Wall clock time and date at job start Tue Mar 31 2020 19:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47344 * 2 1 4 4 H 1.09000 * 115.55254 * 29.32853 * 3 2 1 5 5 C 1.53006 * 117.51823 * 243.63076 * 3 2 1 6 6 C 1.52999 * 60.00044 * 252.51746 * 5 3 2 7 7 H 1.09000 * 117.51670 * 107.47663 * 6 5 3 8 8 C 1.50700 * 117.50098 * 252.50850 * 6 5 3 9 9 O 1.21278 * 119.99676 * 68.62149 * 8 6 5 10 10 N 1.34770 * 120.00271 * 248.62134 * 8 6 5 11 11 C 1.46504 * 119.99703 * 0.02562 * 10 8 6 12 12 C 1.46497 * 120.00337 * 179.97438 * 10 8 6 13 13 H 1.09003 * 109.46746 * 0.02562 * 12 10 8 14 14 C 1.52997 * 109.47385 * 240.00040 * 12 10 8 15 15 N 1.46904 * 109.46950 * 55.00219 * 14 12 10 16 16 C 1.46899 * 111.00029 * 180.02562 * 15 14 12 17 17 C 1.50703 * 109.47107 * 179.97438 * 16 15 14 18 18 O 1.21286 * 120.00016 * 359.97438 * 17 16 15 19 19 N 1.34777 * 120.00161 * 180.02562 * 17 16 15 20 20 C 1.37091 * 120.00108 * 180.02562 * 19 17 16 21 21 H 1.07995 * 120.00333 * 359.97438 * 20 19 17 22 22 C 1.38953 * 119.99712 * 179.97438 * 20 19 17 23 23 N 1.31411 * 120.00268 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99720 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47452 * 60.00137 * 24 22 20 26 26 H 1.48505 * 109.46988 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47061 * 299.99710 * 24 22 20 28 28 C 1.53005 * 109.46893 * 120.00086 * 12 10 8 29 29 C 1.53002 * 117.49692 * 248.62075 * 28 12 10 30 30 C 1.52998 * 60.00017 * 252.51714 * 29 28 12 31 31 H 1.09005 * 109.46975 * 60.00020 * 1 2 3 32 32 H 1.09004 * 109.47548 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47040 * 300.00381 * 1 2 3 34 34 H 1.09010 * 109.46936 * 240.00099 * 2 1 3 35 35 H 1.08995 * 109.47017 * 120.00527 * 2 1 3 36 36 H 1.08998 * 117.49693 * 145.03034 * 5 3 2 37 37 H 1.09002 * 117.49730 * 0.02562 * 5 3 2 38 38 H 1.09001 * 109.47101 * 269.99499 * 11 10 8 39 39 H 1.08998 * 109.47570 * 29.99850 * 11 10 8 40 40 H 1.09004 * 109.47025 * 150.00291 * 11 10 8 41 41 H 1.08995 * 109.47319 * 295.00148 * 14 12 10 42 42 H 1.09003 * 109.47435 * 174.99473 * 14 12 10 43 43 H 1.00908 * 110.99583 * 303.94989 * 15 14 12 44 44 H 1.09002 * 109.47043 * 299.99792 * 16 15 14 45 45 H 1.09001 * 109.47354 * 59.99854 * 16 15 14 46 46 H 0.97005 * 119.99463 * 359.97438 * 19 17 16 47 47 H 0.96996 * 119.99832 * 179.97438 * 23 22 20 48 48 H 1.08996 * 115.55097 * 34.33128 * 28 12 10 49 49 H 1.09002 * 117.49945 * 0.02562 * 29 28 12 50 50 H 1.09003 * 117.49618 * 145.01962 * 29 28 12 51 51 H 1.09005 * 117.49563 * 252.51551 * 30 29 28 52 52 H 1.08998 * 117.50306 * 107.49401 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.3885 2.1715 0.4817 5 6 2.8439 1.9080 -1.2158 6 6 3.5502 1.6578 0.1182 7 1 4.1803 0.7718 0.1960 8 6 4.0230 2.8616 0.8918 9 8 3.2160 3.6160 1.3922 10 7 5.3425 3.0997 1.0275 11 6 6.3173 2.1886 0.4226 12 6 5.8021 4.2702 1.7791 13 1 4.9404 4.8247 2.1507 14 6 6.6323 5.1712 0.8625 15 7 5.8464 5.5128 -0.3307 16 6 6.6136 6.3785 -1.2362 17 6 5.7772 6.7066 -2.4461 18 8 4.6528 6.2625 -2.5447 19 7 6.2789 7.4926 -3.4193 20 6 5.5178 7.7914 -4.5196 21 1 4.5164 7.3967 -4.6070 22 6 6.0350 8.6023 -5.5226 23 7 7.2537 9.0822 -5.4166 24 14 4.9977 9.0101 -7.0217 25 1 3.7626 9.7140 -6.5925 26 1 5.7735 9.8845 -7.9375 27 1 4.6326 7.7553 -7.7272 28 6 6.6616 3.8131 2.9595 29 6 6.0931 4.0117 4.3660 30 6 7.2404 4.8956 3.8728 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8933 -0.5139 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 2.7212 2.9433 -1.5338 37 1 3.0092 1.1867 -2.0161 38 1 6.5714 1.4034 1.1346 39 1 5.8887 1.7412 -0.4742 40 1 7.2173 2.7435 0.1572 41 1 7.5394 4.6469 0.5623 42 1 6.8994 6.0839 1.3951 43 1 5.5317 4.6806 -0.8068 44 1 6.8811 7.2996 -0.7184 45 1 7.5204 5.8622 -1.5510 46 1 7.1783 7.8474 -3.3406 47 1 7.6147 9.6479 -6.1169 48 1 7.2695 2.9258 2.7826 49 1 5.1066 4.4677 4.4504 50 1 6.3268 3.2549 5.1148 51 1 8.2291 4.7202 4.2971 52 1 7.0090 5.9333 3.6327 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755567201.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:03 Heat of formation + Delta-G solvation = -24.237417 kcal Electronic energy + Delta-G solvation = -29895.433937 eV Core-core repulsion = 25896.450805 eV Total energy + Delta-G solvation = -3998.983131 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.43099 -38.57232 -38.05925 -36.82923 -35.64830 -34.54258 -33.73939 -32.19211 -31.20573 -29.77124 -27.07957 -26.41917 -24.73455 -24.04436 -23.62966 -22.73634 -22.04234 -20.71786 -20.09268 -19.21748 -18.94222 -17.87908 -17.42653 -16.65178 -16.19358 -15.65408 -15.40011 -15.20660 -14.75769 -14.58488 -14.47800 -14.36816 -14.05053 -13.87635 -13.53226 -13.30175 -13.08530 -12.70792 -12.63592 -12.55561 -12.25522 -12.19645 -12.14614 -11.89576 -11.66970 -11.53563 -11.48096 -11.45036 -11.15816 -11.14250 -10.97425 -10.66205 -10.42796 -10.33594 -10.22477 -10.17942 -10.07873 -9.62075 -9.47772 -8.74986 -8.37730 -7.99935 -7.92784 -6.39662 -3.80276 2.56829 2.83650 3.21621 3.26879 3.31631 3.58537 3.79606 3.93720 4.08322 4.26181 4.38354 4.64375 4.69013 4.72056 4.75705 4.79596 4.90677 4.98285 5.06267 5.09421 5.13659 5.16975 5.18530 5.25209 5.27767 5.32647 5.44268 5.46188 5.51915 5.59518 5.64919 5.68731 5.71415 5.76132 5.79572 5.83750 5.88641 5.95225 5.99277 6.00128 6.05716 6.12942 6.28121 6.29178 6.53305 7.25036 7.36365 7.57039 7.70484 8.08576 8.26637 8.64081 9.20209 9.56754 10.08801 10.78170 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008705 B = 0.003054 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3215.843990 B = 9167.387498 C =11834.431389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.093 4.093 3 C -0.121 4.121 4 H 0.117 0.883 5 C -0.144 4.144 6 C -0.192 4.192 7 H 0.119 0.881 8 C 0.551 3.449 9 O -0.529 6.529 10 N -0.606 5.606 11 C 0.075 3.925 12 C 0.174 3.826 13 H 0.110 0.890 14 C 0.053 3.947 15 N -0.663 5.663 16 C 0.051 3.949 17 C 0.441 3.559 18 O -0.580 6.580 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.930 3.070 25 H -0.273 1.273 26 H -0.285 1.285 27 H -0.274 1.274 28 C -0.164 4.164 29 C -0.174 4.174 30 C -0.172 4.172 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.108 0.892 37 H 0.103 0.897 38 H 0.054 0.946 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.029 0.971 42 H 0.082 0.918 43 H 0.348 0.652 44 H 0.086 0.914 45 H 0.041 0.959 46 H 0.392 0.608 47 H 0.272 0.728 48 H 0.105 0.895 49 H 0.097 0.903 50 H 0.092 0.908 51 H 0.095 0.905 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.764 -17.463 15.446 23.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.130 4.130 3 C -0.139 4.139 4 H 0.135 0.865 5 C -0.182 4.182 6 C -0.213 4.213 7 H 0.137 0.863 8 C 0.339 3.661 9 O -0.405 6.405 10 N -0.340 5.340 11 C -0.069 4.069 12 C 0.071 3.929 13 H 0.128 0.872 14 C -0.077 4.077 15 N -0.296 5.296 16 C -0.082 4.082 17 C 0.227 3.773 18 O -0.464 6.464 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.545 5.545 24 Si 0.757 3.243 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.184 4.184 29 C -0.211 4.211 30 C -0.209 4.209 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.126 0.874 37 H 0.121 0.879 38 H 0.073 0.927 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.047 0.953 42 H 0.101 0.899 43 H 0.168 0.832 44 H 0.104 0.896 45 H 0.059 0.941 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.123 0.877 49 H 0.115 0.885 50 H 0.110 0.890 51 H 0.113 0.887 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.652 -16.704 15.795 22.998 hybrid contribution 1.177 -0.185 -1.128 1.641 sum 0.525 -16.889 14.668 22.375 Atomic orbital electron populations 1.21741 0.95224 1.01443 1.02311 1.21136 0.96266 0.93778 1.01855 1.22474 0.91279 0.98463 1.01692 0.86476 1.23169 1.01093 1.04028 0.89864 1.22288 0.97464 0.98704 1.02847 0.86264 1.19614 0.81651 0.85335 0.79506 1.90688 1.53301 1.48187 1.48296 1.47637 1.05730 1.26544 1.54045 1.21787 0.93261 0.93600 0.98215 1.20662 0.97430 0.85458 0.89384 0.87214 1.22262 0.94204 0.98589 0.92692 1.59995 1.39110 1.22720 1.07818 1.21680 0.94611 0.98131 0.93760 1.19806 0.88420 0.84275 0.84843 1.90529 1.19970 1.56337 1.79573 1.41851 1.16555 1.43821 1.17913 1.19651 0.99344 1.27888 0.95928 0.88013 1.25251 0.96346 0.96839 0.99499 1.69604 1.15106 1.34486 1.35275 0.85926 0.79363 0.78483 0.80497 1.19865 1.20991 1.19933 1.22557 1.03110 1.01213 0.91476 1.23007 0.98697 1.02973 0.96446 1.22945 0.98133 0.96647 1.03182 0.92354 0.92782 0.92534 0.91731 0.91710 0.87393 0.87915 0.92746 0.90580 0.91067 0.95275 0.89947 0.83176 0.89620 0.94124 0.77506 0.91859 0.87680 0.88483 0.88991 0.88673 0.88309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.87 37.16 0.37 -0.84 16 2 C -0.09 -0.79 6.22 -26.73 -0.17 -0.96 16 3 C -0.12 -1.35 5.25 -90.62 -0.48 -1.82 16 4 H 0.12 1.55 7.60 -51.93 -0.39 1.16 16 5 C -0.14 -1.69 9.88 -26.73 -0.26 -1.96 16 6 C -0.19 -2.17 4.52 -91.77 -0.41 -2.58 16 7 H 0.12 1.04 7.26 -51.93 -0.38 0.66 16 8 C 0.55 7.91 7.46 -10.99 -0.08 7.83 16 9 O -0.53 -9.74 15.58 5.56 0.09 -9.66 16 10 N -0.61 -7.29 1.83 -173.93 -0.32 -7.61 16 11 C 0.07 0.65 8.96 59.85 0.54 1.18 16 12 C 0.17 2.15 2.57 -67.93 -0.17 1.97 16 13 H 0.11 1.69 6.66 -51.93 -0.35 1.35 16 14 C 0.05 0.68 4.75 -3.82 -0.02 0.67 16 15 N -0.66 -11.49 6.12 -115.05 -0.70 -12.19 16 16 C 0.05 0.93 6.17 -4.98 -0.03 0.90 16 17 C 0.44 10.71 7.82 -10.98 -0.09 10.63 16 18 O -0.58 -16.25 15.78 5.55 0.09 -16.16 16 19 N -0.56 -14.57 5.29 -10.97 -0.06 -14.62 16 20 C -0.30 -8.46 9.68 -14.94 -0.14 -8.60 16 21 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.81 13.05 55.50 0.72 -24.08 16 24 Si 0.93 21.31 29.55 -169.99 -5.02 16.29 16 25 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 28 C -0.16 -1.56 5.22 -90.62 -0.47 -2.03 16 29 C -0.17 -1.60 10.18 -26.73 -0.27 -1.87 16 30 C -0.17 -1.45 9.79 -26.73 -0.26 -1.71 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.49 7.88 -51.92 -0.41 0.08 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.11 1.60 8.14 -51.93 -0.42 1.17 16 37 H 0.10 0.99 8.03 -51.93 -0.42 0.58 16 38 H 0.05 0.37 8.07 -51.93 -0.42 -0.05 16 39 H 0.08 0.62 6.64 -51.93 -0.34 0.28 16 40 H 0.07 0.60 6.53 -51.93 -0.34 0.26 16 41 H 0.03 0.34 6.88 -51.93 -0.36 -0.02 16 42 H 0.08 1.01 7.47 -51.93 -0.39 0.62 16 43 H 0.35 6.37 7.55 -39.29 -0.30 6.07 16 44 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 45 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.39 9.64 7.90 -40.82 -0.32 9.31 16 47 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 48 H 0.11 0.90 7.43 -51.93 -0.39 0.51 16 49 H 0.10 1.00 8.05 -51.93 -0.42 0.58 16 50 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 51 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 52 H 0.10 0.87 7.66 -51.93 -0.40 0.47 16 LS Contribution 422.70 15.07 6.37 6.37 Total: -1.00 -33.76 422.70 -9.82 -43.58 By element: Atomic # 1 Polarization: 25.71 SS G_CDS: -8.93 Total: 16.78 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -2.06 Total: 1.30 kcal Atomic # 7 Polarization: -58.15 SS G_CDS: -0.36 Total: -58.51 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: 0.17 Total: -25.82 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -33.76 -9.82 -43.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755567201.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.338 kcal (2) G-P(sol) polarization free energy of solvation -33.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds