Wall clock time and date at job start Tue Mar 31 2020 21:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46942 * 2 1 4 4 C 1.50700 * 109.47437 * 120.00261 * 2 1 3 5 5 O 1.21281 * 120.00014 * 264.22797 * 4 2 1 6 6 N 1.34775 * 119.99957 * 84.22595 * 4 2 1 7 7 C 1.46924 * 120.62974 * 5.75428 * 6 4 2 8 8 C 1.53195 * 108.77282 * 233.58719 * 7 6 4 9 9 C 1.53037 * 109.31594 * 305.36437 * 8 7 6 10 10 C 1.53041 * 109.53594 * 61.36738 * 9 8 7 11 11 C 1.46927 * 120.62693 * 185.73665 * 6 4 2 12 12 H 1.09000 * 109.70205 * 246.26794 * 11 6 4 13 13 C 1.50697 * 109.59021 * 6.62168 * 11 6 4 14 14 O 1.21281 * 119.99628 * 61.14809 * 13 11 6 15 15 N 1.34773 * 120.00040 * 241.14756 * 13 11 6 16 16 C 1.46501 * 119.99990 * 180.02562 * 15 13 11 17 17 H 1.09000 * 112.84702 * 336.19512 * 16 15 13 18 18 C 1.53781 * 113.69520 * 107.46098 * 16 15 13 19 19 C 1.53779 * 87.07897 * 139.99387 * 18 16 15 20 20 H 1.08995 * 113.69193 * 89.13712 * 19 18 16 21 21 N 1.46511 * 113.60916 * 220.02034 * 19 18 16 22 22 C 1.36933 * 119.99924 * 252.21866 * 21 19 18 23 23 H 1.08007 * 120.00230 * 0.28426 * 22 21 19 24 24 C 1.38810 * 119.99903 * 180.27617 * 22 21 19 25 25 N 1.31617 * 120.00242 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 119.99829 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47148 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.47061 * 120.00608 * 26 24 22 29 29 H 1.48505 * 109.46994 * 240.00248 * 26 24 22 30 30 C 1.53777 * 113.61473 * 205.00010 * 16 15 13 31 31 H 1.09004 * 109.47279 * 54.92645 * 1 2 3 32 32 H 1.09002 * 109.46984 * 174.92130 * 1 2 3 33 33 H 1.08996 * 109.47092 * 294.92180 * 1 2 3 34 34 H 1.09007 * 109.47054 * 240.00372 * 2 1 3 35 35 H 1.09001 * 109.46886 * 179.97438 * 3 2 1 36 36 H 1.09001 * 109.47256 * 299.99925 * 3 2 1 37 37 H 1.08998 * 109.47105 * 60.00138 * 3 2 1 38 38 H 1.08998 * 109.58433 * 113.80361 * 7 6 4 39 39 H 1.08992 * 109.70430 * 353.44667 * 7 6 4 40 40 H 1.09009 * 109.49292 * 185.41737 * 8 7 6 41 41 H 1.08998 * 109.49790 * 65.32517 * 8 7 6 42 42 H 1.08999 * 109.46078 * 301.34895 * 9 8 7 43 43 H 1.08998 * 109.45153 * 181.38228 * 9 8 7 44 44 H 1.09006 * 109.50039 * 178.68390 * 10 9 8 45 45 H 1.09000 * 109.52571 * 58.60484 * 10 9 8 46 46 H 0.96992 * 120.00176 * 359.97438 * 15 13 11 47 47 H 1.09007 * 113.60806 * 25.44679 * 18 16 15 48 48 H 1.08994 * 113.61518 * 254.54557 * 18 16 15 49 49 H 0.97002 * 119.99635 * 72.50649 * 21 19 18 50 50 H 0.96996 * 120.00473 * 179.97438 * 25 24 22 51 51 H 1.09003 * 113.61626 * 105.38808 * 30 16 15 52 52 H 1.08996 * 113.69438 * 334.49221 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.3341 -0.0737 2.2176 6 7 2.1463 -2.0534 1.2338 7 6 1.9057 -2.8281 0.0089 8 6 0.8643 -3.9114 0.3073 9 6 1.3327 -4.7493 1.4991 10 6 1.4657 -3.8542 2.7333 11 6 2.5139 -2.7703 2.4625 12 1 3.4936 -3.2320 2.3394 13 6 2.5524 -1.8045 3.6187 14 8 1.5490 -1.2044 3.9411 15 7 3.7018 -1.6077 4.2944 16 6 3.7390 -0.6692 5.4187 17 1 2.9561 0.0873 5.3647 18 6 3.8404 -1.3538 6.7920 19 6 4.8190 -0.2361 7.1892 20 1 4.3327 0.6393 7.6197 21 7 5.9541 -0.7063 7.9873 22 6 6.0233 -0.4073 9.3218 23 1 5.2388 0.1712 9.7871 24 6 7.1016 -0.8479 10.0768 25 7 8.0578 -1.5526 9.5098 26 14 7.1956 -0.4407 11.8974 27 1 6.0051 0.3560 12.2886 28 1 7.2292 -1.6992 12.6851 29 1 8.4273 0.3443 12.1661 30 6 5.1372 -0.0902 5.6918 31 1 -0.3634 0.5905 -0.8411 32 1 -0.3633 -1.0237 -0.0910 33 1 -0.3633 0.4330 0.9319 34 1 1.8933 -0.5138 -0.8901 35 1 3.1299 1.4425 0.0005 36 1 1.6766 1.9564 -0.8900 37 1 1.6766 1.9563 0.8900 38 1 2.8353 -3.2948 -0.3168 39 1 1.5332 -2.1693 -0.7754 40 1 0.7474 -4.5538 -0.5656 41 1 -0.0905 -3.4425 0.5449 42 1 2.2993 -5.1980 1.2700 43 1 0.6051 -5.5362 1.6979 44 1 1.7769 -4.4559 3.5873 45 1 0.5054 -3.3858 2.9488 46 1 4.5041 -2.0878 4.0367 47 1 4.2984 -2.3422 6.7543 48 1 2.9083 -1.3393 7.3569 49 1 6.6586 -1.2258 7.5695 50 1 8.8115 -1.8602 10.0372 51 1 5.2521 0.9445 5.3687 52 1 5.9507 -0.7320 5.3537 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023120939.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:22 Heat of formation + Delta-G solvation = -41.344887 kcal Electronic energy + Delta-G solvation = -30669.448790 eV Core-core repulsion = 26669.723823 eV Total energy + Delta-G solvation = -3999.724967 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.17067 -39.15968 -37.92535 -37.33205 -34.73181 -33.89889 -33.07981 -32.60374 -31.50117 -29.74908 -27.45798 -26.45163 -24.98934 -24.66260 -24.13910 -23.44452 -21.92162 -20.83024 -20.31871 -19.37199 -18.65756 -17.79862 -17.06713 -16.67410 -16.38867 -15.74405 -15.38610 -14.99542 -14.87010 -14.51766 -14.41466 -14.29513 -14.17932 -13.90686 -13.49135 -13.47061 -13.01137 -12.93465 -12.76324 -12.62831 -12.45474 -12.20666 -11.91450 -11.85540 -11.79025 -11.52717 -11.43577 -11.34231 -11.22304 -11.16944 -10.97320 -10.87897 -10.50700 -10.39025 -10.18998 -9.95396 -9.60293 -9.54122 -9.30281 -8.92080 -8.84738 -8.45498 -6.92541 -5.75997 -3.04131 2.38135 2.53150 3.28219 3.40959 3.44931 3.51071 3.53193 4.20296 4.30761 4.44127 4.50187 4.57044 4.62127 4.64735 4.73095 4.82953 4.84912 5.00078 5.06382 5.17241 5.24775 5.31334 5.34022 5.38492 5.41083 5.45937 5.47475 5.53217 5.56471 5.57279 5.61770 5.65382 5.69452 5.87886 5.97045 5.98055 6.01285 6.06696 6.17509 6.32842 6.37708 6.43755 6.69717 6.71855 6.95101 7.11928 7.20303 7.73765 7.88742 8.04074 8.42835 8.66832 9.54076 10.11877 10.46809 11.46712 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019609 B = 0.002382 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.566817 B =11754.322412 C =12590.176745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.110 4.110 3 C -0.135 4.135 4 C 0.510 3.490 5 O -0.493 6.493 6 N -0.606 5.606 7 C 0.107 3.893 8 C -0.137 4.137 9 C -0.118 4.118 10 C -0.123 4.123 11 C 0.127 3.873 12 H 0.084 0.916 13 C 0.535 3.465 14 O -0.530 6.530 15 N -0.712 5.712 16 C 0.130 3.870 17 H 0.107 0.893 18 C -0.176 4.176 19 C 0.168 3.832 20 H 0.079 0.921 21 N -0.711 5.711 22 C -0.240 4.240 23 H 0.072 0.928 24 C -0.015 4.015 25 N -0.934 5.934 26 Si 0.907 3.093 27 H -0.280 1.280 28 H -0.292 1.292 29 H -0.292 1.292 30 C -0.158 4.158 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.090 0.910 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.393 0.607 47 H 0.077 0.923 48 H 0.056 0.944 49 H 0.385 0.615 50 H 0.254 0.746 51 H 0.064 0.936 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.811 -4.913 -27.467 31.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.132 4.132 3 C -0.193 4.193 4 C 0.298 3.702 5 O -0.366 6.366 6 N -0.343 5.343 7 C -0.016 4.016 8 C -0.175 4.175 9 C -0.155 4.155 10 C -0.161 4.161 11 C 0.020 3.980 12 H 0.102 0.898 13 C 0.320 3.680 14 O -0.406 6.406 15 N -0.362 5.362 16 C 0.025 3.975 17 H 0.125 0.875 18 C -0.219 4.219 19 C 0.056 3.944 20 H 0.097 0.903 21 N -0.349 5.349 22 C -0.371 4.371 23 H 0.090 0.910 24 C -0.211 4.211 25 N -0.583 5.583 26 Si 0.738 3.262 27 H -0.205 1.205 28 H -0.219 1.219 29 H -0.219 1.219 30 C -0.198 4.198 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.107 0.893 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.108 0.892 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.098 0.902 45 H 0.098 0.902 46 H 0.226 0.774 47 H 0.096 0.904 48 H 0.075 0.925 49 H 0.219 0.781 50 H 0.064 0.936 51 H 0.083 0.917 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.375 -4.014 -26.470 30.874 hybrid contribution 0.828 -0.509 0.610 1.147 sum -14.548 -4.523 -25.861 30.015 Atomic orbital electron populations 1.21732 0.92529 1.02370 1.03162 1.21295 0.97913 0.97861 0.96089 1.21661 1.01352 0.93671 1.02618 1.20794 0.77798 0.81561 0.90077 1.90810 1.47277 1.64502 1.33970 1.47994 1.70882 1.05761 1.09683 1.21826 0.99238 0.94143 0.86348 1.21955 0.99143 0.97473 0.98970 1.21508 1.01974 0.97721 0.94328 1.21827 0.99703 0.95947 0.98639 1.21182 0.99304 0.92722 0.84765 0.89822 1.19654 0.84160 0.81637 0.82506 1.90657 1.34446 1.47529 1.67987 1.45832 1.11304 1.45077 1.33962 1.22331 0.98501 0.92188 0.84481 0.87475 1.24322 1.01067 1.01183 0.95308 1.21358 0.89465 0.94812 0.88801 0.90349 1.42373 1.22730 1.63043 1.06746 1.19379 1.04546 1.27817 0.85362 0.90963 1.24759 0.97185 1.00839 0.98285 1.69667 1.11696 1.41714 1.35185 0.86109 0.77329 0.77464 0.85272 1.20490 1.21893 1.21875 1.23828 0.95780 1.00685 0.99470 0.91432 0.92282 0.91647 0.89258 0.92373 0.91990 0.91261 0.91110 0.89168 0.90487 0.91196 0.91485 0.91092 0.90237 0.90230 0.77382 0.90404 0.92469 0.78149 0.93573 0.91742 0.90255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 9.10 37.16 0.34 -0.71 16 2 C -0.11 -0.93 2.43 -91.77 -0.22 -1.15 16 3 C -0.14 -1.21 8.72 37.16 0.32 -0.88 16 4 C 0.51 6.23 6.51 -10.99 -0.07 6.15 16 5 O -0.49 -8.31 11.82 -19.16 -0.23 -8.54 16 6 N -0.61 -5.99 2.97 -166.54 -0.49 -6.48 16 7 C 0.11 0.62 6.27 -3.71 -0.02 0.59 16 8 C -0.14 -0.71 6.08 -26.61 -0.16 -0.87 16 9 C -0.12 -0.72 5.88 -26.69 -0.16 -0.88 16 10 C -0.12 -1.14 5.32 -26.61 -0.14 -1.28 16 11 C 0.13 1.39 3.31 -68.75 -0.23 1.16 16 12 H 0.08 0.76 7.92 -51.93 -0.41 0.34 16 13 C 0.53 8.26 4.39 -10.99 -0.05 8.21 16 14 O -0.53 -10.31 14.18 -19.16 -0.27 -10.58 16 15 N -0.71 -10.72 5.36 -53.02 -0.28 -11.00 16 16 C 0.13 2.25 4.24 -67.12 -0.28 1.96 16 17 H 0.11 2.05 7.46 -51.93 -0.39 1.67 16 18 C -0.18 -3.35 7.68 -25.92 -0.20 -3.55 16 19 C 0.17 3.52 4.48 -67.11 -0.30 3.22 16 20 H 0.08 1.65 8.10 -51.93 -0.42 1.23 16 21 N -0.71 -18.24 5.40 -52.63 -0.28 -18.53 16 22 C -0.24 -6.80 9.97 -15.06 -0.15 -6.95 16 23 H 0.07 2.00 7.83 -52.48 -0.41 1.59 16 24 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 25 N -0.93 -28.47 13.06 55.49 0.72 -27.75 16 26 Si 0.91 22.74 29.55 -169.99 -5.02 17.71 16 27 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 28 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 29 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 30 C -0.16 -2.79 7.58 -25.92 -0.20 -2.99 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.38 7.91 -51.93 -0.41 -0.03 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.09 0.52 6.27 -51.93 -0.33 0.19 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.77 7.87 -51.93 -0.41 0.36 16 38 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.09 0.38 5.19 -51.93 -0.27 0.11 16 40 H 0.08 0.25 8.14 -51.92 -0.42 -0.17 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.08 0.91 7.94 -51.93 -0.41 0.50 16 46 H 0.39 4.99 8.57 -40.82 -0.35 4.64 16 47 H 0.08 1.52 8.14 -51.92 -0.42 1.10 16 48 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 49 H 0.38 10.34 7.92 -40.82 -0.32 10.02 16 50 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 51 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 52 H 0.08 1.37 8.10 -51.93 -0.42 0.95 16 LS Contribution 406.35 15.07 6.12 6.12 Total: -1.00 -35.89 406.35 -10.54 -46.43 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -9.18 Total: 11.11 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -1.62 Total: 1.50 kcal Atomic # 7 Polarization: -63.41 SS G_CDS: -0.34 Total: -63.75 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.50 Total: -19.12 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -35.89 -10.54 -46.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023120939.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.081 kcal (2) G-P(sol) polarization free energy of solvation -35.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds