Wall clock time and date at job start Tue Mar 31 2020 19:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47344 * 2 1 4 4 H 1.09000 * 115.55254 * 29.32853 * 3 2 1 5 5 C 1.53006 * 117.51823 * 243.63076 * 3 2 1 6 6 C 1.52999 * 60.00044 * 252.51746 * 5 3 2 7 7 H 1.09000 * 117.51670 * 107.47663 * 6 5 3 8 8 C 1.50700 * 117.50098 * 252.50850 * 6 5 3 9 9 O 1.21278 * 119.99676 * 68.62149 * 8 6 5 10 10 N 1.34770 * 120.00271 * 248.62134 * 8 6 5 11 11 C 1.46504 * 119.99703 * 0.02562 * 10 8 6 12 12 C 1.46497 * 120.00337 * 179.97438 * 10 8 6 13 13 H 1.09003 * 109.46746 * 0.02562 * 12 10 8 14 14 C 1.52997 * 109.47385 * 240.00040 * 12 10 8 15 15 N 1.46904 * 109.46950 * 55.00219 * 14 12 10 16 16 C 1.46899 * 111.00029 * 180.02562 * 15 14 12 17 17 C 1.50703 * 109.47107 * 179.97438 * 16 15 14 18 18 O 1.21286 * 120.00016 * 359.97438 * 17 16 15 19 19 N 1.34777 * 120.00161 * 180.02562 * 17 16 15 20 20 C 1.37091 * 120.00108 * 180.02562 * 19 17 16 21 21 H 1.07995 * 120.00333 * 359.97438 * 20 19 17 22 22 C 1.38953 * 119.99712 * 179.97438 * 20 19 17 23 23 N 1.31411 * 120.00268 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99720 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47452 * 60.00137 * 24 22 20 26 26 H 1.48505 * 109.46988 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47061 * 299.99710 * 24 22 20 28 28 C 1.53005 * 109.46893 * 120.00086 * 12 10 8 29 29 C 1.53002 * 117.49692 * 248.62075 * 28 12 10 30 30 C 1.52998 * 60.00017 * 252.51714 * 29 28 12 31 31 H 1.09005 * 109.46975 * 60.00020 * 1 2 3 32 32 H 1.09004 * 109.47548 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47040 * 300.00381 * 1 2 3 34 34 H 1.09010 * 109.46936 * 240.00099 * 2 1 3 35 35 H 1.08995 * 109.47017 * 120.00527 * 2 1 3 36 36 H 1.08998 * 117.49693 * 145.03034 * 5 3 2 37 37 H 1.09002 * 117.49730 * 0.02562 * 5 3 2 38 38 H 1.09001 * 109.47101 * 269.99499 * 11 10 8 39 39 H 1.08998 * 109.47570 * 29.99850 * 11 10 8 40 40 H 1.09004 * 109.47025 * 150.00291 * 11 10 8 41 41 H 1.08995 * 109.47319 * 295.00148 * 14 12 10 42 42 H 1.09003 * 109.47435 * 174.99473 * 14 12 10 43 43 H 1.00908 * 110.99583 * 303.94989 * 15 14 12 44 44 H 1.09002 * 109.47043 * 299.99792 * 16 15 14 45 45 H 1.09001 * 109.47354 * 59.99854 * 16 15 14 46 46 H 0.97005 * 119.99463 * 359.97438 * 19 17 16 47 47 H 0.96996 * 119.99832 * 179.97438 * 23 22 20 48 48 H 1.08996 * 115.55097 * 34.33128 * 28 12 10 49 49 H 1.09002 * 117.49945 * 0.02562 * 29 28 12 50 50 H 1.09003 * 117.49618 * 145.01962 * 29 28 12 51 51 H 1.09005 * 117.49563 * 252.51551 * 30 29 28 52 52 H 1.08998 * 117.50306 * 107.49401 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.3885 2.1715 0.4817 5 6 2.8439 1.9080 -1.2158 6 6 3.5502 1.6578 0.1182 7 1 4.1803 0.7718 0.1960 8 6 4.0230 2.8616 0.8918 9 8 3.2160 3.6160 1.3922 10 7 5.3425 3.0997 1.0275 11 6 6.3173 2.1886 0.4226 12 6 5.8021 4.2702 1.7791 13 1 4.9404 4.8247 2.1507 14 6 6.6323 5.1712 0.8625 15 7 5.8464 5.5128 -0.3307 16 6 6.6136 6.3785 -1.2362 17 6 5.7772 6.7066 -2.4461 18 8 4.6528 6.2625 -2.5447 19 7 6.2789 7.4926 -3.4193 20 6 5.5178 7.7914 -4.5196 21 1 4.5164 7.3967 -4.6070 22 6 6.0350 8.6023 -5.5226 23 7 7.2537 9.0822 -5.4166 24 14 4.9977 9.0101 -7.0217 25 1 3.7626 9.7140 -6.5925 26 1 5.7735 9.8845 -7.9375 27 1 4.6326 7.7553 -7.7272 28 6 6.6616 3.8131 2.9595 29 6 6.0931 4.0117 4.3660 30 6 7.2404 4.8956 3.8728 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8933 -0.5139 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 2.7212 2.9433 -1.5338 37 1 3.0092 1.1867 -2.0161 38 1 6.5714 1.4034 1.1346 39 1 5.8887 1.7412 -0.4742 40 1 7.2173 2.7435 0.1572 41 1 7.5394 4.6469 0.5623 42 1 6.8994 6.0839 1.3951 43 1 5.5317 4.6806 -0.8068 44 1 6.8811 7.2996 -0.7184 45 1 7.5204 5.8622 -1.5510 46 1 7.1783 7.8474 -3.3406 47 1 7.6147 9.6479 -6.1169 48 1 7.2695 2.9258 2.7826 49 1 5.1066 4.4677 4.4504 50 1 6.3268 3.2549 5.1148 51 1 8.2291 4.7202 4.2971 52 1 7.0090 5.9333 3.6327 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755567201.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:02 Heat of formation + Delta-G solvation = -46.282268 kcal Electronic energy + Delta-G solvation = -29896.389873 eV Core-core repulsion = 25896.450805 eV Total energy + Delta-G solvation = -3999.939068 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.45689 -40.18057 -39.28970 -37.77454 -36.78521 -36.03943 -35.49019 -33.29262 -32.93069 -30.92153 -28.25462 -27.66307 -26.21237 -25.19814 -24.58514 -23.60987 -22.93378 -21.56629 -21.25414 -20.81587 -19.98507 -19.88304 -18.46631 -17.89496 -17.52706 -17.09384 -16.56845 -16.44632 -16.10259 -15.89363 -15.57691 -15.39878 -15.38003 -15.04423 -14.95482 -14.52445 -14.22987 -13.89679 -13.56263 -13.53912 -13.38685 -13.37206 -13.18655 -13.01722 -12.99471 -12.98009 -12.77137 -12.45835 -12.40642 -12.19552 -12.14380 -12.07837 -11.93693 -11.52789 -11.40354 -11.21885 -11.01105 -10.95850 -10.68546 -10.39497 -10.03866 -9.67793 -9.29937 -8.48461 -5.97343 1.38043 1.40027 1.49478 1.51032 1.91357 2.02631 2.27433 2.73784 2.86283 2.99255 3.18500 3.42733 3.50872 3.76224 3.82165 3.84356 3.92432 4.06779 4.09380 4.13610 4.22939 4.25054 4.26491 4.34680 4.42520 4.47150 4.48461 4.53767 4.56770 4.63953 4.73343 4.77808 4.80317 4.84192 4.91103 4.93695 4.99704 5.04277 5.13745 5.21503 5.24549 5.28648 5.29361 5.38622 5.48487 5.60365 5.85842 6.07885 6.31026 6.40050 6.58419 7.10617 7.20854 7.53542 8.09729 8.68759 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008705 B = 0.003054 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3215.843990 B = 9167.387498 C =11834.431389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.085 4.085 3 C -0.120 4.120 4 H 0.085 0.915 5 C -0.148 4.148 6 C -0.182 4.182 7 H 0.157 0.843 8 C 0.536 3.464 9 O -0.586 6.586 10 N -0.602 5.602 11 C 0.066 3.934 12 C 0.176 3.824 13 H 0.068 0.932 14 C 0.057 3.943 15 N -0.686 5.686 16 C 0.066 3.934 17 C 0.436 3.564 18 O -0.625 6.625 19 N -0.571 5.571 20 C -0.336 4.336 21 H 0.076 0.924 22 C -0.011 4.011 23 N -0.919 5.919 24 Si 0.992 3.008 25 H -0.274 1.274 26 H -0.268 1.268 27 H -0.270 1.270 28 C -0.162 4.162 29 C -0.181 4.181 30 C -0.159 4.159 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.047 0.953 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.131 0.869 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.057 0.943 42 H 0.090 0.910 43 H 0.340 0.660 44 H 0.103 0.897 45 H 0.071 0.929 46 H 0.397 0.603 47 H 0.279 0.721 48 H 0.126 0.874 49 H 0.075 0.925 50 H 0.109 0.891 51 H 0.118 0.882 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.165 -19.394 15.562 25.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.122 4.122 3 C -0.139 4.139 4 H 0.103 0.897 5 C -0.186 4.186 6 C -0.203 4.203 7 H 0.174 0.826 8 C 0.326 3.674 9 O -0.466 6.466 10 N -0.333 5.333 11 C -0.075 4.075 12 C 0.072 3.928 13 H 0.087 0.913 14 C -0.072 4.072 15 N -0.319 5.319 16 C -0.066 4.066 17 C 0.223 3.777 18 O -0.511 6.511 19 N -0.208 5.208 20 C -0.465 4.465 21 H 0.094 0.906 22 C -0.211 4.211 23 N -0.560 5.560 24 Si 0.815 3.185 25 H -0.200 1.200 26 H -0.192 1.192 27 H -0.195 1.195 28 C -0.181 4.181 29 C -0.218 4.218 30 C -0.197 4.197 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.066 0.934 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.149 0.851 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.098 0.902 41 H 0.075 0.925 42 H 0.108 0.892 43 H 0.159 0.841 44 H 0.121 0.879 45 H 0.089 0.911 46 H 0.231 0.769 47 H 0.088 0.912 48 H 0.144 0.856 49 H 0.093 0.907 50 H 0.127 0.873 51 H 0.136 0.864 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.824 -18.638 15.924 24.582 hybrid contribution 0.430 0.460 -1.116 1.282 sum 2.254 -18.178 14.808 23.554 Atomic orbital electron populations 1.21759 0.95205 1.02367 1.01551 1.21138 0.96254 0.91586 1.03252 1.22476 0.91045 0.99649 1.00716 0.89689 1.23091 1.02200 1.02361 0.90941 1.22385 0.97931 0.98540 1.01454 0.82570 1.20251 0.82148 0.85743 0.79242 1.90659 1.54904 1.50230 1.50788 1.47749 1.05646 1.26635 1.53312 1.22076 0.92534 0.93753 0.99151 1.20540 0.96339 0.85500 0.90418 0.91329 1.22339 0.94561 0.99444 0.90878 1.59970 1.40664 1.22616 1.08671 1.21540 0.94175 0.99542 0.91339 1.20892 0.88367 0.82629 0.85796 1.90504 1.22263 1.57631 1.80706 1.41900 1.16601 1.44370 1.17942 1.19606 0.99146 1.29811 0.97952 0.90600 1.26023 0.97494 0.95913 1.01643 1.69658 1.15889 1.34262 1.36175 0.85012 0.77843 0.78454 0.77168 1.19981 1.19220 1.19532 1.22471 1.03059 1.02424 0.90153 1.23018 0.98182 1.03828 0.96821 1.23024 0.98742 0.95949 1.01954 0.93124 0.90923 0.93422 0.89960 0.90465 0.91633 0.85134 0.89847 0.89934 0.90246 0.92525 0.89194 0.84119 0.87857 0.91122 0.76904 0.91204 0.85570 0.90685 0.87292 0.86381 0.89006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.87 71.98 0.71 -1.64 16 2 C -0.09 -1.32 6.22 30.59 0.19 -1.13 16 3 C -0.12 -2.76 5.25 -10.79 -0.06 -2.82 16 4 H 0.08 2.51 7.60 -2.39 -0.02 2.49 16 5 C -0.15 -3.60 9.88 30.60 0.30 -3.30 16 6 C -0.18 -4.06 4.52 -11.54 -0.05 -4.11 16 7 H 0.16 2.26 7.26 -2.39 -0.02 2.24 16 8 C 0.54 15.99 7.46 87.66 0.65 16.65 16 9 O -0.59 -23.47 15.58 -3.02 -0.05 -23.51 16 10 N -0.60 -14.13 1.83 -822.59 -1.51 -15.63 16 11 C 0.07 0.97 8.96 127.77 1.14 2.11 16 12 C 0.18 4.29 2.57 44.99 0.12 4.40 16 13 H 0.07 2.27 6.66 -2.39 -0.02 2.25 16 14 C 0.06 1.39 4.75 86.30 0.41 1.80 16 15 N -0.69 -23.76 6.12 -517.92 -3.17 -26.93 16 16 C 0.07 2.37 6.17 85.56 0.53 2.89 16 17 C 0.44 21.60 7.82 87.66 0.69 22.28 16 18 O -0.62 -36.52 15.78 -3.05 -0.05 -36.57 16 19 N -0.57 -29.99 5.29 -306.99 -1.62 -31.62 16 20 C -0.34 -19.50 9.68 84.04 0.81 -18.69 16 21 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 22 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 23 N -0.92 -49.96 13.05 21.66 0.28 -49.68 16 24 Si 0.99 43.55 29.55 68.60 2.03 45.58 16 25 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 26 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 27 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 28 C -0.16 -2.76 5.22 -10.79 -0.06 -2.82 16 29 C -0.18 -3.15 10.18 30.59 0.31 -2.84 16 30 C -0.16 -2.35 9.79 30.59 0.30 -2.05 16 31 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 34 H 0.08 1.02 7.88 -2.38 -0.02 1.00 16 35 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.13 2.38 8.03 -2.39 -0.02 2.36 16 38 H 0.08 0.78 8.07 -2.39 -0.02 0.76 16 39 H 0.08 1.12 6.64 -2.39 -0.02 1.11 16 40 H 0.08 1.05 6.53 -2.39 -0.02 1.04 16 41 H 0.06 1.11 6.88 -2.39 -0.02 1.09 16 42 H 0.09 2.06 7.47 -2.39 -0.02 2.04 16 43 H 0.34 12.64 7.55 -89.69 -0.68 11.96 16 44 H 0.10 3.35 8.14 -2.39 -0.02 3.33 16 45 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 46 H 0.40 19.63 7.90 -92.70 -0.73 18.89 16 47 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 48 H 0.13 1.67 7.43 -2.39 -0.02 1.65 16 49 H 0.07 1.63 8.05 -2.39 -0.02 1.61 16 50 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 51 H 0.12 1.25 8.14 -2.38 -0.02 1.23 16 52 H 0.09 1.49 7.66 -2.39 -0.02 1.48 16 Total: -1.00 -78.36 422.70 1.90 -76.46 By element: Atomic # 1 Polarization: 51.75 SS G_CDS: -0.48 Total: 51.27 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: 6.47 Total: 10.63 kcal Atomic # 7 Polarization: -117.84 SS G_CDS: -6.02 Total: -123.86 kcal Atomic # 8 Polarization: -59.99 SS G_CDS: -0.10 Total: -60.08 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -78.36 1.90 -76.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755567201.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.180 kcal (2) G-P(sol) polarization free energy of solvation -78.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds