Wall clock time and date at job start Tue Mar 31 2020 19:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47419 * 2 1 4 4 H 1.08999 * 115.54746 * 29.32432 * 3 2 1 5 5 C 1.53004 * 117.51448 * 243.62955 * 3 2 1 6 6 C 1.53000 * 117.49856 * 175.00226 * 3 2 1 7 7 H 1.08994 * 117.49755 * 359.97438 * 6 3 2 8 8 C 1.50697 * 117.49636 * 214.99833 * 6 3 2 9 9 O 1.21289 * 120.00123 * 0.02562 * 8 6 3 10 10 N 1.34779 * 120.00001 * 179.97438 * 8 6 3 11 11 C 1.46494 * 119.99968 * 0.02562 * 10 8 6 12 12 C 1.46506 * 119.99815 * 180.02562 * 10 8 6 13 13 H 1.09001 * 109.47020 * 359.97438 * 12 10 8 14 14 C 1.52995 * 109.47029 * 120.00365 * 12 10 8 15 15 N 1.46906 * 109.46978 * 304.99720 * 14 12 10 16 16 C 1.46901 * 110.99793 * 180.02562 * 15 14 12 17 17 C 1.50701 * 109.46921 * 179.97438 * 16 15 14 18 18 O 1.21294 * 119.99849 * 0.02562 * 17 16 15 19 19 N 1.34780 * 119.99795 * 179.97438 * 17 16 15 20 20 C 1.37101 * 119.99707 * 180.02562 * 19 17 16 21 21 H 1.08002 * 119.99704 * 359.97438 * 20 19 17 22 22 C 1.38941 * 119.99927 * 180.02562 * 20 19 17 23 23 N 1.31417 * 120.00180 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00273 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47268 * 89.99721 * 24 22 20 26 26 H 1.48498 * 109.47211 * 209.99980 * 24 22 20 27 27 H 1.48505 * 109.46734 * 329.99774 * 24 22 20 28 28 C 1.53001 * 109.46612 * 240.00178 * 12 10 8 29 29 C 1.53001 * 117.49672 * 248.74486 * 28 12 10 30 30 C 1.53002 * 117.49434 * 180.09005 * 28 12 10 31 31 H 1.08999 * 109.47048 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47109 * 300.00256 * 1 2 3 33 33 H 1.09002 * 109.46844 * 60.00078 * 1 2 3 34 34 H 1.09002 * 109.47109 * 239.99744 * 2 1 3 35 35 H 1.09002 * 109.46844 * 119.99922 * 2 1 3 36 36 H 1.09002 * 117.49337 * 145.02809 * 5 3 2 37 37 H 1.08998 * 117.49981 * 0.02562 * 5 3 2 38 38 H 1.09006 * 109.46829 * 269.99767 * 11 10 8 39 39 H 1.09002 * 109.47180 * 29.99283 * 11 10 8 40 40 H 1.09001 * 109.47569 * 149.99842 * 11 10 8 41 41 H 1.08995 * 109.46859 * 185.00012 * 14 12 10 42 42 H 1.09002 * 109.47639 * 64.99680 * 14 12 10 43 43 H 1.00898 * 110.99995 * 303.95410 * 15 14 12 44 44 H 1.09002 * 109.47401 * 59.99808 * 16 15 14 45 45 H 1.09001 * 109.46874 * 299.99821 * 16 15 14 46 46 H 0.96995 * 120.00011 * 0.02562 * 19 17 16 47 47 H 0.97000 * 119.99884 * 180.02562 * 23 22 20 48 48 H 1.08998 * 115.55555 * 34.41663 * 28 12 10 49 49 H 1.08997 * 117.49847 * 0.02562 * 29 28 12 50 50 H 1.09004 * 117.49993 * 145.02335 * 29 28 12 51 51 H 1.09001 * 117.49567 * 214.97465 * 30 28 12 52 52 H 1.09000 * 117.50338 * 359.97317 * 30 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3884 2.1715 0.4816 5 6 2.8440 1.9079 -1.2158 6 6 3.5502 1.6578 0.1182 7 1 4.1803 0.7718 0.1964 8 6 4.0230 2.8616 0.8917 9 8 3.2159 3.6159 1.3925 10 7 5.3426 3.0995 1.0279 11 6 6.3173 2.1881 0.4235 12 6 5.8021 4.2696 1.7804 13 1 4.9403 4.8243 2.1514 14 6 6.6613 3.8117 2.9606 15 7 5.9033 2.8522 3.7749 16 6 6.6985 2.3902 4.9204 17 6 5.8898 1.4103 5.7308 18 8 4.7620 1.1245 5.3875 19 7 6.4199 0.8506 6.8363 20 6 5.6843 -0.0412 7.5733 21 1 4.6799 -0.2950 7.2681 22 6 6.2306 -0.6178 8.7133 23 7 7.4527 -0.3086 9.0849 24 14 5.2287 -1.8335 9.7170 25 1 5.4660 -3.2088 9.2094 26 1 5.6378 -1.7545 11.1423 27 1 3.7857 -1.5037 9.5972 28 6 6.6324 5.1709 0.8644 29 6 8.1325 5.2755 1.1472 30 6 7.2087 6.4530 1.4686 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 2.7212 2.9432 -1.5338 37 1 3.0092 1.1866 -2.0161 38 1 6.5709 1.4030 1.1359 39 1 5.8889 1.7405 -0.4732 40 1 7.2175 2.7426 0.1583 41 1 6.9295 4.6740 3.5708 42 1 7.5675 3.3349 2.5870 43 1 5.0274 3.2494 4.0799 44 1 6.9667 3.2429 5.5442 45 1 7.6052 1.9037 4.5606 46 1 7.3219 1.0789 7.1106 47 1 7.8342 -0.7114 9.8806 48 1 6.3132 5.2047 -0.1772 49 1 8.5278 4.7019 1.9855 50 1 8.8000 5.3785 0.2916 51 1 7.2689 7.3302 0.8244 52 1 6.9960 6.6546 2.5185 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755567200.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:59 Heat of formation + Delta-G solvation = -21.517376 kcal Electronic energy + Delta-G solvation = -29917.995782 eV Core-core repulsion = 25919.130601 eV Total energy + Delta-G solvation = -3998.865181 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.37290 -38.73490 -38.08264 -36.84375 -35.32052 -34.59165 -33.73812 -32.11276 -31.19995 -29.59475 -26.98256 -26.34895 -24.72081 -24.04069 -23.51959 -23.04049 -22.35349 -20.69617 -19.84156 -19.21985 -18.69996 -17.84355 -17.24283 -16.80843 -15.86480 -15.78266 -15.43835 -15.24579 -14.76684 -14.58602 -14.49501 -14.20443 -13.95956 -13.83838 -13.35244 -13.22971 -13.13038 -12.93208 -12.55951 -12.48127 -12.20471 -12.16716 -12.15015 -11.88616 -11.62051 -11.46605 -11.39422 -11.34983 -11.24598 -11.09213 -11.01759 -10.68856 -10.37697 -10.33903 -10.20190 -10.18176 -10.01409 -9.55339 -9.48370 -8.57291 -8.37231 -8.01278 -7.92804 -6.39582 -3.80156 2.62545 2.95989 3.19411 3.27716 3.34127 3.60206 3.79718 3.94020 4.07799 4.27956 4.41848 4.58599 4.68573 4.71549 4.73721 4.76473 4.94791 5.06645 5.09385 5.12337 5.20460 5.25543 5.27752 5.30447 5.36778 5.40644 5.43740 5.49729 5.51334 5.59608 5.68569 5.70397 5.79873 5.81857 5.85740 5.89184 5.91010 5.93290 5.97178 5.99427 6.03338 6.09096 6.28778 6.33071 6.61369 7.24250 7.50141 7.57429 7.68507 8.09026 8.35646 8.64275 9.20628 9.57043 10.09138 10.78318 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008111 B = 0.003209 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3451.458474 B = 8724.143229 C =11646.920291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.096 4.096 3 C -0.115 4.115 4 H 0.117 0.883 5 C -0.153 4.153 6 C -0.183 4.183 7 H 0.124 0.876 8 C 0.554 3.446 9 O -0.545 6.545 10 N -0.587 5.587 11 C 0.082 3.918 12 C 0.174 3.826 13 H 0.103 0.897 14 C 0.046 3.954 15 N -0.661 5.661 16 C 0.052 3.948 17 C 0.441 3.559 18 O -0.579 6.579 19 N -0.565 5.565 20 C -0.298 4.298 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.929 3.071 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C -0.160 4.160 29 C -0.184 4.184 30 C -0.173 4.173 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.036 0.964 42 H 0.078 0.922 43 H 0.351 0.649 44 H 0.041 0.959 45 H 0.084 0.916 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.107 0.893 49 H 0.103 0.897 50 H 0.093 0.907 51 H 0.094 0.906 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.294 8.085 -21.450 22.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.133 4.133 3 C -0.133 4.133 4 H 0.135 0.865 5 C -0.191 4.191 6 C -0.204 4.204 7 H 0.141 0.859 8 C 0.343 3.657 9 O -0.422 6.422 10 N -0.318 5.318 11 C -0.061 4.061 12 C 0.070 3.930 13 H 0.120 0.880 14 C -0.084 4.084 15 N -0.294 5.294 16 C -0.081 4.081 17 C 0.227 3.773 18 O -0.463 6.463 19 N -0.202 5.202 20 C -0.427 4.427 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.545 5.545 24 Si 0.756 3.244 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.179 4.179 29 C -0.221 4.221 30 C -0.210 4.210 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.114 0.886 37 H 0.119 0.881 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.054 0.946 42 H 0.096 0.904 43 H 0.170 0.830 44 H 0.059 0.941 45 H 0.102 0.898 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.125 0.875 49 H 0.121 0.879 50 H 0.111 0.889 51 H 0.113 0.887 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.623 7.667 -21.625 22.953 hybrid contribution 0.524 0.233 1.374 1.489 sum -0.099 7.900 -20.251 21.737 Atomic orbital electron populations 1.21732 0.95303 1.01565 1.02005 1.21158 0.96196 0.93703 1.02286 1.22446 0.91753 0.98714 1.00436 0.86535 1.23077 1.02890 1.02705 0.90395 1.22276 0.97722 0.99190 1.01252 0.85851 1.19523 0.81716 0.85123 0.79364 1.90660 1.53598 1.48947 1.49017 1.47330 1.05441 1.25899 1.53143 1.21718 0.92549 0.93917 0.97894 1.20486 0.97118 0.85590 0.89799 0.87952 1.22472 0.97231 0.94472 0.94242 1.60021 1.06533 1.40746 1.22092 1.21664 0.96999 0.97692 0.91741 1.19813 0.88341 0.85832 0.83340 1.90545 1.19744 1.65155 1.70828 1.41858 1.16507 1.39328 1.22534 1.19701 0.99558 1.18515 1.04948 0.87974 1.25246 0.96248 0.98824 0.97643 1.69615 1.14344 1.44360 1.26174 0.85867 0.79860 0.80196 0.78435 1.20407 1.20950 1.19413 1.22616 0.95402 0.99555 1.00353 1.23195 0.92617 1.02414 1.03859 1.22968 1.03975 0.92089 1.01995 0.92687 0.92368 0.92790 0.91871 0.90986 0.88649 0.88087 0.91898 0.91403 0.91335 0.94612 0.90394 0.82983 0.94091 0.89814 0.77535 0.91930 0.87470 0.87908 0.88886 0.88719 0.88563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.87 37.16 0.37 -1.02 16 2 C -0.10 -0.98 6.22 -26.73 -0.17 -1.14 16 3 C -0.11 -1.34 5.25 -90.62 -0.48 -1.81 16 4 H 0.12 1.58 7.60 -51.93 -0.39 1.19 16 5 C -0.15 -1.46 9.88 -26.73 -0.26 -1.72 16 6 C -0.18 -2.20 4.52 -91.77 -0.41 -2.62 16 7 H 0.12 1.37 7.26 -51.93 -0.38 1.00 16 8 C 0.55 8.20 7.46 -10.99 -0.08 8.12 16 9 O -0.54 -10.00 15.59 5.55 0.09 -9.91 16 10 N -0.59 -7.33 2.48 -173.93 -0.43 -7.76 16 11 C 0.08 0.80 9.17 59.84 0.55 1.35 16 12 C 0.17 2.10 2.67 -67.93 -0.18 1.92 16 13 H 0.10 1.49 6.90 -51.93 -0.36 1.13 16 14 C 0.05 0.58 3.61 -3.82 -0.01 0.56 16 15 N -0.66 -11.14 5.85 -115.05 -0.67 -11.82 16 16 C 0.05 0.93 6.17 -4.97 -0.03 0.90 16 17 C 0.44 10.68 7.82 -10.98 -0.09 10.59 16 18 O -0.58 -16.26 15.78 5.55 0.09 -16.17 16 19 N -0.57 -14.58 5.29 -10.96 -0.06 -14.64 16 20 C -0.30 -8.45 9.68 -14.94 -0.14 -8.60 16 21 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.84 13.05 55.50 0.72 -24.12 16 24 Si 0.93 21.37 29.55 -169.99 -5.02 16.34 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 28 C -0.16 -1.49 4.96 -90.62 -0.45 -1.93 16 29 C -0.18 -1.45 9.51 -26.69 -0.25 -1.70 16 30 C -0.17 -1.43 9.94 -26.69 -0.27 -1.69 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.54 7.88 -51.93 -0.41 0.13 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.10 0.75 8.03 -51.93 -0.42 0.33 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.54 6.64 -51.93 -0.34 0.20 16 40 H 0.07 0.55 7.20 -51.93 -0.37 0.18 16 41 H 0.04 0.42 7.44 -51.93 -0.39 0.03 16 42 H 0.08 0.89 6.30 -51.93 -0.33 0.57 16 43 H 0.35 6.66 8.43 -39.29 -0.33 6.33 16 44 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 46 H 0.39 9.63 7.90 -40.82 -0.32 9.31 16 47 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 48 H 0.11 1.00 8.14 -51.93 -0.42 0.57 16 49 H 0.10 0.84 5.80 -51.93 -0.30 0.54 16 50 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 51 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 52 H 0.10 0.82 7.66 -51.93 -0.40 0.43 16 LS Contribution 421.20 15.07 6.35 6.35 Total: -1.00 -33.46 421.20 -9.85 -43.31 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: -8.90 Total: 16.71 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: -2.01 Total: 1.70 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: -0.44 Total: -58.33 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: 0.17 Total: -26.09 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -33.46 -9.85 -43.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755567200.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.790 kcal (2) G-P(sol) polarization free energy of solvation -33.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds