Wall clock time and date at job start Tue Mar 31 2020 21:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.47200 * 2 1 4 4 O 1.21285 * 120.00073 * 0.02562 * 3 2 1 5 5 N 1.34775 * 119.99556 * 179.97438 * 3 2 1 6 6 C 1.46925 * 120.63493 * 0.02562 * 5 3 2 7 7 C 1.53195 * 108.77460 * 233.62841 * 6 5 3 8 8 C 1.53041 * 109.31201 * 305.36186 * 7 6 5 9 9 C 1.53041 * 109.53632 * 61.36792 * 8 7 6 10 10 H 1.08998 * 109.50090 * 58.61463 * 9 8 7 11 11 C 1.50706 * 109.49574 * 178.68620 * 9 8 7 12 12 O 1.21280 * 120.00006 * 359.97438 * 11 9 8 13 13 N 1.34780 * 119.99902 * 180.02562 * 11 9 8 14 14 C 1.46496 * 120.00111 * 179.97438 * 13 11 9 15 15 C 1.52994 * 109.47167 * 185.08671 * 14 13 11 16 16 H 1.09000 * 109.87470 * 303.54875 * 15 14 13 17 17 C 1.54319 * 109.88203 * 64.56689 * 15 14 13 18 18 C 1.55160 * 103.10624 * 141.67578 * 17 15 14 19 19 C 1.55126 * 101.48182 * 324.71511 * 18 17 15 20 20 N 1.47027 * 110.00865 * 182.44973 * 15 14 13 21 21 C 1.36932 * 125.64998 * 61.60528 * 20 15 14 22 22 H 1.08005 * 120.00044 * 13.62117 * 21 20 15 23 23 C 1.38813 * 120.00200 * 193.61392 * 21 20 15 24 24 N 1.31616 * 119.99760 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00107 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.46891 * 60.00270 * 25 23 21 27 27 H 1.48493 * 109.47268 * 180.02562 * 25 23 21 28 28 H 1.48509 * 109.46895 * 300.00467 * 25 23 21 29 29 C 1.46933 * 120.62762 * 180.02562 * 5 3 2 30 30 H 1.09006 * 109.46816 * 299.99786 * 1 2 3 31 31 H 1.09002 * 109.47198 * 59.99419 * 1 2 3 32 32 H 1.08995 * 109.47292 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.46660 * 240.00046 * 2 1 3 34 34 H 1.09001 * 109.46683 * 120.00499 * 2 1 3 35 35 H 1.08996 * 109.58522 * 113.83972 * 6 5 3 36 36 H 1.09003 * 109.70260 * 353.48251 * 6 5 3 37 37 H 1.09000 * 109.49352 * 185.41426 * 7 6 5 38 38 H 1.08994 * 109.49669 * 65.31159 * 7 6 5 39 39 H 1.09000 * 109.46365 * 301.34671 * 8 7 6 40 40 H 1.09000 * 109.45856 * 181.38396 * 8 7 6 41 41 H 0.97001 * 119.99539 * 359.97438 * 13 11 9 42 42 H 1.09005 * 109.46875 * 65.08322 * 14 13 11 43 43 H 1.09001 * 109.46694 * 305.08870 * 14 13 11 44 44 H 1.08999 * 110.71947 * 260.12692 * 17 15 14 45 45 H 1.09003 * 110.72575 * 23.22222 * 17 15 14 46 46 H 1.08998 * 111.00352 * 82.65770 * 18 17 15 47 47 H 1.09000 * 111.00798 * 206.51290 * 18 17 15 48 48 H 1.08999 * 110.20637 * 277.95602 * 19 18 17 49 49 H 1.08998 * 110.42055 * 155.70278 * 19 18 17 50 50 H 0.97004 * 119.99364 * 179.97438 * 24 23 21 51 51 H 1.09001 * 109.58170 * 6.59061 * 29 5 3 52 52 H 1.08995 * 109.58784 * 246.15776 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6670 0.0005 6 6 4.3244 0.5608 0.0005 7 6 5.2961 0.7553 1.1688 8 6 5.9306 2.1447 1.0734 9 6 4.8393 3.2134 1.1697 10 1 4.3028 3.1017 2.1119 11 6 5.4683 4.5815 1.1081 12 8 6.6711 4.6916 0.9984 13 7 4.6942 5.6828 1.1759 14 6 5.3057 7.0127 1.1166 15 6 4.2311 8.0785 1.3403 16 1 3.4334 7.9602 0.6069 17 6 3.6556 7.9522 2.7666 18 6 3.4523 9.4292 3.1961 19 6 4.6629 10.1186 2.5137 20 7 4.8214 9.4201 1.2251 21 6 5.4188 9.9357 0.1060 22 1 5.2956 9.4434 -0.8474 23 6 6.1828 11.0911 0.1969 24 7 6.3333 11.6908 1.3588 25 14 6.9972 11.7949 -1.3298 26 1 5.9573 12.1306 -2.3354 27 1 7.7508 13.0221 -0.9678 28 1 7.9313 10.7910 -1.8999 29 6 3.8625 3.0468 0.0011 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8932 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 4.8777 0.5591 -0.9386 36 1 3.7986 -0.3870 0.1166 37 1 6.0761 -0.0047 1.1235 38 1 4.7550 0.6664 2.1107 39 1 6.4508 2.2418 0.1204 40 1 6.6408 2.2764 1.8897 41 1 3.7323 5.5947 1.2640 42 1 5.7640 7.1585 0.1384 43 1 6.0679 7.0970 1.8911 44 1 2.7043 7.4202 2.7530 45 1 4.3655 7.4530 3.4262 46 1 2.5118 9.8224 2.8103 47 1 3.5012 9.5312 4.2802 48 1 5.5581 9.9975 3.1236 49 1 4.4552 11.1759 2.3490 50 1 6.8674 12.4980 1.4223 51 1 3.0300 3.7405 0.1189 52 1 4.3782 3.2475 -0.9379 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027901092.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:42 Heat of formation + Delta-G solvation = -63.117274 kcal Electronic energy + Delta-G solvation = -30172.432242 eV Core-core repulsion = 26171.763154 eV Total energy + Delta-G solvation = -4000.669088 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.77316 -39.51172 -37.81180 -37.17803 -34.29650 -33.62037 -32.77495 -32.48366 -31.62021 -29.60835 -28.57452 -26.32548 -25.38199 -24.60182 -23.68799 -23.34200 -21.47880 -20.33286 -19.92900 -19.37366 -19.20172 -17.77368 -17.02122 -16.40312 -16.30545 -16.04869 -15.80068 -15.29460 -14.88389 -14.52365 -14.42403 -14.19008 -14.05818 -13.86358 -13.66438 -13.46194 -13.08174 -12.98702 -12.84346 -12.46971 -12.11181 -12.07063 -11.87053 -11.82987 -11.67195 -11.53637 -11.30268 -11.28890 -11.23515 -10.95846 -10.91501 -10.76592 -10.23394 -10.14458 -10.10588 -9.93127 -9.82407 -9.70554 -9.54568 -8.99145 -8.66877 -8.56589 -6.83755 -5.75338 -3.11899 2.31257 2.53526 2.87672 3.39219 3.43857 3.46074 3.47776 4.09837 4.36386 4.48448 4.50023 4.54126 4.63905 4.68053 4.72533 4.85574 4.94448 5.10689 5.11185 5.28609 5.35205 5.36518 5.41879 5.42366 5.48247 5.52427 5.53677 5.57644 5.63612 5.65763 5.82431 5.88058 5.88272 6.05799 6.07327 6.10592 6.16148 6.26444 6.47443 6.55310 6.63182 6.71394 6.82340 7.03805 7.07102 7.53308 7.61110 7.77263 7.80116 7.86255 8.26601 8.45622 9.18483 9.79065 10.46322 11.36329 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015062 B = 0.002502 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.512773 B =11188.333507 C =11685.978714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.143 4.143 3 C 0.512 3.488 4 O -0.537 6.537 5 N -0.613 5.613 6 C 0.104 3.896 7 C -0.135 4.135 8 C -0.101 4.101 9 C -0.121 4.121 10 H 0.098 0.902 11 C 0.513 3.487 12 O -0.539 6.539 13 N -0.721 5.721 14 C 0.109 3.891 15 C 0.152 3.848 16 H 0.038 0.962 17 C -0.126 4.126 18 C -0.149 4.149 19 C 0.172 3.828 20 N -0.589 5.589 21 C -0.233 4.233 22 H 0.075 0.925 23 C -0.002 4.002 24 N -0.916 5.916 25 Si 0.911 3.089 26 H -0.284 1.284 27 H -0.290 1.290 28 H -0.283 1.283 29 C 0.121 3.879 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.396 0.604 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.057 0.943 45 H 0.062 0.938 46 H 0.058 0.942 47 H 0.058 0.942 48 H 0.024 0.976 49 H 0.074 0.926 50 H 0.254 0.746 51 H 0.099 0.901 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.109 -26.382 0.854 27.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.183 4.183 3 C 0.301 3.699 4 O -0.413 6.413 5 N -0.347 5.347 6 C -0.019 4.019 7 C -0.173 4.173 8 C -0.139 4.139 9 C -0.144 4.144 10 H 0.116 0.884 11 C 0.297 3.703 12 O -0.416 6.416 13 N -0.372 5.372 14 C -0.016 4.016 15 C 0.043 3.957 16 H 0.055 0.945 17 C -0.164 4.164 18 C -0.188 4.188 19 C 0.047 3.953 20 N -0.313 5.313 21 C -0.362 4.362 22 H 0.093 0.907 23 C -0.199 4.199 24 N -0.562 5.562 25 Si 0.741 3.259 26 H -0.211 1.211 27 H -0.216 1.216 28 H -0.210 1.210 29 C -0.002 4.002 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.230 0.770 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.076 0.924 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.077 0.923 48 H 0.042 0.958 49 H 0.093 0.907 50 H 0.064 0.936 51 H 0.117 0.883 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.522 -25.542 0.715 26.637 hybrid contribution 0.280 0.311 -0.676 0.795 sum -7.242 -25.231 0.040 26.250 Atomic orbital electron populations 1.21550 0.92914 1.01600 1.03528 1.21663 0.98691 0.93778 1.04137 1.20844 0.81473 0.92047 0.75566 1.90723 1.54669 1.46566 1.49391 1.48143 1.05728 1.07081 1.73783 1.21828 0.91135 0.89508 0.99406 1.21959 0.98848 0.97978 0.98562 1.21334 0.96533 0.91882 1.04107 1.21724 0.98040 0.93672 1.00930 0.88355 1.20313 0.87346 0.85763 0.76847 1.90715 1.14540 1.87127 1.49207 1.46213 1.10523 1.06772 1.73670 1.22238 0.97641 0.79315 1.02427 1.21123 0.93278 0.86561 0.94718 0.94479 1.22598 0.99523 0.97587 0.96704 1.23044 1.00874 0.95541 0.99307 1.21506 0.91906 0.96811 0.85031 1.44470 1.68104 1.08022 1.10693 1.18942 1.23596 1.07370 0.86273 0.90694 1.24899 0.99115 0.98915 0.96973 1.69929 1.43236 1.20609 1.22474 0.86219 0.79349 0.78287 0.82039 1.21064 1.21556 1.20976 1.21526 0.97561 0.83553 0.97579 0.91894 0.91904 0.92070 0.88948 0.88900 0.90930 0.89453 0.90079 0.91312 0.90796 0.90538 0.77023 0.91535 0.91597 0.92406 0.91923 0.92295 0.92335 0.95752 0.90748 0.93560 0.88311 0.90745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 9.20 37.16 0.34 -0.58 16 2 C -0.14 -0.84 4.77 -27.88 -0.13 -0.98 16 3 C 0.51 5.02 7.70 -10.99 -0.08 4.94 16 4 O -0.54 -7.48 15.40 5.55 0.09 -7.39 16 5 N -0.61 -5.30 2.97 -172.74 -0.51 -5.81 16 6 C 0.10 0.58 6.34 -3.71 -0.02 0.56 16 7 C -0.14 -0.81 6.08 -26.61 -0.16 -0.97 16 8 C -0.10 -0.95 4.46 -26.69 -0.12 -1.06 16 9 C -0.12 -1.29 2.68 -91.63 -0.25 -1.54 16 10 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 11 C 0.51 7.71 7.16 -10.98 -0.08 7.63 16 12 O -0.54 -10.37 15.98 5.56 0.09 -10.28 16 13 N -0.72 -10.86 5.23 -60.29 -0.32 -11.17 16 14 C 0.11 2.12 5.08 -4.05 -0.02 2.10 16 15 C 0.15 3.04 3.22 -66.96 -0.22 2.83 16 16 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 17 C -0.13 -2.16 6.09 -24.90 -0.15 -2.31 16 18 C -0.15 -2.79 7.11 -24.46 -0.17 -2.96 16 19 C 0.17 4.16 5.43 -2.41 -0.01 4.14 16 20 N -0.59 -14.78 3.13 -162.44 -0.51 -15.29 16 21 C -0.23 -6.46 9.77 -15.06 -0.15 -6.60 16 22 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 23 C 0.00 -0.05 5.47 -17.43 -0.10 -0.15 16 24 N -0.92 -26.87 10.54 55.49 0.58 -26.28 16 25 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 16 26 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 28 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 29 C 0.12 1.25 5.57 -3.69 -0.02 1.23 16 30 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 31 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.09 0.38 7.94 -51.93 -0.41 -0.04 16 34 H 0.09 0.37 7.70 -51.93 -0.40 -0.03 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.09 0.28 5.95 -51.93 -0.31 -0.03 16 37 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.76 8.13 -51.93 -0.42 0.34 16 40 H 0.08 0.80 8.07 -51.93 -0.42 0.38 16 41 H 0.40 5.01 7.89 -40.82 -0.32 4.68 16 42 H 0.07 1.46 7.93 -51.93 -0.41 1.05 16 43 H 0.07 1.44 8.08 -51.93 -0.42 1.02 16 44 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.06 1.06 7.81 -51.93 -0.41 0.65 16 46 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 48 H 0.02 0.64 8.08 -51.93 -0.42 0.22 16 49 H 0.07 2.00 6.86 -51.93 -0.36 1.64 16 50 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 51 H 0.10 1.14 6.61 -51.93 -0.34 0.79 16 52 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 405.02 15.07 6.10 6.10 Total: -1.00 -34.20 405.02 -10.09 -44.30 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -9.25 Total: 2.29 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: -1.34 Total: 6.28 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: -0.75 Total: -58.56 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: 0.17 Total: -17.67 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.20 -10.09 -44.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027901092.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.822 kcal (2) G-P(sol) polarization free energy of solvation -34.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds