Wall clock time and date at job start Tue Mar 31 2020 20:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47113 * 2 1 4 4 N 1.46493 * 109.47002 * 179.97438 * 3 2 1 5 5 C 1.46504 * 120.00073 * 85.09118 * 4 3 2 6 6 C 1.53001 * 109.47014 * 89.99649 * 5 4 3 7 7 C 1.52996 * 117.50050 * 243.74634 * 6 5 4 8 8 C 1.53005 * 117.49893 * 175.09069 * 6 5 4 9 9 C 1.34778 * 120.00108 * 265.36086 * 4 3 2 10 10 O 1.21352 * 119.99953 * 4.77015 * 9 4 3 11 11 C 1.49457 * 119.99963 * 184.76268 * 9 4 3 12 12 O 1.21343 * 119.99645 * 85.31914 * 11 9 4 13 13 N 1.34772 * 119.99977 * 265.31406 * 11 9 4 14 14 C 1.47082 * 120.88203 * 354.68253 * 13 11 9 15 15 C 1.53702 * 108.27703 * 128.75400 * 14 13 11 16 16 N 1.46906 * 109.25162 * 54.08526 * 15 14 13 17 17 C 1.46900 * 110.99760 * 172.60899 * 16 15 14 18 18 C 1.50706 * 109.46977 * 294.30047 * 17 16 15 19 19 H 1.07993 * 119.99784 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99693 * 179.97438 * 18 17 16 21 21 N 1.31520 * 119.99781 * 179.97438 * 20 18 17 22 22 Si 1.86795 * 120.00297 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.47312 * 89.99624 * 22 20 18 24 24 H 1.48502 * 109.47173 * 209.99586 * 22 20 18 25 25 H 1.48503 * 109.47179 * 329.99846 * 22 20 18 26 26 C 1.46896 * 111.26887 * 296.75434 * 16 15 14 27 27 C 1.47075 * 120.88166 * 174.96336 * 13 11 9 28 28 H 1.09000 * 109.47068 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47497 * 300.00331 * 1 2 3 30 30 H 1.09002 * 109.47067 * 60.00284 * 1 2 3 31 31 H 1.08990 * 109.47227 * 240.00077 * 2 1 3 32 32 H 1.09002 * 109.47067 * 119.99716 * 2 1 3 33 33 H 1.09004 * 109.47209 * 59.99493 * 3 2 1 34 34 H 1.09002 * 109.46922 * 299.99805 * 3 2 1 35 35 H 1.09000 * 109.47251 * 209.99583 * 5 4 3 36 36 H 1.09005 * 109.46906 * 329.99948 * 5 4 3 37 37 H 1.08998 * 115.55129 * 29.42143 * 6 5 4 38 38 H 1.09008 * 117.49787 * 0.02562 * 7 6 5 39 39 H 1.09004 * 117.49984 * 145.01779 * 7 6 5 40 40 H 1.09004 * 117.49583 * 214.98594 * 8 6 5 41 41 H 1.09005 * 117.49474 * 359.97438 * 8 6 5 42 42 H 1.09004 * 109.63150 * 248.52285 * 14 13 11 43 43 H 1.08995 * 109.63062 * 9.10860 * 14 13 11 44 44 H 1.08996 * 109.64981 * 294.08259 * 15 14 13 45 45 H 1.08999 * 109.42244 * 173.94608 * 15 14 13 46 46 H 1.09003 * 109.47352 * 54.29652 * 17 16 15 47 47 H 1.08998 * 109.47500 * 174.29811 * 17 16 15 48 48 H 0.96999 * 119.99999 * 180.02562 * 21 20 18 49 49 H 1.09005 * 109.49449 * 303.15180 * 26 16 15 50 50 H 1.08996 * 109.49722 * 183.07200 * 26 16 15 51 51 H 1.09002 * 109.62700 * 350.89354 * 27 13 11 52 52 H 1.08998 * 109.63168 * 111.47796 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.2380 1.3337 -1.2632 6 6 4.4932 2.7331 -1.8268 7 6 3.8404 3.0856 -3.1648 8 6 5.3495 2.8405 -3.0902 9 6 4.1783 1.5371 1.1643 10 8 3.5743 1.5350 2.2168 11 6 5.6690 1.6443 1.1584 12 8 6.1987 2.7284 1.0290 13 7 6.4249 0.5371 1.2968 14 6 5.8071 -0.7692 1.5708 15 6 6.3492 -1.7824 0.5499 16 7 7.8177 -1.7701 0.5883 17 6 8.3750 -2.8450 -0.2435 18 6 8.0047 -4.1809 0.3477 19 1 7.4148 -4.2267 1.2511 20 6 8.4191 -5.3445 -0.2649 21 7 8.0964 -6.5103 0.2513 22 14 9.4400 -5.2652 -1.8272 23 1 10.8822 -5.2303 -1.4748 24 1 9.1630 -6.4625 -2.6609 25 1 9.0866 -4.0398 -2.5878 26 6 8.3504 -0.4620 0.1844 27 6 7.8897 0.6041 1.1841 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 5.1903 0.8330 -1.0888 36 1 3.6491 0.7567 -1.9762 37 1 4.5857 3.5282 -1.0870 38 1 3.2288 2.3207 -3.6435 39 1 3.5037 4.1128 -3.3055 40 1 6.0051 3.7065 -3.1816 41 1 5.7313 1.9142 -3.5196 42 1 6.0621 -1.0904 2.5807 43 1 4.7246 -0.6906 1.4709 44 1 6.0092 -1.5129 -0.4500 45 1 5.9872 -2.7793 0.8013 46 1 7.9709 -2.7700 -1.2531 47 1 9.4604 -2.7516 -0.2788 48 1 8.3882 -7.3290 -0.1795 49 1 7.9824 -0.2109 -0.8105 50 1 9.4395 -0.5013 0.1705 51 1 8.1848 1.5914 0.8284 52 1 8.3411 0.4125 2.1575 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601416632.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:11 Heat of formation + Delta-G solvation = -29.486165 kcal Electronic energy + Delta-G solvation = -31280.526811 eV Core-core repulsion = 27281.316077 eV Total energy + Delta-G solvation = -3999.210734 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.08578 -39.16928 -37.87561 -37.61570 -35.92777 -34.65190 -33.40137 -32.47183 -31.05627 -28.99575 -27.99771 -27.15429 -25.80182 -23.92031 -23.27419 -22.64655 -21.87150 -21.54845 -21.03605 -20.07038 -18.84714 -17.84932 -17.17268 -16.95721 -16.67928 -15.71288 -15.48439 -15.21759 -14.94263 -14.74880 -14.68975 -14.58931 -14.20827 -14.05201 -13.84619 -13.68516 -13.39300 -13.16509 -12.96080 -12.49844 -12.37928 -12.28143 -12.23491 -12.00556 -11.78612 -11.67122 -11.59493 -11.51987 -11.29183 -11.16269 -10.94957 -10.90403 -10.67932 -10.66114 -10.42433 -10.28355 -9.98918 -9.55403 -9.41754 -9.07754 -8.74385 -8.66015 -7.57617 -6.14453 -4.13048 1.99865 2.03970 2.54838 3.13733 3.21179 3.29100 3.29795 3.51325 3.99282 4.33032 4.42186 4.49968 4.56299 4.67778 4.72170 4.74089 4.91384 5.00187 5.04887 5.14537 5.16814 5.18797 5.21237 5.29733 5.32328 5.36905 5.40874 5.44061 5.53186 5.60547 5.61567 5.62744 5.78577 5.83378 5.84023 5.86640 5.90842 6.00155 6.04132 6.20077 6.23984 6.27568 6.41220 6.69916 6.82237 6.86565 7.15868 7.44685 7.63668 7.70701 7.79423 7.84963 8.52808 8.92776 9.46542 10.98301 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010738 B = 0.003435 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2607.005049 B = 8148.705558 C = 8488.375790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.142 4.142 3 C 0.114 3.886 4 N -0.593 5.593 5 C 0.136 3.864 6 C -0.173 4.173 7 C -0.178 4.178 8 C -0.170 4.170 9 C 0.519 3.481 10 O -0.512 6.512 11 C 0.516 3.484 12 O -0.520 6.520 13 N -0.591 5.591 14 C 0.108 3.892 15 C 0.053 3.947 16 N -0.526 5.526 17 C 0.164 3.836 18 C -0.514 4.514 19 H 0.082 0.918 20 C 0.071 3.929 21 N -0.897 5.897 22 Si 0.874 3.126 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.269 1.269 26 C 0.039 3.961 27 C 0.118 3.882 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.112 0.888 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.077 0.923 44 H 0.026 0.974 45 H 0.106 0.894 46 H -0.011 1.011 47 H 0.027 0.973 48 H 0.264 0.736 49 H 0.028 0.972 50 H 0.085 0.915 51 H 0.092 0.908 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.966 16.959 -5.892 21.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.180 4.180 3 C -0.008 4.008 4 N -0.327 5.327 5 C 0.013 3.987 6 C -0.192 4.192 7 C -0.215 4.215 8 C -0.208 4.208 9 C 0.302 3.698 10 O -0.386 6.386 11 C 0.298 3.702 12 O -0.395 6.395 13 N -0.326 5.326 14 C -0.015 4.015 15 C -0.076 4.076 16 N -0.251 5.251 17 C 0.038 3.962 18 C -0.552 4.552 19 H 0.100 0.900 20 C -0.131 4.131 21 N -0.536 5.536 22 Si 0.701 3.299 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.194 1.194 26 C -0.090 4.090 27 C -0.004 4.004 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.106 0.894 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.108 0.892 37 H 0.130 0.870 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.105 0.895 43 H 0.095 0.905 44 H 0.044 0.956 45 H 0.124 0.876 46 H 0.007 0.993 47 H 0.045 0.955 48 H 0.074 0.926 49 H 0.047 0.953 50 H 0.104 0.896 51 H 0.110 0.890 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.841 17.248 -4.924 20.959 hybrid contribution 0.411 -0.035 -1.725 1.774 sum -10.430 17.213 -6.650 21.197 Atomic orbital electron populations 1.21675 0.94864 1.02196 1.01847 1.21900 0.96420 0.96645 1.03047 1.21655 0.77841 0.97632 1.03679 1.47930 1.07124 1.71705 1.05926 1.21300 0.97264 0.95262 0.84898 1.22795 1.05796 0.98828 0.91823 1.23062 0.95790 1.02639 0.99959 1.22932 0.93630 1.03637 1.00555 1.20359 0.88549 0.76488 0.84387 1.90800 1.68846 1.48490 1.30458 1.20130 0.87487 0.84965 0.77644 1.90766 1.72598 1.26498 1.49654 1.48290 1.07911 1.07800 1.68596 1.22204 0.96704 0.81314 1.01240 1.22445 0.89295 1.00051 0.95825 1.61888 1.05462 1.02229 1.55480 1.20179 0.94925 0.90407 0.90727 1.20996 1.34626 0.87664 1.11916 0.90025 1.24887 0.95775 0.95350 0.97133 1.69888 1.46163 0.97405 1.40117 0.86884 0.81218 0.77767 0.83987 1.20077 1.21171 1.19353 1.22468 1.00614 0.90310 0.95615 1.21874 0.77776 0.99889 1.00896 0.92201 0.92458 0.92691 0.91573 0.91165 0.89425 0.90112 0.89803 0.89171 0.87008 0.88673 0.88832 0.88517 0.88526 0.89506 0.90481 0.95594 0.87599 0.99304 0.95512 0.92556 0.95334 0.89623 0.89002 0.90145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 37.16 0.37 -0.69 16 2 C -0.14 -1.23 6.26 -26.73 -0.17 -1.40 16 3 C 0.11 1.05 5.43 -4.04 -0.02 1.03 16 4 N -0.59 -6.67 2.47 -174.19 -0.43 -7.10 16 5 C 0.14 1.35 5.48 -4.04 -0.02 1.33 16 6 C -0.17 -1.67 6.01 -90.62 -0.54 -2.22 16 7 C -0.18 -1.35 10.18 -26.70 -0.27 -1.62 16 8 C -0.17 -1.48 10.25 -26.70 -0.27 -1.75 16 9 C 0.52 7.54 5.48 -11.58 -0.06 7.48 16 10 O -0.51 -8.66 16.65 5.50 0.09 -8.57 16 11 C 0.52 7.94 5.70 -11.58 -0.07 7.88 16 12 O -0.52 -8.98 16.58 5.50 0.09 -8.89 16 13 N -0.59 -8.68 2.99 -172.69 -0.52 -9.20 16 14 C 0.11 1.58 6.55 -3.36 -0.02 1.56 16 15 C 0.05 0.89 5.47 -3.46 -0.02 0.87 16 16 N -0.53 -9.87 4.62 -235.46 -1.09 -10.96 16 17 C 0.16 3.65 3.79 -4.97 -0.02 3.63 16 18 C -0.51 -13.64 8.96 -34.44 -0.31 -13.95 16 19 H 0.08 2.36 7.37 -52.49 -0.39 1.97 16 20 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 21 N -0.90 -26.34 13.96 55.43 0.77 -25.57 16 22 Si 0.87 20.45 27.47 -169.99 -4.67 15.78 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 26 C 0.04 0.60 5.62 -3.70 -0.02 0.58 16 27 C 0.12 1.65 6.58 -3.60 -0.02 1.63 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.09 0.91 7.35 -51.93 -0.38 0.53 16 34 H 0.08 0.58 8.11 -51.93 -0.42 0.16 16 35 H 0.08 0.96 6.97 -51.93 -0.36 0.60 16 36 H 0.09 0.73 7.81 -51.93 -0.41 0.32 16 37 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.09 0.63 8.03 -51.92 -0.42 0.21 16 39 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.08 1.05 6.37 -51.93 -0.33 0.72 16 44 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.11 2.00 6.67 -51.93 -0.35 1.66 16 46 H -0.01 -0.24 7.18 -51.93 -0.37 -0.62 16 47 H 0.03 0.60 7.40 -51.93 -0.38 0.22 16 48 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 49 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.09 1.24 7.99 -51.93 -0.41 0.82 16 51 H 0.09 1.23 7.10 -51.93 -0.37 0.87 16 52 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 415.15 15.07 6.26 6.26 Total: -1.00 -31.39 415.15 -10.32 -41.70 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -9.25 Total: 0.35 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: -1.57 Total: 6.19 kcal Atomic # 7 Polarization: -51.57 SS G_CDS: -1.26 Total: -52.83 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: 0.18 Total: -17.46 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.67 Total: 15.78 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -31.39 -10.32 -41.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601416632.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.219 kcal (2) G-P(sol) polarization free energy of solvation -31.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds