Wall clock time and date at job start Tue Mar 31 2020 20:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47113 * 2 1 4 4 N 1.46493 * 109.47002 * 179.97438 * 3 2 1 5 5 C 1.46504 * 120.00073 * 85.09118 * 4 3 2 6 6 C 1.53001 * 109.47014 * 89.99649 * 5 4 3 7 7 C 1.52996 * 117.50050 * 243.74634 * 6 5 4 8 8 C 1.53005 * 117.49893 * 175.09069 * 6 5 4 9 9 C 1.34778 * 120.00108 * 265.36086 * 4 3 2 10 10 O 1.21352 * 119.99953 * 4.77015 * 9 4 3 11 11 C 1.49457 * 119.99963 * 184.76268 * 9 4 3 12 12 O 1.21343 * 119.99645 * 85.31914 * 11 9 4 13 13 N 1.34772 * 119.99977 * 265.31406 * 11 9 4 14 14 C 1.47082 * 120.88203 * 354.68253 * 13 11 9 15 15 C 1.53702 * 108.27703 * 128.75400 * 14 13 11 16 16 N 1.46906 * 109.25162 * 54.08526 * 15 14 13 17 17 C 1.46900 * 110.99760 * 172.60899 * 16 15 14 18 18 C 1.50706 * 109.46977 * 294.30047 * 17 16 15 19 19 H 1.07993 * 119.99784 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99693 * 179.97438 * 18 17 16 21 21 N 1.31520 * 119.99781 * 179.97438 * 20 18 17 22 22 Si 1.86795 * 120.00297 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.47312 * 89.99624 * 22 20 18 24 24 H 1.48502 * 109.47173 * 209.99586 * 22 20 18 25 25 H 1.48503 * 109.47179 * 329.99846 * 22 20 18 26 26 C 1.46896 * 111.26887 * 296.75434 * 16 15 14 27 27 C 1.47075 * 120.88166 * 174.96336 * 13 11 9 28 28 H 1.09000 * 109.47068 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47497 * 300.00331 * 1 2 3 30 30 H 1.09002 * 109.47067 * 60.00284 * 1 2 3 31 31 H 1.08990 * 109.47227 * 240.00077 * 2 1 3 32 32 H 1.09002 * 109.47067 * 119.99716 * 2 1 3 33 33 H 1.09004 * 109.47209 * 59.99493 * 3 2 1 34 34 H 1.09002 * 109.46922 * 299.99805 * 3 2 1 35 35 H 1.09000 * 109.47251 * 209.99583 * 5 4 3 36 36 H 1.09005 * 109.46906 * 329.99948 * 5 4 3 37 37 H 1.08998 * 115.55129 * 29.42143 * 6 5 4 38 38 H 1.09008 * 117.49787 * 0.02562 * 7 6 5 39 39 H 1.09004 * 117.49984 * 145.01779 * 7 6 5 40 40 H 1.09004 * 117.49583 * 214.98594 * 8 6 5 41 41 H 1.09005 * 117.49474 * 359.97438 * 8 6 5 42 42 H 1.09004 * 109.63150 * 248.52285 * 14 13 11 43 43 H 1.08995 * 109.63062 * 9.10860 * 14 13 11 44 44 H 1.08996 * 109.64981 * 294.08259 * 15 14 13 45 45 H 1.08999 * 109.42244 * 173.94608 * 15 14 13 46 46 H 1.09003 * 109.47352 * 54.29652 * 17 16 15 47 47 H 1.08998 * 109.47500 * 174.29811 * 17 16 15 48 48 H 0.96999 * 119.99999 * 180.02562 * 21 20 18 49 49 H 1.09005 * 109.49449 * 303.15180 * 26 16 15 50 50 H 1.08996 * 109.49722 * 183.07200 * 26 16 15 51 51 H 1.09002 * 109.62700 * 350.89354 * 27 13 11 52 52 H 1.08998 * 109.63168 * 111.47796 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.2380 1.3337 -1.2632 6 6 4.4932 2.7331 -1.8268 7 6 3.8404 3.0856 -3.1648 8 6 5.3495 2.8405 -3.0902 9 6 4.1783 1.5371 1.1643 10 8 3.5743 1.5350 2.2168 11 6 5.6690 1.6443 1.1584 12 8 6.1987 2.7284 1.0290 13 7 6.4249 0.5371 1.2968 14 6 5.8071 -0.7692 1.5708 15 6 6.3492 -1.7824 0.5499 16 7 7.8177 -1.7701 0.5883 17 6 8.3750 -2.8450 -0.2435 18 6 8.0047 -4.1809 0.3477 19 1 7.4148 -4.2267 1.2511 20 6 8.4191 -5.3445 -0.2649 21 7 8.0964 -6.5103 0.2513 22 14 9.4400 -5.2652 -1.8272 23 1 10.8822 -5.2303 -1.4748 24 1 9.1630 -6.4625 -2.6609 25 1 9.0866 -4.0398 -2.5878 26 6 8.3504 -0.4620 0.1844 27 6 7.8897 0.6041 1.1841 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 5.1903 0.8330 -1.0888 36 1 3.6491 0.7567 -1.9762 37 1 4.5857 3.5282 -1.0870 38 1 3.2288 2.3207 -3.6435 39 1 3.5037 4.1128 -3.3055 40 1 6.0051 3.7065 -3.1816 41 1 5.7313 1.9142 -3.5196 42 1 6.0621 -1.0904 2.5807 43 1 4.7246 -0.6906 1.4709 44 1 6.0092 -1.5129 -0.4500 45 1 5.9872 -2.7793 0.8013 46 1 7.9709 -2.7700 -1.2531 47 1 9.4604 -2.7516 -0.2788 48 1 8.3882 -7.3290 -0.1795 49 1 7.9824 -0.2109 -0.8105 50 1 9.4395 -0.5013 0.1705 51 1 8.1848 1.5914 0.8284 52 1 8.3411 0.4125 2.1575 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601416632.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:10 Heat of formation + Delta-G solvation = -49.120189 kcal Electronic energy + Delta-G solvation = -31281.378206 eV Core-core repulsion = 27281.316077 eV Total energy + Delta-G solvation = -4000.062129 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.23015 -40.33019 -39.02835 -38.65559 -36.77949 -36.13190 -34.44976 -34.15181 -32.33365 -30.62916 -28.79632 -28.33340 -27.12902 -25.08266 -24.56573 -23.29804 -23.14917 -22.48073 -22.15057 -21.22913 -19.92023 -19.03003 -18.89816 -18.22490 -17.86163 -16.69949 -16.59383 -16.40865 -16.14114 -16.05750 -15.86725 -15.67581 -15.54513 -15.25042 -14.96984 -14.88285 -14.45790 -14.29912 -14.22223 -13.97051 -13.68280 -13.20426 -13.08131 -12.99621 -12.90791 -12.71289 -12.67662 -12.59990 -12.37346 -12.34839 -12.27060 -12.22099 -11.95939 -11.83918 -11.63483 -11.41393 -11.37543 -10.98154 -10.75460 -10.74594 -10.03619 -9.97983 -9.07106 -8.24936 -6.28491 0.87139 0.89785 1.38856 1.38916 1.39423 1.49112 2.08353 2.36970 2.80432 2.92675 3.05589 3.12644 3.69833 3.77193 3.85491 3.91614 3.95606 4.01490 4.04610 4.10167 4.16541 4.20362 4.29614 4.33423 4.40038 4.43288 4.53526 4.60453 4.64983 4.69289 4.78703 4.79446 4.80535 4.89905 4.91578 4.96202 5.00984 5.07865 5.11624 5.18715 5.21687 5.22460 5.25093 5.28076 5.45861 5.54728 5.85635 5.88874 6.02416 6.27878 6.55718 6.58325 6.61534 6.78554 7.35347 8.91215 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010738 B = 0.003435 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2607.005049 B = 8148.705558 C = 8488.375790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.137 4.137 3 C 0.112 3.888 4 N -0.581 5.581 5 C 0.135 3.865 6 C -0.186 4.186 7 C -0.157 4.157 8 C -0.174 4.174 9 C 0.516 3.484 10 O -0.544 6.544 11 C 0.518 3.482 12 O -0.540 6.540 13 N -0.589 5.589 14 C 0.121 3.879 15 C 0.060 3.940 16 N -0.541 5.541 17 C 0.174 3.826 18 C -0.515 4.515 19 H 0.042 0.958 20 C 0.011 3.989 21 N -0.947 5.947 22 Si 0.944 3.056 23 H -0.268 1.268 24 H -0.286 1.286 25 H -0.248 1.248 26 C 0.044 3.956 27 C 0.121 3.879 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.045 0.955 33 H 0.074 0.926 34 H 0.110 0.890 35 H 0.069 0.931 36 H 0.116 0.884 37 H 0.087 0.913 38 H 0.113 0.887 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.101 0.899 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.036 0.964 45 H 0.078 0.922 46 H -0.008 1.008 47 H 0.033 0.967 48 H 0.266 0.734 49 H 0.037 0.963 50 H 0.099 0.901 51 H 0.102 0.898 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.142 18.454 -8.557 23.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.176 4.176 3 C -0.009 4.009 4 N -0.313 5.313 5 C 0.013 3.987 6 C -0.206 4.206 7 C -0.193 4.193 8 C -0.211 4.211 9 C 0.298 3.702 10 O -0.422 6.422 11 C 0.301 3.699 12 O -0.417 6.417 13 N -0.323 5.323 14 C -0.002 4.002 15 C -0.069 4.069 16 N -0.266 5.266 17 C 0.047 3.953 18 C -0.553 4.553 19 H 0.060 0.940 20 C -0.187 4.187 21 N -0.588 5.588 22 Si 0.768 3.232 23 H -0.193 1.193 24 H -0.212 1.212 25 H -0.172 1.172 26 C -0.085 4.085 27 C 0.000 4.000 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.128 0.872 35 H 0.087 0.913 36 H 0.134 0.866 37 H 0.105 0.895 38 H 0.131 0.869 39 H 0.119 0.881 40 H 0.113 0.887 41 H 0.119 0.881 42 H 0.100 0.900 43 H 0.105 0.895 44 H 0.055 0.945 45 H 0.096 0.904 46 H 0.010 0.990 47 H 0.051 0.949 48 H 0.075 0.925 49 H 0.055 0.945 50 H 0.117 0.883 51 H 0.121 0.879 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.027 18.769 -7.616 23.063 hybrid contribution 0.411 -0.466 -0.842 1.047 sum -10.617 18.303 -8.458 22.787 Atomic orbital electron populations 1.21655 0.93491 1.02504 1.02594 1.21855 0.97573 0.95913 1.02230 1.21848 0.76362 0.98228 1.04456 1.48029 1.08060 1.69756 1.05484 1.21435 0.96917 0.95839 0.84511 1.22612 1.08056 0.97777 0.92134 1.23155 0.95093 1.03608 0.97491 1.22994 0.94591 1.03862 0.99687 1.20272 0.88151 0.76775 0.84970 1.90785 1.69152 1.50550 1.31673 1.20303 0.87984 0.84647 0.77014 1.90749 1.73143 1.27153 1.50651 1.48307 1.08262 1.07540 1.68224 1.22021 0.97143 0.80801 1.00219 1.22313 0.88446 0.99216 0.96908 1.61762 1.06413 1.03184 1.55275 1.19931 0.95264 0.89354 0.90771 1.21245 1.33437 0.90088 1.10562 0.93994 1.25789 0.97215 0.94800 1.00875 1.70049 1.48174 0.98333 1.42247 0.85771 0.79457 0.78428 0.79589 1.19291 1.21194 1.17158 1.22513 1.01331 0.88438 0.96217 1.21892 0.77326 0.99971 1.00843 0.92132 0.92771 0.90899 0.90739 0.93605 0.90739 0.87187 0.91309 0.86562 0.89455 0.86898 0.88132 0.88704 0.88067 0.89992 0.89500 0.94539 0.90364 0.99030 0.94892 0.92535 0.94506 0.88314 0.87931 0.89847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.91 71.98 0.71 -1.10 16 2 C -0.14 -2.20 6.26 30.59 0.19 -2.00 16 3 C 0.11 1.88 5.43 86.38 0.47 2.35 16 4 N -0.58 -12.40 2.47 -823.36 -2.04 -14.43 16 5 C 0.14 2.41 5.48 86.38 0.47 2.88 16 6 C -0.19 -3.26 6.01 -10.79 -0.06 -3.32 16 7 C -0.16 -1.89 10.18 30.61 0.31 -1.58 16 8 C -0.17 -2.62 10.25 30.62 0.31 -2.31 16 9 C 0.52 14.86 5.48 87.27 0.48 15.34 16 10 O -0.54 -18.66 16.65 -3.25 -0.05 -18.72 16 11 C 0.52 15.71 5.70 87.27 0.50 16.21 16 12 O -0.54 -18.43 16.58 -3.22 -0.05 -18.49 16 13 N -0.59 -16.87 2.99 -818.62 -2.45 -19.32 16 14 C 0.12 3.53 6.55 86.50 0.57 4.10 16 15 C 0.06 2.02 5.47 86.54 0.47 2.49 16 16 N -0.54 -19.89 4.62 -898.85 -4.15 -24.04 16 17 C 0.17 7.55 3.79 85.56 0.32 7.87 16 18 C -0.51 -27.78 8.96 25.60 0.23 -27.55 16 19 H 0.04 2.53 7.37 -2.91 -0.02 2.51 16 20 C 0.01 0.59 5.47 84.65 0.46 1.06 16 21 N -0.95 -57.01 13.96 21.45 0.30 -56.71 16 22 Si 0.94 41.56 27.47 68.60 1.88 43.45 16 23 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 24 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 25 H -0.25 -10.00 6.54 99.48 0.65 -9.35 16 26 C 0.04 1.25 5.62 86.38 0.49 1.73 16 27 C 0.12 3.23 6.58 86.35 0.57 3.80 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.07 1.49 7.35 -2.38 -0.02 1.48 16 34 H 0.11 1.24 8.11 -2.39 -0.02 1.22 16 35 H 0.07 1.46 6.97 -2.39 -0.02 1.44 16 36 H 0.12 1.47 7.81 -2.38 -0.02 1.45 16 37 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.11 1.00 8.03 -2.38 -0.02 0.98 16 39 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 40 H 0.09 1.45 8.14 -2.38 -0.02 1.44 16 41 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 42 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16 43 H 0.09 2.38 6.37 -2.39 -0.02 2.37 16 44 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.08 3.08 6.67 -2.39 -0.02 3.06 16 46 H -0.01 -0.34 7.18 -2.39 -0.02 -0.36 16 47 H 0.03 1.40 7.40 -2.39 -0.02 1.39 16 48 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 49 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 50 H 0.10 2.59 7.99 -2.39 -0.02 2.57 16 51 H 0.10 2.57 7.10 -2.39 -0.02 2.56 16 52 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -69.33 415.15 0.76 -68.57 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: 0.83 Total: 19.72 kcal Atomic # 6 Polarization: 13.47 SS G_CDS: 6.50 Total: 19.97 kcal Atomic # 7 Polarization: -106.16 SS G_CDS: -8.34 Total: -114.50 kcal Atomic # 8 Polarization: -37.10 SS G_CDS: -0.11 Total: -37.21 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 1.88 Total: 43.45 kcal Total: -69.33 0.76 -68.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601416632.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.445 kcal (2) G-P(sol) polarization free energy of solvation -69.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds