124 0.97614 0.91316 1.23961 1.00289 0.90837 1.03973 0.88032 1.62465 1.58974 1.02230 1.01299 1.22995 0.99680 0.88846 1.00749 1.22670 0.99405 0.95916 0.83136 1.87993 1.78656 1.22490 1.41278 1.22666 0.99862 0.81747 0.97082 1.22911 0.99042 0.99576 0.89977 0.90577 0.92041 0.91639 0.91209 0.90982 0.91214 0.75389 0.91590 0.91203 0.89224 0.95897 0.93605 0.95832 0.93243 0.93276 0.88943 0.91710 0.88252 0.91999 0.88483 0.89003 0.93202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.48 7.31 37.16 0.27 -1.20 16 2 C 0.09 0.82 0.64 -132.75 -0.08 0.73 16 3 C -0.14 -1.03 8.23 37.16 0.31 -0.73 16 4 C 0.53 6.40 5.41 -10.98 -0.06 6.34 16 5 O -0.54 -8.61 16.10 5.56 0.09 -8.53 16 6 N -0.71 -8.18 4.45 -60.29 -0.27 -8.45 16 7 C 0.15 2.02 5.95 -4.04 -0.02 2.00 16 8 C -0.15 -2.22 5.40 -90.62 -0.49 -2.71 16 9 H 0.10 1.55 8.04 -51.93 -0.42 1.13 16 10 C -0.16 -3.00 6.85 -89.30 -0.61 -3.61 16 11 H 0.10 1.81 8.14 -51.92 -0.42 1.39 16 12 C 0.18 4.36 5.69 -2.49 -0.01 4.35 16 13 N -0.59 -15.06 3.38 -168.98 -0.57 -15.63 16 14 C -0.23 -6.28 10.35 -15.06 -0.16 -6.43 16 15 H 0.08 2.05 7.84 -52.49 -0.41 1.64 16 16 C -0.01 -0.17 5.40 -17.43 -0.09 -0.26 16 17 N -0.92 -26.63 10.87 55.49 0.60 -26.03 16 18 Si 0.91 21.83 29.56 -169.99 -5.03 16.80 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 C 0.15 3.16 7.04 -2.41 -0.02 3.14 16 23 C -0.17 -2.93 6.74 -89.29 -0.60 -3.53 16 24 H 0.10 1.61 8.12 -51.93 -0.42 1.19 16 25 N -0.52 -4.23 3.83 -219.99 -0.84 -5.07 16 26 C 0.01 0.05 4.86 -3.71 -0.02 0.03 16 27 C 0.07 0.56 7.01 37.21 0.26 0.82 16 28 O -0.39 -3.67 10.83 -35.23 -0.38 -4.05 16 29 C 0.06 0.44 7.01 37.20 0.26 0.70 16 30 C 0.01 0.08 4.87 -3.71 -0.02 0.07 16 31 H 0.08 0.74 7.87 -51.93 -0.41 0.33 16 32 H 0.06 0.60 6.54 -51.93 -0.34 0.26 16 33 H 0.06 0.46 6.46 -51.93 -0.34 0.13 16 34 H 0.07 0.40 6.35 -51.93 -0.33 0.07 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.41 4.25 7.72 -40.82 -0.31 3.93 16 38 H 0.07 0.92 7.93 -51.93 -0.41 0.51 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.09 2.39 6.51 -51.93 -0.34 2.05 16 41 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 43 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.05 0.46 6.52 -51.93 -0.34 0.12 16 46 H 0.09 0.92 6.22 -51.93 -0.32 0.59 16 47 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 48 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 51 H 0.09 0.48 6.19 -51.93 -0.32 0.16 16 52 H 0.05 0.35 6.44 -51.93 -0.33 0.01 16 LS Contribution 395.69 15.07 5.96 5.96 Total: -1.00 -31.69 395.69 -10.35 -42.04 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -8.83 Total: 3.26 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -1.09 Total: -0.30 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: -1.08 Total: -55.18 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: -0.29 Total: -12.57 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.69 -10.35 -42.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755429800.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.058 kcal (2) G-P(sol) polarization free energy of solvation -31.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds