Wall clock time and date at job start Tue Mar 31 2020 19:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47247 * 2 1 4 4 H 1.09003 * 115.56024 * 29.31300 * 3 2 1 5 5 C 1.53067 * 117.49251 * 243.60029 * 3 2 1 6 6 C 1.52995 * 59.98702 * 252.51758 * 5 3 2 7 7 H 1.08998 * 117.50229 * 107.50246 * 6 5 3 8 8 C 1.50702 * 117.49760 * 252.50408 * 6 5 3 9 9 O 1.21284 * 120.00374 * 68.74397 * 8 6 5 10 10 N 1.34778 * 120.00172 * 248.74188 * 8 6 5 11 11 C 1.48151 * 127.83369 * 0.02712 * 10 8 6 12 12 C 1.54393 * 104.71948 * 140.35385 * 11 10 8 13 13 H 1.08998 * 110.34288 * 265.05235 * 12 11 10 14 14 N 1.46896 * 110.34056 * 142.79460 * 12 11 10 15 15 C 1.46905 * 110.99768 * 86.45353 * 14 12 11 16 16 C 1.50707 * 109.46672 * 179.97438 * 15 14 12 17 17 O 1.21289 * 120.00473 * 359.97438 * 16 15 14 18 18 N 1.34781 * 119.99518 * 180.02562 * 16 15 14 19 19 C 1.37097 * 119.99605 * 179.97438 * 18 16 15 20 20 H 1.07996 * 120.00232 * 359.97438 * 19 18 16 21 21 C 1.38948 * 119.99877 * 180.02562 * 19 18 16 22 22 N 1.31417 * 120.00251 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 120.00061 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.46981 * 90.00412 * 23 21 19 25 25 H 1.48494 * 109.47298 * 210.00119 * 23 21 19 26 26 H 1.48497 * 109.47027 * 330.00558 * 23 21 19 27 27 C 1.54590 * 104.81259 * 23.89374 * 12 11 10 28 28 C 1.53005 * 110.31934 * 241.10784 * 27 12 11 29 29 C 1.52997 * 110.33677 * 118.87164 * 27 12 11 30 30 C 1.48141 * 127.84231 * 180.02562 * 10 8 6 31 31 H 1.09011 * 109.47015 * 299.99800 * 1 2 3 32 32 H 1.09001 * 109.47319 * 59.99440 * 1 2 3 33 33 H 1.09001 * 109.47500 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.47118 * 239.99804 * 2 1 3 35 35 H 1.09002 * 109.47390 * 120.00011 * 2 1 3 36 36 H 1.09003 * 117.51261 * 145.03331 * 5 3 2 37 37 H 1.08998 * 117.49610 * 0.02562 * 5 3 2 38 38 H 1.09002 * 110.40666 * 259.19717 * 11 10 8 39 39 H 1.09002 * 110.40751 * 21.51159 * 11 10 8 40 40 H 1.00903 * 110.99969 * 210.40734 * 14 12 11 41 41 H 1.08989 * 109.47371 * 299.99185 * 15 14 12 42 42 H 1.09000 * 109.47293 * 60.00426 * 15 14 12 43 43 H 0.96995 * 120.00051 * 359.97438 * 18 16 15 44 44 H 0.96998 * 120.00115 * 179.97438 * 22 21 19 45 45 H 1.08994 * 109.47159 * 177.01297 * 28 27 12 46 46 H 1.08998 * 109.46817 * 297.01379 * 28 27 12 47 47 H 1.09002 * 109.47159 * 57.01498 * 28 27 12 48 48 H 1.09003 * 109.46981 * 302.97083 * 29 27 12 49 49 H 1.08997 * 109.47611 * 62.97022 * 29 27 12 50 50 H 1.09001 * 109.47143 * 182.97898 * 29 27 12 51 51 H 1.09001 * 110.41010 * 338.37809 * 30 10 8 52 52 H 1.09006 * 110.40650 * 100.68851 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1718 0.4814 5 6 2.8447 1.9075 -1.2162 6 6 3.5502 1.6578 0.1183 7 1 4.1803 0.7718 0.1965 8 6 4.0229 2.8619 0.8914 9 8 3.2159 3.6158 1.3928 10 7 5.3424 3.1011 1.0257 11 6 6.4698 2.3030 0.4900 12 6 7.5015 3.3497 0.0169 13 1 7.3767 3.5507 -1.0471 14 7 8.8664 2.8821 0.2928 15 6 9.3678 2.0444 -0.8049 16 6 10.7676 1.5850 -0.4871 17 8 11.2957 1.9227 0.5513 18 7 11.4330 0.7998 -1.3573 19 6 12.7065 0.3824 -1.0685 20 1 13.1767 0.6830 -0.1439 21 6 13.3927 -0.4267 -1.9658 22 7 14.6133 -0.8273 -1.6888 23 14 12.5797 -0.9462 -3.5654 24 1 12.8801 0.0542 -4.6210 25 1 13.1024 -2.2734 -3.9782 26 1 11.1103 -1.0322 -3.3687 27 6 7.1871 4.6167 0.8449 28 6 6.7974 5.7722 -0.0792 29 6 8.3932 5.0040 1.7030 30 6 5.9946 4.2216 1.7424 31 1 -0.3634 0.5139 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 2.7225 2.9426 -1.5351 37 1 3.0101 1.1857 -2.0160 38 1 6.8965 1.6752 1.2722 39 1 6.1375 1.6910 -0.3486 40 1 9.4864 3.6589 0.4672 41 1 8.7191 1.1769 -0.9254 42 1 9.3767 2.6229 -1.7286 43 1 11.0108 0.5301 -2.1879 44 1 15.0921 -1.3924 -2.3151 45 1 6.5278 6.6417 0.5202 46 1 7.6403 6.0222 -0.7235 47 1 5.9466 5.4758 -0.6926 48 1 8.6664 4.1665 2.3449 49 1 9.2338 5.2551 1.0561 50 1 8.1388 5.8662 2.3194 51 1 5.3044 5.0586 1.8477 52 1 6.3454 3.8939 2.7211 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755762078.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:38 Heat of formation + Delta-G solvation = -40.385343 kcal Electronic energy + Delta-G solvation = -29725.086070 eV Core-core repulsion = 25725.402712 eV Total energy + Delta-G solvation = -3999.683358 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.69808 -39.26886 -38.29169 -37.07005 -34.79681 -33.97968 -33.51777 -32.34602 -31.69246 -29.02316 -27.74361 -27.38132 -26.20936 -24.37385 -24.04342 -23.59736 -22.06934 -20.81978 -19.69713 -19.29141 -18.89139 -18.32467 -17.37804 -16.30367 -16.21435 -15.87608 -15.49663 -15.10320 -14.96186 -14.88578 -14.62521 -14.30389 -14.08327 -13.90867 -13.56305 -13.25811 -13.06064 -12.89295 -12.85823 -12.57282 -12.46542 -12.43741 -12.29501 -12.06416 -11.98875 -11.79569 -11.67792 -11.61875 -11.37432 -11.22399 -11.02102 -10.95867 -10.71566 -10.63066 -10.61465 -10.35051 -10.01236 -9.97517 -9.61147 -8.91869 -8.62978 -8.26990 -8.20565 -6.34511 -3.86164 2.28434 2.66553 2.99014 3.03208 3.12120 3.50601 3.69349 3.94530 4.06404 4.09478 4.30346 4.38249 4.43848 4.47759 4.64217 4.77086 4.81740 4.85693 4.98723 5.04663 5.08277 5.08841 5.14877 5.20994 5.31813 5.37922 5.43776 5.45823 5.49811 5.52508 5.57565 5.59329 5.64095 5.68562 5.73096 5.73585 5.75183 5.78880 5.80569 5.87811 5.89082 6.02076 6.03532 6.07853 6.28537 7.02765 7.36493 7.48463 7.54421 7.98054 8.10692 8.55736 8.91307 9.38601 9.78232 10.78517 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010934 B = 0.002608 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2560.273907 B =10731.812374 C =12685.027417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.096 4.096 3 C -0.117 4.117 4 H 0.117 0.883 5 C -0.148 4.148 6 C -0.188 4.188 7 H 0.124 0.876 8 C 0.566 3.434 9 O -0.547 6.547 10 N -0.617 5.617 11 C 0.108 3.892 12 C 0.080 3.920 13 H 0.057 0.943 14 N -0.660 5.660 15 C 0.045 3.955 16 C 0.450 3.550 17 O -0.564 6.564 18 N -0.590 5.590 19 C -0.305 4.305 20 H 0.120 0.880 21 C 0.041 3.959 22 N -0.880 5.880 23 Si 0.880 3.120 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.269 1.269 27 C -0.079 4.079 28 C -0.137 4.137 29 C -0.141 4.141 30 C 0.118 3.882 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.359 0.641 41 H 0.086 0.914 42 H 0.045 0.955 43 H 0.370 0.630 44 H 0.274 0.726 45 H 0.060 0.940 46 H 0.058 0.942 47 H 0.054 0.946 48 H 0.079 0.921 49 H 0.062 0.938 50 H 0.058 0.942 51 H 0.081 0.919 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.551 6.627 -0.897 25.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.133 4.133 3 C -0.135 4.135 4 H 0.135 0.865 5 C -0.185 4.185 6 C -0.209 4.209 7 H 0.142 0.858 8 C 0.355 3.645 9 O -0.424 6.424 10 N -0.351 5.351 11 C -0.016 4.016 12 C -0.031 4.031 13 H 0.075 0.925 14 N -0.297 5.297 15 C -0.088 4.088 16 C 0.235 3.765 17 O -0.446 6.446 18 N -0.229 5.229 19 C -0.434 4.434 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.520 5.520 23 Si 0.706 3.294 24 H -0.197 1.197 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.081 4.081 28 C -0.195 4.195 29 C -0.199 4.199 30 C -0.005 4.005 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.116 0.884 37 H 0.123 0.877 38 H 0.108 0.892 39 H 0.095 0.905 40 H 0.185 0.815 41 H 0.104 0.896 42 H 0.063 0.937 43 H 0.203 0.797 44 H 0.084 0.916 45 H 0.079 0.921 46 H 0.077 0.923 47 H 0.073 0.927 48 H 0.098 0.902 49 H 0.081 0.919 50 H 0.077 0.923 51 H 0.100 0.900 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -24.714 6.589 0.391 25.580 hybrid contribution -0.044 -0.020 -2.123 2.124 sum -24.758 6.568 -1.732 25.673 Atomic orbital electron populations 1.21738 0.95142 1.01688 1.02104 1.21164 0.96294 0.93555 1.02313 1.22501 0.91267 0.98781 1.00983 0.86471 1.23111 1.01957 1.03126 0.90332 1.22267 0.97652 0.98860 1.02103 0.85844 1.19244 0.80091 0.85493 0.79652 1.90687 1.52913 1.49238 1.49601 1.48798 1.04535 1.27949 1.53769 1.22554 0.85420 0.93987 0.99607 1.22507 0.89942 0.93040 0.97661 0.92485 1.60317 1.01810 1.26177 1.41430 1.21794 0.96175 0.98238 0.92606 1.19675 0.87196 0.83833 0.85776 1.90568 1.69125 1.59200 1.25711 1.42209 1.15515 1.46122 1.19094 1.19425 0.88256 1.28200 1.07500 0.86260 1.25048 0.95722 0.97125 0.98289 1.69621 1.10633 1.35062 1.36722 0.86673 0.79354 0.79392 0.83962 1.19676 1.20165 1.19477 1.21678 0.95832 0.94672 0.95868 1.21878 1.01335 0.97205 0.99068 1.21800 0.96055 1.02265 0.99781 1.22430 0.93113 0.89818 0.95094 0.92519 0.92537 0.92566 0.91552 0.91322 0.88378 0.87706 0.89229 0.90474 0.81549 0.89560 0.93662 0.79711 0.91589 0.92141 0.92277 0.92680 0.90219 0.91942 0.92342 0.90046 0.90548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.87 37.16 0.37 -0.55 16 2 C -0.10 -0.65 6.22 -26.73 -0.17 -0.82 16 3 C -0.12 -0.99 5.25 -90.58 -0.48 -1.47 16 4 H 0.12 1.18 7.60 -51.93 -0.39 0.78 16 5 C -0.15 -1.15 9.88 -26.70 -0.26 -1.42 16 6 C -0.19 -1.75 5.02 -91.77 -0.46 -2.21 16 7 H 0.12 1.01 7.65 -51.93 -0.40 0.61 16 8 C 0.57 6.92 7.70 -10.98 -0.08 6.84 16 9 O -0.55 -8.45 16.52 5.55 0.09 -8.36 16 10 N -0.62 -6.87 3.32 -169.29 -0.56 -7.43 16 11 C 0.11 1.12 6.44 -2.40 -0.02 1.10 16 12 C 0.08 0.86 3.03 -66.15 -0.20 0.66 16 13 H 0.06 0.59 7.44 -51.93 -0.39 0.21 16 14 N -0.66 -9.05 5.19 -106.34 -0.55 -9.61 16 15 C 0.04 0.67 6.01 -4.97 -0.03 0.64 16 16 C 0.45 9.67 7.82 -10.98 -0.09 9.58 16 17 O -0.56 -14.47 15.78 5.55 0.09 -14.38 16 18 N -0.59 -13.52 5.09 -10.96 -0.06 -13.58 16 19 C -0.31 -8.42 10.16 -14.93 -0.15 -8.57 16 20 H 0.12 3.78 7.39 -52.49 -0.39 3.39 16 21 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 22 N -0.88 -25.33 13.96 55.50 0.77 -24.55 16 23 Si 0.88 18.88 27.74 -169.99 -4.71 14.16 16 24 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 25 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 26 H -0.27 -5.22 6.52 56.52 0.37 -4.85 16 27 C -0.08 -0.77 1.03 -152.94 -0.16 -0.93 16 28 C -0.14 -1.22 8.25 37.16 0.31 -0.91 16 29 C -0.14 -1.40 7.12 37.16 0.26 -1.13 16 30 C 0.12 1.25 6.14 -2.41 -0.01 1.24 16 31 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.40 7.88 -51.93 -0.41 -0.01 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.10 0.65 8.03 -51.93 -0.42 0.23 16 38 H 0.09 1.03 8.06 -51.93 -0.42 0.61 16 39 H 0.08 0.69 7.21 -51.93 -0.37 0.31 16 40 H 0.36 5.18 5.46 -39.29 -0.21 4.96 16 41 H 0.09 1.15 8.11 -51.94 -0.42 0.72 16 42 H 0.05 0.60 8.08 -51.93 -0.42 0.18 16 43 H 0.37 7.41 5.76 -40.82 -0.24 7.18 16 44 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 45 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 48 H 0.08 0.91 7.69 -51.93 -0.40 0.51 16 49 H 0.06 0.64 6.88 -51.93 -0.36 0.28 16 50 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 51 H 0.08 0.90 7.60 -51.93 -0.39 0.51 16 52 H 0.08 0.81 7.87 -51.93 -0.41 0.40 16 LS Contribution 414.04 15.07 6.24 6.24 Total: -1.00 -32.93 414.04 -8.96 -41.89 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: -9.01 Total: 12.55 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: -1.27 Total: 3.06 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: -0.40 Total: -55.16 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: 0.18 Total: -22.74 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -4.71 Total: 14.16 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -32.93 -8.96 -41.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755762078.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.509 kcal (2) G-P(sol) polarization free energy of solvation -32.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds