Wall clock time and date at job start Tue Mar 31 2020 19:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47121 * 2 1 4 4 H 1.08997 * 115.54605 * 29.33705 * 3 2 1 5 5 C 1.53000 * 117.49876 * 243.62433 * 3 2 1 6 6 C 1.53004 * 117.49491 * 175.00224 * 3 2 1 7 7 H 1.08994 * 117.49817 * 359.97438 * 6 3 2 8 8 C 1.50706 * 117.49086 * 214.98093 * 6 3 2 9 9 O 1.21272 * 120.00331 * 0.02562 * 8 6 3 10 10 N 1.34785 * 119.99500 * 180.02562 * 8 6 3 11 11 C 1.48146 * 127.83657 * 0.02562 * 10 8 6 12 12 C 1.54389 * 104.71947 * 219.64948 * 11 10 8 13 13 H 1.09003 * 110.34006 * 95.05014 * 12 11 10 14 14 N 1.46894 * 110.34349 * 217.20375 * 12 11 10 15 15 C 1.46894 * 111.00176 * 273.54609 * 14 12 11 16 16 C 1.50704 * 109.47164 * 179.97438 * 15 14 12 17 17 O 1.21291 * 120.00106 * 0.02562 * 16 15 14 18 18 N 1.34782 * 120.00133 * 179.97438 * 16 15 14 19 19 C 1.37094 * 120.00106 * 180.02562 * 18 16 15 20 20 H 1.08003 * 119.99713 * 0.02562 * 19 18 16 21 21 C 1.38950 * 119.99899 * 180.02562 * 19 18 16 22 22 N 1.31413 * 120.00150 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00041 * 179.97438 * 21 19 18 24 24 H 1.48509 * 109.46929 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47249 * 119.99435 * 23 21 19 26 26 H 1.48495 * 109.47049 * 240.00069 * 23 21 19 27 27 C 1.54289 * 104.96102 * 336.07694 * 12 11 10 28 28 C 1.53002 * 110.34304 * 118.86760 * 27 12 11 29 29 C 1.52997 * 110.34219 * 241.02302 * 27 12 11 30 30 C 1.48427 * 127.97962 * 180.11990 * 10 8 6 31 31 H 1.09006 * 109.47254 * 299.99549 * 1 2 3 32 32 H 1.08995 * 109.47193 * 59.99785 * 1 2 3 33 33 H 1.09001 * 109.47013 * 180.02562 * 1 2 3 34 34 H 1.09006 * 109.47254 * 240.00451 * 2 1 3 35 35 H 1.09001 * 109.47581 * 120.00318 * 2 1 3 36 36 H 1.09001 * 117.49668 * 145.02465 * 5 3 2 37 37 H 1.09001 * 117.49965 * 359.97438 * 5 3 2 38 38 H 1.09002 * 110.40776 * 100.80694 * 11 10 8 39 39 H 1.09002 * 110.40863 * 338.49103 * 11 10 8 40 40 H 1.00906 * 111.00318 * 37.50387 * 14 12 11 41 41 H 1.08997 * 109.47449 * 299.99827 * 15 14 12 42 42 H 1.09004 * 109.47266 * 60.00133 * 15 14 12 43 43 H 0.96999 * 119.99692 * 0.02562 * 18 16 15 44 44 H 0.96997 * 119.99693 * 179.97438 * 22 21 19 45 45 H 1.08998 * 109.46904 * 60.00090 * 28 27 12 46 46 H 1.09003 * 109.46843 * 179.97438 * 28 27 12 47 47 H 1.08994 * 109.47149 * 300.00171 * 28 27 12 48 48 H 1.09006 * 109.47231 * 60.00142 * 29 27 12 49 49 H 1.08999 * 109.46728 * 179.97438 * 29 27 12 50 50 H 1.08997 * 109.47355 * 299.99919 * 29 27 12 51 51 H 1.09004 * 110.39413 * 21.57126 * 30 10 8 52 52 H 1.09006 * 110.49084 * 259.21157 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1715 0.4818 5 6 2.8439 1.9076 -1.2159 6 6 3.5502 1.6578 0.1182 7 1 4.1802 0.7719 0.1964 8 6 4.0228 2.8620 0.8915 9 8 3.2158 3.6163 1.3919 10 7 5.3424 3.1005 1.0268 11 6 6.4698 2.3016 0.4922 12 6 7.5258 2.3108 1.6184 13 1 7.4278 1.4187 2.2370 14 7 8.8779 2.3910 1.0500 15 6 9.3911 1.0544 0.7216 16 6 10.7767 1.1767 0.1417 17 8 11.2867 2.2699 0.0149 18 7 11.4496 0.0714 -0.2352 19 6 12.7102 0.1826 -0.7622 20 1 13.1643 1.1560 -0.8751 21 6 13.4037 -0.9569 -1.1512 22 7 12.8513 -2.1413 -1.0133 23 14 15.1212 -0.8053 -1.8700 24 1 15.5124 0.6265 -1.9195 25 1 16.0818 -1.5521 -1.0188 26 1 15.1344 -1.3694 -3.2436 27 6 7.2156 3.5761 2.4451 28 6 6.8624 3.1975 3.8848 29 6 8.4109 4.5309 2.4250 30 6 5.9992 4.2206 1.7458 31 1 -0.3634 0.5138 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 2.7212 2.9428 -1.5343 37 1 3.0098 1.1858 -2.0156 38 1 6.8709 2.7658 -0.4088 39 1 6.1471 1.2819 0.2822 40 1 8.8949 2.9937 0.2409 41 1 9.4277 0.4469 1.6259 42 1 8.7330 0.5815 -0.0074 43 1 11.0418 -0.8029 -0.1334 44 1 13.3353 -2.9367 -1.2852 45 1 7.7031 2.6733 4.3392 46 1 6.6466 4.1008 4.4555 47 1 5.9866 2.5488 3.8855 48 1 8.6263 4.8219 1.3969 49 1 8.1765 5.4188 3.0121 50 1 9.2814 4.0323 2.8514 51 1 5.3200 4.6489 2.4830 52 1 6.3267 4.9859 1.0421 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755762077.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:35 Heat of formation + Delta-G solvation = -50.823497 kcal Electronic energy + Delta-G solvation = -29640.631885 eV Core-core repulsion = 25640.495895 eV Total energy + Delta-G solvation = -4000.135990 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.67115 -39.19547 -38.11596 -37.04292 -34.64964 -33.89179 -33.55707 -32.33250 -31.25854 -28.91150 -27.44723 -27.22456 -26.02911 -24.35647 -24.12065 -23.57636 -22.36507 -20.81349 -19.53997 -19.27384 -18.83278 -17.93563 -17.39608 -16.42800 -16.12140 -15.69533 -15.38323 -15.05270 -14.85491 -14.57662 -14.39443 -14.17058 -13.96052 -13.90159 -13.81920 -13.20952 -13.13713 -12.95114 -12.81267 -12.45907 -12.41673 -12.29122 -12.13983 -11.85656 -11.70035 -11.67227 -11.56287 -11.53857 -11.36413 -11.11345 -10.96348 -10.73692 -10.61284 -10.58483 -10.37305 -10.35667 -10.25930 -9.96446 -9.55761 -8.95387 -8.50976 -8.11731 -7.99977 -6.45653 -3.86418 2.29183 2.65687 3.13591 3.24642 3.31597 3.50938 3.85706 3.97792 4.10590 4.23796 4.36482 4.43647 4.51945 4.53192 4.72838 4.80333 4.85329 4.97323 5.01099 5.05113 5.09510 5.11668 5.21383 5.24562 5.33626 5.42632 5.44215 5.52852 5.59406 5.60835 5.64480 5.66110 5.71609 5.73805 5.74447 5.80141 5.83945 5.90807 5.97012 6.02921 6.05403 6.19004 6.22386 6.28769 6.61740 7.13094 7.34448 7.51916 7.54264 7.97873 8.02456 8.56818 9.14201 9.50132 10.01099 10.72079 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012081 B = 0.002385 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.223378 B =11735.275234 C =13459.597623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.096 4.096 3 C -0.117 4.117 4 H 0.117 0.883 5 C -0.147 4.147 6 C -0.189 4.189 7 H 0.123 0.877 8 C 0.565 3.435 9 O -0.545 6.545 10 N -0.615 5.615 11 C 0.070 3.930 12 C 0.082 3.918 13 H 0.091 0.909 14 N -0.649 5.649 15 C 0.048 3.952 16 C 0.440 3.560 17 O -0.582 6.582 18 N -0.564 5.564 19 C -0.298 4.298 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.281 1.281 26 H -0.282 1.282 27 C -0.069 4.069 28 C -0.134 4.134 29 C -0.118 4.118 30 C 0.111 3.889 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.352 0.648 41 H 0.087 0.913 42 H 0.043 0.957 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.062 0.938 46 H 0.056 0.944 47 H 0.050 0.950 48 H 0.057 0.943 49 H 0.043 0.957 50 H 0.076 0.924 51 H 0.082 0.918 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.703 4.222 3.639 21.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.133 4.133 3 C -0.135 4.135 4 H 0.135 0.865 5 C -0.185 4.185 6 C -0.210 4.210 7 H 0.140 0.860 8 C 0.355 3.645 9 O -0.423 6.423 10 N -0.349 5.349 11 C -0.055 4.055 12 C -0.030 4.030 13 H 0.110 0.890 14 N -0.281 5.281 15 C -0.085 4.085 16 C 0.226 3.774 17 O -0.467 6.467 18 N -0.200 5.200 19 C -0.428 4.428 20 H 0.122 0.878 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.208 1.208 27 C -0.070 4.070 28 C -0.191 4.191 29 C -0.176 4.176 30 C -0.011 4.011 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.117 0.883 37 H 0.123 0.877 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.173 0.827 41 H 0.105 0.895 42 H 0.061 0.939 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.075 0.925 47 H 0.069 0.931 48 H 0.076 0.924 49 H 0.062 0.938 50 H 0.095 0.905 51 H 0.100 0.900 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -20.488 5.178 4.359 21.577 hybrid contribution 0.290 -0.971 -1.178 1.554 sum -20.198 4.208 3.182 20.875 Atomic orbital electron populations 1.21736 0.95119 1.01699 1.02113 1.21167 0.96319 0.93535 1.02301 1.22493 0.91220 0.98798 1.01008 0.86465 1.23111 1.01833 1.03190 0.90337 1.22265 0.97659 0.98824 1.02249 0.85950 1.19258 0.80141 0.85485 0.79649 1.90685 1.52861 1.49275 1.49479 1.48843 1.04343 1.27939 1.53739 1.23394 0.87671 0.96542 0.97940 1.22638 0.86870 0.98623 0.94840 0.89038 1.60297 1.19337 1.11107 1.37376 1.21752 0.95564 0.91006 1.00176 1.19778 0.87537 0.85424 0.84680 1.90531 1.69917 1.26619 1.59593 1.41873 1.15680 1.07417 1.55044 1.19747 0.91114 0.95062 1.36876 0.87849 1.25266 1.00214 0.94640 0.97852 1.69616 1.38705 0.97858 1.48112 0.85806 0.81572 0.78655 0.78359 1.19202 1.20730 1.20773 1.21516 0.94908 0.95472 0.95150 1.21825 1.01302 1.01380 0.94626 1.21546 0.96989 0.96948 1.02110 1.22621 0.93526 0.89082 0.95902 0.92524 0.92519 0.92552 0.91533 0.91353 0.88337 0.87664 0.90659 0.90189 0.82708 0.89496 0.93861 0.77490 0.91908 0.91874 0.92469 0.93055 0.92360 0.93808 0.90499 0.89971 0.90904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.87 37.16 0.37 -0.57 16 2 C -0.10 -0.67 6.22 -26.73 -0.17 -0.84 16 3 C -0.12 -1.02 5.25 -90.62 -0.48 -1.50 16 4 H 0.12 1.20 7.60 -51.93 -0.39 0.81 16 5 C -0.15 -1.22 9.88 -26.73 -0.26 -1.48 16 6 C -0.19 -1.81 5.30 -91.76 -0.49 -2.30 16 7 H 0.12 1.02 7.06 -51.93 -0.37 0.65 16 8 C 0.57 7.05 7.70 -10.98 -0.08 6.97 16 9 O -0.55 -8.58 16.54 5.56 0.09 -8.49 16 10 N -0.62 -6.92 3.33 -169.06 -0.56 -7.49 16 11 C 0.07 0.71 6.50 -2.41 -0.02 0.69 16 12 C 0.08 0.91 2.99 -66.31 -0.20 0.71 16 13 H 0.09 1.00 7.44 -51.93 -0.39 0.61 16 14 N -0.65 -9.09 4.21 -106.51 -0.45 -9.53 16 15 C 0.05 0.75 6.00 -4.98 -0.03 0.72 16 16 C 0.44 9.79 7.82 -10.98 -0.09 9.70 16 17 O -0.58 -15.03 15.78 5.55 0.09 -14.94 16 18 N -0.56 -13.71 5.29 -10.96 -0.06 -13.77 16 19 C -0.30 -8.10 9.68 -14.93 -0.14 -8.25 16 20 H 0.10 2.96 7.16 -52.48 -0.38 2.59 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.01 13.05 55.50 0.72 -23.28 16 23 Si 0.93 20.66 29.55 -169.99 -5.02 15.64 16 24 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 25 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 26 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 27 C -0.07 -0.73 1.03 -153.10 -0.16 -0.88 16 28 C -0.13 -1.33 8.24 37.16 0.31 -1.03 16 29 C -0.12 -1.33 7.45 37.16 0.28 -1.06 16 30 C 0.11 1.21 6.16 -2.25 -0.01 1.20 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.42 7.88 -51.93 -0.41 0.01 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.11 0.70 8.03 -51.93 -0.42 0.29 16 38 H 0.08 0.77 7.60 -51.93 -0.39 0.38 16 39 H 0.08 0.71 6.77 -51.93 -0.35 0.36 16 40 H 0.35 5.16 7.32 -39.29 -0.29 4.87 16 41 H 0.09 1.28 8.08 -51.93 -0.42 0.86 16 42 H 0.04 0.60 8.11 -51.93 -0.42 0.18 16 43 H 0.39 9.11 7.90 -40.82 -0.32 8.79 16 44 H 0.27 6.82 8.31 -40.82 -0.34 6.49 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 46 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.06 0.69 7.43 -51.93 -0.39 0.31 16 49 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.08 1.02 7.84 -51.93 -0.41 0.61 16 51 H 0.08 0.95 7.61 -51.93 -0.40 0.56 16 52 H 0.07 0.77 7.84 -51.93 -0.41 0.36 16 LS Contribution 417.92 15.07 6.30 6.30 Total: -1.00 -31.48 417.92 -9.24 -40.72 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: -9.08 Total: 12.29 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: -1.27 Total: 2.56 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: -0.34 Total: -54.08 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: 0.18 Total: -23.43 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -31.48 -9.24 -40.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755762077.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.107 kcal (2) G-P(sol) polarization free energy of solvation -31.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds